BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10490.2
Length=1793
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478382 jgi|Araly1|478382|fgenesh2_kg.3__1083__AT3G10490.2 2737 0.0
Ahg317848 jgi|Araly1|317848|fgenesh1_pm.C_scaffold_3000864 1642 0.0
> Ahg478382 jgi|Araly1|478382|fgenesh2_kg.3__1083__AT3G10490.2
Length=1778
Score = 2737 bits (1482), Expect = 0.0
Identities = 1699/1800 (94%), Gaps = 30/1800 (2%)
Strand=Plus/Plus
Query 1 AAATTGGTATCGCAATCCAAAATACTTTTTTGTTGCTCTCTACTAGCCTGCCTTTCTGGG 60
||||||| ||||||||||||||||| |||| | | |||||| ||| |||||||
Sbjct 1 AAATTGGAATCGCAATCCAAAATAC---TTTG-T--T-ACTACTA----GCC-TTCTGGG 48
Query 61 AACGCGAAAAGAAAGACAAAATTTTCTTGCAATTGAAGGTGAGGTTTGGTGAAAGGGAAA 120
||||||||||||||||| ||| ||||||||||||||||||||| ||||| || |||||||
Sbjct 49 AACGCGAAAAGAAAGAC-AAA-TTTCTTGCAATTGAAGGTGAGATTTGGGGATAGGGAAA 106
Query 121 TTGAGAAAACCCTAGAACAAGTACGGTCTCTATTTTGCTTTAATGGGTCGCGAATCTGTG 180
||||| ||||||||||||||||||||||| || |||||| ||||||||||||||||| ||
Sbjct 107 TTGAGGAAACCCTAGAACAAGTACGGTCTTTACTTTGCTATAATGGGTCGCGAATCTCTG 166
Query 181 GCTGTTGTGACTGCGCCGCCCTCGGCGACTGCTCCGGGTACTGCTTCGGTGGCGACCTCG 240
||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||
Sbjct 167 GCTGTTGTGACTGCGCCGCCCTCGGCGACTGCTCCGGGTACTGCTACTGCGGCTACCTCG 226
Query 241 CTTGCTCCTGGCTTCCGATTTCATCCGACTGATGAGGAACTCGTGAGCTATTACTTGAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 CTTGCTCCTGGCTTCCGATTTCATCCGACTGATGAGGAACTCGTGAGCTATTACTTGAAG 286
Query 301 AGGAAGGTTCTGGGCCAACCTGTACGCTTCGATGCGATTGGAGAGGTCGATATATACAAG 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||
Sbjct 287 AGGAAGGTTCTGGGCAAACCTGTACGCTTCGATGCGATTGGAGAGGTCGATATCTATAAG 346
Query 361 CATGAGCCCTGGGATTTAGCAGTGTTTTCGAGATTGAAGACAAGGGACCAAGAATGGTAC 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 347 CATGAGCCCTGGGATTTAGCAGTGTTTTCGAGGTTGAAGACAAGGGACCAAGAATGGTAC 406
Query 421 TTCTACAGTGCATTAGATAAGAAGTATGGAAACGGTGCTAGGATGAACCGAGCAACTAAC 480
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 407 TTCTACAGCGCATTAGATAAGAAGTATGGAAACGGCGCTAGGATGAACCGAGCAACTAAC 466
Query 481 AGAGGGTACTGGAAAGCTACTGGAAAAGACAGAGAAATCCGCCGTGACATTCTGCTTCTC 540
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||
Sbjct 467 AGAGGGTACTGGAAAGCAACTGGAAAAGACAGAGAAATCCGCCGTGACATTCAGCTGCTC 526
Query 541 GGTATGAAAAAGACACTTGTTTTCCACAGTGGGCGTGCACCAGACGGGCTTCGGACTAAT 600
|||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 527 GGTATGAAAAAGACGCTTGTTTTCCACAGCGGGCGTGCCCCAGACGGGCTTCGGACTAAT 586
Query 601 TGGGTTATGCATGAGTATCGCCTTGTGGAATATGAAACCGAGAAAAACGGAAACCTGGTG 660
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TGGGTCATGCACGAGTATCGCCTTGTGGAATATGAAACCGAGAAAAACGGAAACCTGGTG 646
Query 661 CAAGATGCATATGTGTTGTGTAGAGTCTTCCACAAGAATAACATTGGGCCACCAAGTGGG 720
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 647 CAAGATGCATATGTGTTGTGCAGAGTCTTCCACAAGAATAACATTGGGCCACCAAGTGGG 706
Query 721 AACAGATATGCTCCGTTCATGGAAGAGGAATGGGCTGATGATGAAGGAGCTCTGATTCCA 780
