BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10530.1
Length=2036
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478388 jgi|Araly1|478388|fgenesh2_kg.3__1089__AT3G10530.1 3014 0.0
> Ahg478388 jgi|Araly1|478388|fgenesh2_kg.3__1089__AT3G10530.1
Length=1844
Score = 3014 bits (1632), Expect = 0.0
Identities = 1760/1822 (97%), Gaps = 7/1822 (0%)
Strand=Plus/Plus
Query 9 AAAATATACAAAACCCTCAAATTCAGTCTACCAGCGAGGATCGATGTCGGAGCTCACAGT 68
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 AAAA-ATACAAAACCCTCAAATTCAGTCAACCAGCGAGGATCGATGTCGGAGCTCACAGT 59
Query 69 ATCTCCTTTCACGCATTAACTCAATTTATCTGCTAAACCCTAAATAGCTTCACGCCGTTT 128
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 60 ATCTCCTTTCACGCATTAACTCAATTTATCTGCTAAACCCTAAATAGCTTCACACCGTTT 119
Query 129 TTCTAATTCTCAATCAAAGCTTCACCGCCGCCGTGTGTTGTTCTTTCTCCGAGTC-GTGT 187
|||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||
Sbjct 120 TTCTAATTCTCAATCAAATCTTCACCGCCGCCGTGTGTTGTTCTTTCTCCGAG-CTGTGT 178
Query 188 TCTCTAATCTCAGGTGATAAGGATCAAGATGGAGATTAGTTCAGAGGATAACAATCTTAT 247
|| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 179 TCCCTATTCTCAGGTGATAAGGATCAAGATGGAGATGAGTTCAGAGGATAACAATCTTAT 238
Query 248 GGAGAAGGTTTTGCCTCCTGTTGAGCAGGAGAGTGATGTTGAGCTGGAGACTAAAGTTAA 307
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 239 GGAGAAAGTTTTGCCTCCTGTTGAGCAGGAGAGTGATGTTGAGTTGGAGACTAAAGTTAA 298
Query 308 GAAATATCTTAGAGGAGAAGGTGCTAATCTTGAGACATTGAAAGATAAGAAACTAAAGAC 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GAAATATCTTAGAGGAGAAGGTGCTAATCTTGAGACATTGAAAGATAAGAAACTAAAGAC 358
Query 368 TCAACTTGCTTCACGAGAAAAGTTGTATGGGAAGTCTGCCAAAGCTGCTGCTAAAATCGA 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TCAACTTGCTTCACGAGAAAAGTTGTATGGGAAGTCTGCCAAAGCTGCTGCTAAAATCGA 418
Query 428 GAAGTGGCTCTTGCCTGCTGAGGCAGGTTACTTGGAGACTGAAGGTCTAGAGAAGACATG 487
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 419 GAAGTGGCTCTTGCCTGCTGAGGCAGGCTACTTGGAGACTGAAGGTCTAGAGAAGACATG 478
Query 488 GCGAGTAAAGCAGACAGATATTGCCAACGAAGTAGATATATTAAGTTCAAGAAACCAATA 547
|||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 479 GCGAGTCAAGCAGACAGATATTGCCAATGAAGTAGATATATTAAGCTCAAGAAACCAATA 538
Query 548 TGACATAGTGCTCCCAGATTTTGGCCCGTACAAACTTGATTTTACTGCAAGTGGTCGGCA 607
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 539 TGACATAGTGCTCCCAGATTTTGGCCCATACAAACTTGATTTTACGGCGAGTGGTCGGCA 598
Query 608 TATGTTAGCTGGTGGTCGCAAAGGTCACCTTGCTCTTTTAGACATGATGAATATGAGCTT 667
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 599 TATGTTAGCTGGTGGTCGCAAAGGCCACCTTGCTCTTTTAGACATGATGAATATGAGCTT 658
Query 668 AATTAAAGAGATTCAGGTAAGAGAAACAGTACGCGATGTTGCATTCCTGCACAATGATCA 727
||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 659 AATTAAAGAGATTCAGGTAAGAGAAACAGTACGTGATGTTGCATTCCTGCACAACGAACA 718
Query 728 ATTCTTTGCAGCTGCACAGAAAAAGTATGCTTATATTTATGGGAGAGATGGAACTGAGCT 787
||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 719 ATTCTTTGCAGCTGCCCAGAAGAAGTATGCTTATATATATGGGAGAGATGGAACTGAGCT 778
Query 788 GCATTGTTTGAAGGAACGTGGTCCAGTGGCCAGACTTCGGTTCCTAAAGAACCATTTCCT 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GCATTGTTTGAAGGAACGTGGTCCAGTGGCCAGACTTCGGTTCCTAAAGAACCATTTCCT 838
Query 848 GCTTGCATCAGTAAACATGTCTGGGCAGCTACATTATCAAGATGTAACCCATGGAGGCAT 907
