BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10500.1
Length=2021
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478384 jgi|Araly1|478384|fgenesh2_kg.3__1085__AT3G10500.1 2475 0.0
> Ahg478384 jgi|Araly1|478384|fgenesh2_kg.3__1085__AT3G10500.1
Length=1862
Score = 2475 bits (1340), Expect = 0.0
Identities = 1668/1818 (92%), Gaps = 56/1818 (3%)
Strand=Plus/Plus
Query 211 TTTTGGTCCATCGAG--TATATGGGTCGTGGCTCAGTAACATCGCTCGCTCCTGGGTTTC 268
|||||||||| |||| |||||||||||||||||||| || ||||||||||||||||| |
Sbjct 51 TTTTGGTCCACCGAGTATATATGGGTCGTGGCTCAGTGACGTCGCTCGCTCCTGGGTTCC 110
Query 269 GTTTTCATCCCACAGACGAAGAACTCGTTCGTTACTATCTGAAACGAAAGATCTGCAATA 328
| ||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 111 GCTTTCATCCCACGGACGAAGAACTCGTTCGTTACTACCTTAAACGCAAGATCTGCAATA 170
Query 329 AACCTTTTAAGTTCGATGCTATCTCTGTTACCGATGTATACAAATCTGAGCCTTGGGATC 388
|||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 171 AACCCTTTAAGTTTGATGCTATCTCTGTTACCGATGTATACAAATCCGAGCCGTGGGATC 230
Query 389 TCCCAGACAAGTCGAGGCTGAAAAGTAGAGACTTGGAGTGGTACTTCTTCAGTATGCTTG 448
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TCCCAGACAAGTCGAAGCTGAAAAGTAGAGACTTGGAGTGGTACTTCTTCAGTATGCTTG 290
Query 449 ATAAGAAGTATAGAAATGGATCAAAGACGAATCGTGCGACTGAGATGGGATATTGGAAGA 508
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 291 ATAAGAAGTATAGAAATGGATCGAAGACGAATCGTGCCACTGAGATGGGATATTGGAAGA 350
Query 509 CTACAGGGAAAGATCGAGAGATTCTTAATGGTTCAAAAGTCGTTGGGATGAAGAAGACTC 568
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 351 CCACAGGGAAAGATCGAGAGATTCTTAATGGCTCAAAAGTCGTTGGGATGAAGAAGACTC 410
Query 569 TTGTTTATCACAAAGGTCGAGCTCCTCGTGGCGAAAGAACCAATTGGGTTATGCATGAGT 628
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 411 TTGTTTATCACAAAGGTAGAGCTCCTCGTGGCCAAAGAACCAATTGGGTTATGCATGAGT 470
Query 629 ATCGGTTGGTTGATCAAGACCTTGATAAAACTGGTGTTCACCAAGATGCGTTTGTGCTTT 688
|||| |||||| || |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 471 ATCGCTTGGTTCATGAAGACCTTGATAAAACCGGTGTTCACCAAGATGCGTTTGTGCTTT 530
Query 689 GTAGGATTTTTCAGAAGAGTGGCTCCGGACCTAAAAATGGAGAGCAGTACGGTGCTCCGT 748
|||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| |
Sbjct 531 GTAGGATTTTTCAGAAGAGTGGGTCGGGACCTAAAAATGGAGAGCAGTATGGTGCTCCAT 590
Query 749 TTGTTGAGGAGGAGTGGGAGGAGGAGGATGATATGACATTTGTACCTGACCAAGAAGATC 808
|||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 591 TTGTTGAGGAAGAGGGGGAGGAGGAGGATGATATGACATTTGTACCTAATCAAGAAGATC 650
Query 809 TTGGAAGTGAAGATCATGTTTATGTCCATATGGATGACATTGATCAGAAGTCTGAAAACT 868
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 651 TTGGAAGTCAAGATCATGTTTATGTCGATATGGATGACATTGATCAGAAGTCTGAAAACT 710
Query 869 TTGTGGTCTATGATGCCATTCCTATTCCGTTAAACTTTATTCACGGGGAGTCGAGCAATA 928
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 711 TTGTGGTCTATGATGCCATTCCTATCCCGTTAAACTTTATTCACGGGGAGTCGAGCAATA 770
Query 929 ATGTTGAAACAAACTACTCAGACTCCATAAACTATATACAACAAACAGGAAACTATATGG 988
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||
Sbjct 771 ATGTTGAAACAAACTACTCAGACTCCGTAAACTATATACAAC---CAGGAAACTATGTGG 827
Query 989 ACTCTGGTGGCTACTTTGAGCAACCAGCAGAATCTTATGAGAAAGATCAGAAGCCTATCA 1048
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 828 ATTCTGGTGGCTACTTTGAGCAACCAGCAGAATCTTATGAGAAAGATCAGAAGCCTATTA 887
Query 1049 TCCGTGACCGTGA--TGG----T-A-GC---CTT-CAAAATGAAGGAATTGGATGTGGGG 1096
| ||||| || | | | | || ||| ||| | |||| |||||| ||||| |