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 707 AACAGATATGCGCCGTTCATGGAAGAGGAATGGGCTGATGATGCAGGAGCTCTGATTCCA 766
Query 781 GGAATAGACGTTAAGCTCAGGCTAGAGCCGCCGCCAGTAGCCAATGGAAACGACCAGATG 840
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 767 GGAATAGACGTTAAGCTCAGGCTAGAGCCGCCGCCAGTAGCCAATGGAAACAACCAGATG 826
Query 841 GACCAGGAAATCCAGTCAGCCAGCAAGAGTCTCATCAACATCAATGAGCCACCGAGAGAG 900
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 827 GACCAGGAAATCCAGTCAGGCAGCAAGAGTCTCATCAACATCAATGAGCCACCGAGAGAG 886
Query 901 ACAGCTCCACTGGATATCGAATCGGACCAACAGAATCATCATGAGAATGACCTCAAGCCG 960
||||||||| ||||||||||| | ||||||||||||||||||||||||| |||||||||
Sbjct 887 ACAGCTCCAATGGATATCGAACCTAACCAACAGAATCATCATGAGAATGAGCTCAAGCCG 946
Query 961 GAGGAGCATAACAACAATAATAATTATGATGAAAACGAGGAAACACTCAAACGCGAGCAG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 CAGGAGCATAACAACAATAATAATTATGATGAAAACGAGGAAACACTCAAACGCGAGCAC 1006
Query 1021 ATGGAAGAAGAGGAGCGTCCTCCTCGACCTGTATGCGTTCTCAACAAAGAAGCTCCATTA 1080
| ||||||||| ||||||||| ||| ||||||||| ||||||||||||||||||||||||
Sbjct 1007 ACGGAAGAAGATGAGCGTCCTGCTCCACCTGTATGTGTTCTCAACAAAGAAGCTCCATTA 1066
Query 1081 CCTCTTCTGCAATACAAACGTAGACGCCA-AAGCGAGTCCAACAACAACTCAAGCAGGAA 1139
||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 1067 CCTCTCCTGCAATACAAACGTAGACGCCAGAA-TGAGTCAAACAACAACTCAAGCAGGAA 1125
Query 1140 CACACAGGACCATTGTTCGTCCACAACAACAACTGTCGACAATACAACCACTTTAATCTC 1199
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1126 CACACAGGACCATTGTTCGTCCACAACAACAACCGTCGACAATACAACCACCTTAATCTC 1185
Query 1200 ATCATCTGCCGCTGCCACCAACACTGCCATCTCTGCATTGCTTGAGTTCTCACTCATGGG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 ATCATCTGCCGCTGCCACCAACACTGCCATCTCTGCATTGCTTGAGTTCTCACTCATGGG 1245
Query 1260 TATCTCCGACAAGAAAGAAAAGCCGCAGCAACCGCTACGTCCTCACAAGGAACCTT-TGC 1318
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 1246 TATCTCCGACAAGAAAGAAAAGCTGCAGCAACCGCTACGTCCTCACAAGGAACCTTCT-C 1304
Query 1319 CTCCTCAAACTCCACTTGCATCTCCTGAAGAGAAGGTTAATGATCTCCAGAAGGAGATTC 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 CTCCTCAAACTCCACTTGCATCTCCTGAAGAGAAGGTTAATGATCTCCAGAAGGAGATTC 1364
Query 1379 ACCAGATGTCTGTTGAAAGAGAAACTTTCAAGCTTGAAATGATGAGTGCAGAAGCTATGA 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 ACCAGATGTCTGTTGAAAGAGAAACTTTCAAGCTTGAAATGATGAGTGCAGAAGCTATGA 1424
Query 1439 TCAGTATTCTCCAGTCAAGGATCGATGCGCTGCGTCAGGAGAACGAGGAACTCAAGAAGA 1498
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1425 TCAGTATTCTGCAGTCAAGGATCGATGCGCTGCGTCAGGAGAACGAGGAACTTAAGAAGA 1484
Query 1499 ACAATGCTAATGGACAATAAAGGCTCTAAAAACATCTCTCCAGGTTACTTCTTATTGCCC 1558
||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||| |
Sbjct 1485 ACAATGCCAATGGACAATAAAGGCTCTAAAACCATCTCTCCAGGTTACTTCTTCTTGCTC 1544
Query 1559 TTCGCCTTTTATTTAGCTTTAATCTCCCTAATACTATGACCCATCTACATAGCTCCTCTA 1618