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 839 ACTTGCATCAATAAACAAATCTGGGCAGCTACATTATCAAGATGTAACCCATGGAGGCAT 898
Query 908 GGTCGCTAGTATCCGAACAGGTAAAGGCCGAACAGATGTAATGGAAGTGAATCCTTACAA 967
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GGTTGCTAGTATCCGAACAGGTAAAGGCCGAACAGATGTAATGGAAGTGAATCCTTACAA 958
Query 968 TAGTGTTGTTGGCTTGGGACATTCCGGTGGAACTGTCACAATGTGGAAACCCACTAGCCA 1027
| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 959 TGGTGTTGTTGCCTTGGGACATTCTGGTGGAACTGTCACAATGTGGAAACCCACTAGCCA 1018
Query 1028 AGCACCTCTTGTCCAGATGCAGTGTCACCCTGGGCCAGTGTCATCTGTCGCATTTCATCC 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AGCACCTCTTGTCCAGATGCAGTGTCACCCTGGGCCAGTGTCATCTGTCGCATTTCATCC 1078
Query 1088 AAATGGTCATCTCATGGCTACATCCGGTAAAGAGCGTAAAATCAAGATCTGGGATTTACG 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AAATGGTCATCTCATGGCTACATCCGGTAAAGAGCGTAAAATCAAGATCTGGGATTTACG 1138
Query 1148 TAAATTCGAGGAAGTTCAGACTATTCACAGTTTTCATGCAAAAACGCTGAGTTTCAGTCA 1207
||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 1139 TAAATTCGAGGAAGTTCAGACGATCCACAGTTTTCATGCCAAAACGCTGAGTTTCAGTCA 1198
Query 1208 GAAAGGTTTGCTAGCAGCTGGAACTGGATCGTTTGTTCAGATTTTAGGAGATTCGAGTGG 1267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GAAAGGTTTGCTAGCAGCTGGAACTGGATCGTTTGTTCAGATTTTAGGAGATTCGAGTGG 1258
Query 1268 TGGTTCTTCACATAACTACACTAGATACATGAACCACTCGATGGTGAAAGGTTATCAAAT 1327
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGGTTCTTCACATAACTATAGTAGATACATGAACCACTCGATGGTGAAAGGTTATCAAAT 1318
Query 1328 CGAGAAGGTTATGTTCAGACCATATGAGGATGTTATTGGAATTGGTCACTCGATGGGTTG 1387
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1319 CGAGAAGCTTATGTTCAGACCATATGAGGATGTTATTGGGATTGGTCACTCGATGGGCTG 1378
Query 1388 GTCTAGCATTCTAATTCCAGGGTCTGGAGAACCCAATTTCGATTCTTGGGTGGCTAATCC 1447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GTCTAGCATTCTAATTCCAGGGTCTGGAGAACCCAATTTCGATTCTTGGGTGGCTAATCC 1438
Query 1448 ATTTGAAACATCGAAACAGAGACGGGAGAAGGAAGTCCATTCGCTTCTTGATAAACTTCC 1507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 ATTTGAAACATCGAAACAGAGACGGGAGAAGGAAGTCCATTCGCTTCTTGATAAACTTCC 1498
Query 1508 ACCTGAGACAATCATGCTGGACCCTTCAAAGATTGGTGCGATGAGACCCTCTAGGAGGAA 1567
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 ACCTGAGACAATAATGCTCGACCCTTCAAAGATTGGTGCGATGAGACCCTCTAGGAGGAA 1558
Query 1568 AGAGAAGCCATCAAGAGGAGAGATAGAAGCTGAGAAGGAGGTGGCCATAGAAGCAGCAAA 1627
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1559 AGAGAAGCCATCAAGAGGAGAGATAGAAGCTGAAAAAGAGGTGGCCATAGAAGCAGCAAA 1618
Query 1628 GAGCACTGAGCTGAAGAACAAGACGAAAGGAAGGAATAAGCCGAGCAAGCGGACTAAGAA 1687
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1619 GAGCACTGAGCTGAAGAACAAGACGAAAGGAAGGAATAAACCGAGCAAGCGGACCAAGAA 1678
Query 1688 GAAGAAAGAGATGGTGGAGAATGCAAAGCGAACATTCCCGGAGCAAGAGCACAATACCGC 1747
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1679 GAAGAAAGAGATGGTGGAGAACGCAAAGCGAACATTCCCGGAGCAAGAGCACAACACTGC 1738
Query 1748 GATT-AAGAAGAGAAGAATCGTAGAAGATGCTGCTGCTGAGCTACCAACGAGTTTAAAAA 1806
| || |||||||||||||||| |||||||||||| || |||||||| ||||||| || |
Sbjct 1739 G-TTGAAGAAGAGAAGAATCGGAGAAGATGCTGCGGCGGAGCTACCGGCGAGTTTGAAGA 1797
Query 1807 GGTTTGC-CAGGAAAAACTGAA 1827
| ||||| | ||||||||||||
Sbjct 1798 GATTTGCAC-GGAAAAACTGAA 1818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76561392450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5