BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G10526.1

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478387 jgi|Araly1|478387|fgenesh2_kg.3__1088__AT3G10526.1         183    2e-46


> Ahg478387 jgi|Araly1|478387|fgenesh2_kg.3__1088__AT3G10526.1
Length=168

 Score =  183 bits (99),  Expect = 2e-46
 Identities = 103/105 (98%), Gaps = 0/105 (0%)
 Strand=Plus/Plus

Query  58   AGTGCGAGTGAATTAAGGAGGGCCATAACTCATGAAACAAACGCAAATGGTGTTCTCGTA  117
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  61   AGTGGGAGTGAATTAAGGAGGGCCATAACTCATGAAACAAACGCAAATGGTGTTGTCGTA  120

Query  118  CCATCGGTCTCCTATCTAAAGACGTGTGGGTTATGGTCTCAACAA  162
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CCATCGGTCTCCTATCTAAAGACGTGTGGGTTATGGTCTCAACAA  165



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 5651862628


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5