||||||||||| |||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 1545 TTCGCCTTTTA----GCTTTAATCTCCCTAATATTATGAGCCATCTATGTAGCTCCTCTA 1600
Query 1619 GACAGATTGCGAACTGTGTGAATCTCTGTTGTAACATAGGATAAAACGGATTCGAGCCCC 1678
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601 GACGGATTGCGAACCATGTGAATCTCTGTTGTAACATAGGATAAAACGGATTCGAGCCCC 1660
Query 1679 TGAGCTGAGTGTTTTATCCTTCTTCtttttttGTGT---GGATGTTCTTGCATCTTTTGA 1735
||||| |||||||||||||||||| ||||||| | | |||||||| ||||||||||||
Sbjct 1661 TGAGCCGAGTGTTTTATCCTTCTTTTTTTTTTTTTTTTTGGATGTTCCTGCATCTTTTGA 1720
Query 1736 GAACATTTTTTAGGTTG---CTCCATTGTCATATATCATCTATCTATCTAGTCTTTTCAG 1792
||||| ||| |||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1721 GAACAGTTT--AGGTTGTTGCTCCATTGTCATATATCATCTATCTATTTAGTCTTTTCAG 1778
> Ahg317848 jgi|Araly1|317848|fgenesh1_pm.C_scaffold_3000864
Length=1365
Score = 1642 bits (889), Expect = 0.0
Identities = 1220/1375 (89%), Gaps = 41/1375 (3%)
Strand=Plus/Plus
Query 163 ATGGGTCGCGAATCTGTGGCTGTTGTG-ACTGCGCCGCCCTCGGCGACTGCTCCGGGTAC 221
||||||||||||||| ||||||||||| || ||||||| ||||| ||||| ||| ||||
Sbjct 1 ATGGGTCGCGAATCTCTGGCTGTTGTGTCCT-CGCCGCCATCGGCAACTGCGCCGAGTAC 59
Query 222 TGCTTCG-GT-GGCGACCTCGCTTGCTCCTGGCTTCCGATTTCATCCGACTGATGAGGAA 279
||| | | || |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 60 TGC-T-GTGTCGGCGACCTCGCTTGCTCCTGGCTTTCGATTTCATCCGACTGATGAGGAA 117
Query 280 CTCGTGAGCTATTACTTGAAGAGGAAGGTTCTGGGCCAACCTGTACGCTTCGATGCGATT 339
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 118 CTCGTGAGCTATTACTTGAAGAGGAAGGTTCTGGGCAAACCTGTACGCTTCGATGCGATT 177
Query 340 GGAGAGGTCGATATATACAAGCATGAGCCCTGGGATTTAGCAGTGTTTTCGA-GATTGAA 398
|||||||||||||| ||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 178 GGAGAGGTCGATATCTACAAGCATGAGCCCTGGGATTTAGCAGTGTTTTCCAAG-TTGAA 236
Query 399 GACAAGGGACCAAGAATGGTACTTCTACAGTGCATTAGATAAGAAGTATGGAAACGGTGC 458
|| ||||||||||||||||||||| || || |||||||||||||| || || |||||
Sbjct 237 AACTCGGGACCAAGAATGGTACTTCTTTAGCGCGTTAGATAAGAAGTACGGTAATGGTGC 296
Query 459 TAGGATGAACCGAGCAACTAACAGAGGGTACTGGAAAGCTACTGGAAAAGACAGAGAAAT 518
||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 297 TAGGATGAATCGAGCAACTAACAAAGGGTACTGGAAAGCAACTGGAAAAGACAGAGAAAT 356
Query 519 CCGCCGTGACATTCTGCTT-CTCGGTATGAAAAAGACACTTGTTTTCCACAGTGGGCGTG 577
|||||| || |||| | || ||||||||||||||||| |||||||||||||| |||||||
Sbjct 357 CCGCCGGGATATTCAG-TTGCTCGGTATGAAAAAGACGCTTGTTTTCCACAGCGGGCGTG 415
Query 578 CACCAGACGGGCTTCGGACTAATTGGGTTATGCATGAGTATCGCCTTGTGGAATATGAAA 637
| |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 416 CTCCAGACGGGCTTCGGACTAATTGGGTGATGCACGAGTATCGACTTGTGGAATATGAAA 475
Query 638 CCGAGAAA-AACGGAAACCTGGTGCAAGATGCATATGTGTTGTGTAGAGTCTTCCACAAG 696
| || || ||||||| |||| |||| ||||||||||||||||| ||||| || ||||||
Sbjct 476 CTGA-AACTAACGGAAGCCTGCTGCAGGATGCATATGTGTTGTGCAGAGTGTTTCACAAG 534
Query 697 AATAACATTGGGCCACCAAGTGGGAACAGATATGCTCCGTTCATGGAAGAGGAATGGGCT 756
||||||||||||||||| ||||||||||||||||| || ||||||||||| |||||||||