Sbjct 888 TTCGTGATGGTAACCTTCAAAATGACGCATTCTTTCAAGAGGAAGAAATTGGCTGTGGTG 947
Query 1097 TCCAGGACAAGCACTCGG-AAACTTTGCAATCTTCTGACAACATCTTTGGGACTGATACA 1155
||||||| ||||| | ||| ||||| ||||||||| |||||||||||||||||||||
Sbjct 948 TCCAGGATGAGCACACCTCAAA-TTTGCTATCTTCTGAAAACATCTTTGGGACTGATACA 1006
Query 1156 TCATGCTACAATGATTTTCCAGTTGAGAGCAACTATTTGATTGGTGAGGCGTTTCTGGAT 1215
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1007 TCATGCTACAATGATTTTCCAGTTGAGAGCAACTACTTGACTGGTGAGGCGTTTCTGGAT 1066
Query 1216 CCGAACAGTAATCTTCTGGAGAATGATGGTCTGTACCTGGAAACAAATGATCTCAGTAGT 1275
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1067 CCGAACAGTAATCTTCTGCAGAATGATGGTCTGTACCTGGAAACAAATGATCTCAGCAGT 1126
Query 1276 ACTCAGCAAGATGGTTTCGACTTTGAAGATTATCTTACCTTCTTTGATGA--A--A---- 1327
|| ||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1127 ACCCAGCAAGATGGTTTCGACTTTGAAGATTATCTTACCTTCTTTGATGAGGACGATGAG 1186
Query 1328 ----CT------TT---T---GATCCTTCGCAACTGATGGGAAATGAAGATGtttttttC 1371
|| || | |||||||| ||||||||||||||||||||| ||||| ||
Sbjct 1187 AGTGCTCAAAACTTGACTTTTGATCCTTCTCAACTGATGGGAAATGAAGATATTTTTGTC 1246
Query 1372 GATCAAGAAGAGCTCTTTCAAGAGGTTGAGACTAAGGAACTAGAGAAAGAGGAGACTTCA 1431
||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |||
Sbjct 1247 GATCAAGAAGAGCTCTTCCAAGAGGTCGAGACTAAGGAACTAAAGAAAGAGGAGACGTCA 1306
Query 1432 AGAAGCAAACATGTGGTGGAAGAAAAGGAAAAGGATGAAGCATCTTGTTCAAAACAAGTT 1491
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1307 GGAAGCAAACATGTGGTTGAAGAAAAGGAAAAGGATGAAGCATCTTGCTCAAAACAAGTT 1366
Query 1492 GATGCAGATGCAACAGAGTTTGAGCCAGATTACAAGTACCCGTTACTAAAGAAGGCAAGC 1551
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1367 GATGCAGATGCAACAGAGTTTGAGCCAGATTACAAGTACCCGTTCCTCAAGAAGGCAAGC 1426
Query 1552 CACATGTTGGGTGCTATTCCTGCTCCGCTTGCAAATGCTTCTGAGTTCCCTACAAAGGAT 1611
|||||||||| |||||||||||||||| |||| |||||||||||| ||||||||||||
Sbjct 1427 CACATGTTGGCCGCTATTCCTGCTCCGCCTGCATTTGCTTCTGAGTTGCCTACAAAGGAT 1486
Query 1612 GCAGCTATCCGGTTACACGCAGCACAATCATCAGGTTCAGTTCATGTAACCGCAGGTATG 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1487 GCAGCTATCCGGTTACACGCAGCACAATCATCAGGTTCAGTTCATGTAACCGCAGGTATG 1546
Query 1672 ATCACGATATCAGACAGCAACATGGGCTGGTCATACGGCAAAAACGAGAACCTTGACTTG 1731
||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1547 ATCACAATATCAGACAGCAACATGGGCTGGTCATACGGCAAAAACGGGAACTTTGACTTG 1606
Query 1732 ATCCTTTCTTTGGGGTTGGTCCAAGGGAATACCGCCCCCGA-AAAATCAGGGAATAGTTC 1790
|||||||||||||||||||||||||||||||| ||| |||| |||| |||| ||||||||
Sbjct 1607 ATCCTTTCTTTGGGGTTGGTCCAAGGGAATACTGCCTCCGAGAAAA-CAGGAAATAGTTC 1665
Query 1791 AGCATGGGCAATGTTAATATTCATGTGTTTCTGGGTTCTTC-TACTCTCAGTTAGTTTCA 1849
|||||||||||||||||| ||||||||| ||||||| || | ||||||||||||||||||
Sbjct 1666 AGCATGGGCAATGTTAATCTTCATGTGTCTCTGGGTCCT-CGTACTCTCAGTTAGTTTCA 1724
Query 1850 AAGTGAGCATTTTGGTCTCTTCCAGGTGATAGGTAACCCTTTCTTGTTCAAACAAGACTT 1909
||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||
Sbjct 1725 AAGTGAGCATTTTGGTCTCTTCCGGGTGATAGGTACCCCTTTCTT-TTCAAACAAGACTT 1783
Query 1910 TTGTGTTTGTACATTGATATAGATGAACTTGCAGTGTTC--------AATGTTTTATTCT 1961
|||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1784 TTGTGTTTGTACATTGATATAGATTTACTTGCAGTGTTCTGCTGCTCAATGTTTTATTCT 1843
Query 1962 CTAATAATATTGAATAAA 1979
||||| ||||||||||||
Sbjct 1844 CTAATTATATTGAATAAA 1861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75990038775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5