BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G10520.1

Length=862
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928746 jgi|Araly1|928746|scaffold_301203.1                        887    0.0  


> Ahg928746 jgi|Araly1|928746|scaffold_301203.1
Length=520

 Score =  887 bits (480),  Expect = 0.0
 Identities = 506/518 (98%), Gaps = 3/518 (1%)
 Strand=Plus/Plus

Query  78   aaagaaagagagaaagagatgggagagattgggtttacagagaagcaagaagCTTTGGTG  137
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  3    AAAGAAAGAGAGAAAGAGATGGGAGAGATTGGGTTTACAGAGAAGCAAGAAGCTTTGGTG  62

Query  138  AAGGAATCGTGGGAGATACTGAAACAAGACATCCCCAAATACAGCCTTCACTTCTTCTCA  197
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  63   AAGGAATCGTGGGAGATACTGAAACAAGACATCCCCAAATACAGCCTTCACTTCTTCTCA  122

Query  198  CAGATACTGGAGATAGCACCAGCAGCAAAAGGCTTGTTCTCTTTCCTAAGAGACTCAGAT  257
            |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  123  CAGATATTGGAGATAGCACCAGCAGCAAAGGGCTTGTTCTCTTTCCTAAGAGACTCAGAT  182

Query  258  GAAGTCCCTCACAACAATCCTAAACTCAAAGCTCATGCTGTTAAAGTCTTCAAGATGACA  317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  183  GAAGTCCCTCACAACAATCCTAAACTCAAAGCTCATGCTGTTAAAGTCTTCAAGATGACA  242

Query  318  TGTGAAACAGCTATACAGCTGAGGGAGGAAGGAAAGGTGGTAGTGGCTGACACAACCCTC  377
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  243  TGTGAAACAGCTATACAGCTGAGGGAGAAAGGAAAGGTGGTAGTGGCTGACACAACCCTC  302

Query  378  CAATATTTAGGCTCAATTCATCTCAAAAGCGGCGTTATTGACCCTCACTTCGAGGTGGTG  437
            ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  303  CAATACTTGGGCTCAATTCATCTCAAAAGCGGCGTTATTGACCCTCACTTCGAGGTGGTG  362

Query  438  AAAGAAGCTTTGCTAAGGACATTGAAAGAGGGGTTGGGGGAGAAATACAATGAAGAAGTG  497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  363  AAAGAAGCTTTGCTAAGGACATTGAAAGAGGGGTTGGGGGAGAAATACAATGAAGAAGTG  422

Query  498  GAAGGTGCTTGGTCTCAAGCTTATGATCACTTGGCTTTAGCCATCAAGACCGAGATGAAA  557
            ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  423  GAAGGAGCTTGGTCTCAAGCTTATGATCACTTGGCTTTAGCCATTAAGACCGAGATGAAA  482

Query  558  CAAGAAGA---GTCATAAAACCCTATTGATCATTTGGG  592
            ||||||||   ||||||||||| || ||||||||||||
Sbjct  483  CAAGAAGATCAGTCATAAAACCTTAATGATCATTTGGG  520



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31908881529


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5