Sbjct 535 AATAACATTGGGCCACCGAGTGGGAACAGATATGCGCCATTCATGGAAGAAGAATGGGCT 594
Query 757 GATGATGAAGGAGCTCTGATTCCAGGAATAGACGTTAAGCTCAGGCTAGAGCCGCCGCCA 816
|||| || ||||||||||||||||||||||||||||| | ||||| ||||| | | |||
Sbjct 595 GATGGTGGAGGAGCTCTGATTCCAGGAATAGACGTTAGGGTCAGGGTAGAGGCTCTACCA 654
Query 817 GTAGCCAATGGAAACGACCAGATGGACCAGGAAATCCAGTCAGCCAGCAAG-AGTCTCAT 875
||||||||||||| |||||||||||||||||||||| ||| | |||||| | ||||||
Sbjct 655 CAAGCCAATGGAAACAACCAGATGGACCAGGAAATCCATTCAACAAGCAAGGA-TCTCAT 713
Query 876 CAACATCAATGAGCCACCGAGAGA-GAC-AGCTCCACTGGATATCGAATCGGACCAACAG 933
|||||||| |||| ||||||||| | | | ||||| |||| |||||| | ||||||||
Sbjct 714 TAACATCAACGAGCTACCGAGAGATG-CTA-CTCCAATGGACATCGAACCTAACCAACAG 771
Query 934 AATCATCATGAGAATGACCT-CAAGCCGGAGGAGCATAACAACAATAATAATTATGATGA 992
||||||||||||| | ||| |||||| ||||| |||||||| ||| |||||| ||
Sbjct 772 AATCATCATGAGAGCG-CCTTCAAGCCACAGGAGAATAACAACCATAGCGGTTATGAAGA 830
Query 993 AAACGAGGAAACACTCAAACGCGAGCAGATGGAAGAAGAGGAGCGTCCTCCTCGACCTGT 1052
| | ||||||||||||||||||||||| | |||||||| ||||||||||||| || | |
Sbjct 831 AGATGAGGAAACACTCAAACGCGAGCACACAGAAGAAGATGAGCGTCCTCCTCCAC-TCT 889
Query 1053 ATGCGTTCTCAACAAAGAAGCTCCATTACCTCTTCTGCAATACAAACGTAGACGCCAAAG 1112
| |||||||||||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct 890 C--CATTCTCAACAAAGAAGCTCCACTACCTCTCCTCCAATACAAACGTAGACGCCAAAA 947
Query 1113 CGAGTCCAACAACAACTCAAGCAGGAACACACAGGACCATTGTTCGTC--C-ACAACAAC 1169
||| |||||||||||||||||||||| ||||||||||||||||||||| | |||| |||
Sbjct 948 CGAATCCAACAACAACTCAAGCAGGAGCACACAGGACCATTGTTCGTCGTCCACAATAAC 1007
Query 1170 AACTGTCGACAATACAACCACTTTAATCTCATCATC-T--GC--C-GCTGCCACCAACAC 1223
||| ||||||||||||||||| |||||||||||||| | || | ||||||||||||||
Sbjct 1008 AACCGTCGACAATACAACCACCTTAATCTCATCATCATCTGCTGCTGCTGCCACCAACAC 1067
Query 1224 TGCCATCTCTGCATTGCTTGAGTTCTCACTCATGGGTATCTCCGACAAGAAAGAAAAGCC 1283
|||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct 1068 TGCCATCTCTGCATTGCTTGAGTTCTCACTTATGGGCATCTCCGAAAAGAAAGAAAA-CC 1126
Query 1284 -GCAGCAACCGCT-ACGTCCTCACAAGGAACCTT-TGCCTCCTCAAACTCCACTTGCATC 1340
|||||||||||| | |||||||||||||| ||| | |||||| | |||| |||||||
Sbjct 1127 AGCAGCAACCGCTTA-GTCCTCACAAGGAAGCTTCT-CCTCCT-AG--TCCAATTGCATC 1181
Query 1341 TCCTGAAGAGAAGGTTAATGATCTCCAGAAGGAGATTCACCAGATGTCTGTTGAAAGAGA 1400
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1182 TCCTGAAGAGAAGGTTGATGATCTCCAGAAAGAGATTCACCAGATGTCTGTTGAAAGAGA 1241
Query 1401 AACTTTCAAGCTTGAAATGATGAGTGCAGAAGCTATGATCAGTATTCTCCAGTCAAGGAT 1460
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1242 AACTTTCAAGCTTGAGATGATGAGTGCAGAGGCTATGATCAGCATTCTCCAGTCAAGGAT 1301
Query 1461 CGATGCGCTGCGTCAGGAGAACGAGGAACTCAAGAAGAACAATGCTAATGGACAA 1515
|||||| ||||||||||||||||||||||| |||||||| || || | |||||||
Sbjct 1302 CGATGCACTGCGTCAGGAGAACGAGGAACTTAAGAAGAAGAACGCCAGTGGACAA 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67305462915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5