BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10525.1
Length=671
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478386 jgi|Araly1|478386|fgenesh2_kg.3__1087__AT3G10525.1 1048 0.0
> Ahg478386 jgi|Araly1|478386|fgenesh2_kg.3__1087__AT3G10525.1
Length=663
Score = 1048 bits (567), Expect = 0.0
Identities = 638/671 (95%), Gaps = 9/671 (1%)
Strand=Plus/Plus
Query 1 AAGAAGTTTTCTCTACATCCACaaaagaaaaaaagtttcccaaaaaacaaaaaCATACAC 60
|||||||||||||| ||||||| | ||||||||||||||||| ||| |||||| ||||
Sbjct 1 AAGAAGTTTTCTCTCCATCCAC---ACAAAAAAAGTTTCCCAAATAAC-AAAACACACAC 56
Query 61 AAGTTTAGATATGGATCTTGAATTACTACAAGATTTGTCCAAATTCAATTTCCCAACACC 120
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 57 AAGTTTAGATATGGATCTTGAGTTATTACAAGATTTGTCCAAATTCAATTTCCCAACACC 116
Query 121 CATCAAGATCCGATCCAAAACCTCAAAAACAAAGAAGGACGAAGGTGATGACGACGAAGA 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 117 CATCAAGATCCGATCCAAAACCTCAAAAACCAAGAAGGACGAAGGTGATGACGACGAAGA 176
Query 181 TGACCTCCGCTGCAGCACACCCACATCCCAAGAACACAAGATTCCCGCCGTCGTAGACTC 240
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TGGCCTCAGCTGCAGCACACCCACATCCCAAGAACACAAGATTCCCGCCGTCGTAGACTC 236
Query 241 TCCACCTCCTCCGCCGAGAAAACCCCGGCCACCACCGTCAGCACCGTCGGCTACGGCGGC 300
||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 237 TCCACCTCCCCCGCCGCGAAAACCCCGACCACCACCGTCAGCACCGTCGGCTACGGCGGC 296
Query 301 TCTGATGATCAGATCGTGCAAGAGGAAGCTTTTAGTGTCGACTTGTGAGATAATCATGAA 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 297 TCTGATGATCAGATCGTGCAAGAGGAAGCTTTTAGTGTCTACTTGTGAGATAATCATGAA 356
Query 361 TCGGGAAGAGATTGACCGTTTCTTCTCCTCCGTCTACAATGAGACGTCGACTACGGCTAA 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 357 TCGGGAAGAGATTGACCGTTTCTTCTCCTCCGTATACAATGAGACGTCGACTACGGCTAA 416
Query 421 ACGGCGGAGAAGTTACCCTTATTGTTCTCGAAGATGAGGCTTAATTCAATATTTACAttt 480
| ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||
Sbjct 417 AAGGCGGAGAAGTTATCCATATTGTGCTCGAAGATGAGGCTTAATTCAATATTTACATTT 476
Query 481 ttttACAGTTTTACTGGAAATATTGTGAAATTAATTATCTGTTGGTGTTCGGTTTTAAAT 540
||| |||||||||||||||||||||||||||||||| | |||||||||| | |||||| |
Sbjct 477 TTT-ACAGTTTTACTGGAAATATTGTGAAATTAATTTTATGTTGGTGTTTGATTTTAA-T 534
Query 541 ATTTTTAATTTAATTATGAATATGGATGGATAATTTTC-TGCAACCGCGCATATTAATTT 599
|||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||
Sbjct 535 ATTTTTAATTTAATTATGAATATGGATGGATAATTTCCCTGCAACCGC--ATATTAATTT 592
Query 600 CGCATGGAGGGGTCGATGTTGTAAATTGAGTAATAAATGAAATTTAATTCCAATTGCCAA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CGCATGGAGGGGTCGATGTTGTAAATTGAGTAATAAATGAAATTTAATTCCAATTGCCAA 652
Query 660 GTTTTCTATAC 670
| |||||||||
Sbjct 653 GATTTCTATAC 663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24627404382
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5