BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10540.1
Length=1955
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928751 jgi|Araly1|928751|scaffold_301208.1 2529 0.0
Ahg487232 jgi|Araly1|487232|fgenesh2_kg.6__366__AT5G04510.1 1539 0.0
Ahg928759 jgi|Araly1|928759|scaffold_301216.1 169 9e-41
Ahg928760 jgi|Araly1|928760|scaffold_301217.1 128 1e-28
> Ahg928751 jgi|Araly1|928751|scaffold_301208.1
Length=1501
Score = 2529 bits (1369), Expect = 0.0
Identities = 1458/1502 (97%), Gaps = 1/1502 (0%)
Strand=Plus/Plus
Query 202 AATGTAGAACAAGTTTGGAGATGTTGACAATGGACAAGGAATTTGATTCAAAGCTTACTC 261
||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1 AATGTAGAAGAAGTTGGGAGATGTTGACAATGGAGAAGGAATTTGATTCAAAGCTTGCTC 60
Query 262 TTCAAGGGAATTCATCTTCAAATGGTGAAACTATTTCCAGAAGCAAAAGCTTCGCCTTTA 321
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 TTCAAGGGAATTCATCTTCTAATGGTGCAACTATTTCCAGAAGCAAAAGCTTCGCCTTTA 120
Query 322 AGGCTCCTCAGGAGAATTTCACTTACCATGATTTCGAGCTCGGCAAGATCTATGGCGTTG 381
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 AGGCTCCTCAGGAGAATTTCACCTACCATGATTTCGAGCTCGGCAAGATCTATGGCGTTG 180
Query 382 GCTCTTATTCTAAGGTTGTTAGGGCGAAGAAGAAGGATAATGGAACTGTGTATGCCTTGA 441
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 GCTCTTATTCAAAGGTTGTTAGGGCGAAGAAGAAGGATAATGGAACTGTGTATGCCTTAA 240
Query 442 AGATCATGGACAAAAAGTTTATCACCAAGGAGAATAAAACAGCTTATGTCAAATTGGAGA 501
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 241 AGATCATGGACAAAAAGTTTATCACCAAGGAGAATAAAACTGCTTATGTCAAATTGGAGA 300
Query 502 GGATTGTTCTTGATCAACTCGAACATCCCGGGATTGTGAAACTCTTCTTTACGTTTCAGG 561
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 301 GGATTGTTCTTGATCAACTCGAACATCCCGGGATTGTGAAACTCTTCTTTACTTTTCAAG 360
Query 562 ATACACAATCACTATACATGGCGCTTGAGTCTTGTGAAGGTGGGGAACTTTTCGACCAAA 621
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 361 ATACACAATCACTATACATGGCGCTTGAATCTTGCGAAGGTGGGGAACTTTTCGACCAAA 420
Query 622 TCACCAGAAAAGGTCGTCTATCTGAGGATGAAGCTCGGTTCTACAGTGCAGAAGTTGTTG 681
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
Sbjct 421 TCACCAGAAAAGGTCGTCTGTCAGAGGATGAAGCTCGGTTCTACAGTGCAGAAGTTGTGG 480
Query 682 ATGCTCTTGAGTATATACATAATATGGGACTGATACATCGAGATATTAAGCCGGAGAATC 741
| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 481 ACGCTCTTGAGTATATACATAATATGGGACTGATACATCGAGATATCAAGCCAGAGAATC 540
Query 742 TGTTGTTAACTTTAGATGGGCACATAAAGATTGCTGATTTTGGTAGCGTAAAGCCAATGC 801
|||||||||||| |||||| || || |||||||| |||||||||||||||||||||||||
Sbjct 541 TGTTGTTAACTTCAGATGGACATATTAAGATTGCCGATTTTGGTAGCGTAAAGCCAATGC 600
Query 802 AAGACAGCCAAATCACAGTGCTTCCTAATGCGGCTTCTGATGATAAGGCGTGCACTTTTG 861
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 601 AAGACAGCCAAATCACAGTGCTTCCTAACGCGGCTTCCGATGATAAGGCGTGCACTTTTG 660
Query 862 TCGGGACGGCTGCATATGTTCCTCCTGAAGTTCTAAACTCCTCTCCAGCAACGTTCGGAA 921
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 661 TCGGGACGGCTGCATATGTTCCTCCTGAAGTTCTAAACTCCTCTCCAGCAACTTTCGGAA 720
Query 922 ATGATCTCTGGGCACTCGGCTGCACTCTGTACCAAATGCTTTCAGGAACTTCCCCATTCA 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATGATCTCTGGGCACTCGGCTGCACTCTGTACCAAATGCTTTCAGGAACTTCCCCATTCA 780
Query 982 AGGATGCAAGTGAATGGCTGATTTTCCAAAGAATTATAGCTAGAGATATAAAGTTTCCAA 1041
| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 781 AAGATGCAAGCGAATGGCTAATTTTCCAAAGAATCATAGCTAGAGATATAAAGTTTCCAA 840
Query 1042 ATCATTTCTCAGAAGCAGCAAGAGACCTCATCGACCGATTGCTAGATACAGATCCTAGTA 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATCATTTCTCAGAAGCAGCAAGAGACCTCATCGACCGATTGCTAGATACAGATCCTAGTA 900
Query 1102 GAAGACCAGGAGCTGGATCAGAAGGTTATGATTCTCTCAAGAGACATCCTTTCTTCAAGG 1161
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 901 GAAGACCAGGAGCTGGATCAGAAGGTTATGCTTCTCTCAAGAGACATCCTTTCTTCAAGG 960
Query 1162 GAGTTGACTGGAAGAACCTAAGGTCACAAACTCCTCCAAAACTAGCTCCAGATCCTGCGT 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GAGTTGACTGGAAGAACCTAAGGTCACAAACTCCTCCAAAACTAGCTCCAGATCCTGCGT 1020
Query 1222 CTCAATCAGCATCTCCTGAGAGGGACGGTTCTCCATGGAATCCAACACATGTTGGAGATA 1281
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1021 CTCAATCAGCATCTCCTGAGAGGGACGGTTCTCCATGGAACCCAACACATGTTGGAGATA 1080
Query 1282 CCTCAGTCTTGCAGAACGATGGACACAATGGACTCTCTGAATCCTCAGGTTCCATAACTC 1341
| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1081 CATCAGTCTTGCAGAACGATGGACACAACGGACTCTCTGAATCTTCAGGTTCCATAACTC 1140
Query 1342 GGCTTGCCTCCATAGACTCTTTCGATTCAAGATGGCAACAGTTTCTAGAACCGGGAGAAT 1401
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1141 GGCTTGCCTCCATAGACTCTTTTGATTCGAGATGGCAACAGTTTCTAGAACCGGGAGAAT 1200
Query 1402 CGGTTCTAATGATATCAGCAGTGAAGAAGCTACAGAAAATCACAAGTAAGAAGGTGCAGC 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CGGTTCTAATGATATCAGCAGTGAAGAAGCTACAGAAAATCACAAGTAAGAAGGTGCAGC 1260
Query 1462 TAATACTCACCAACAAACCAAGACTGATATACGTTGACCCATCAAAGCTTGTAGTAAAAG 1521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TAATACTCACCAACAAACCAAGACTGATATACGTTGACCCATCAAAGCTTGTAGTAAAAG 1320
Query 1522 GGAATATTATCTGGTCTGATAACTCCAACGACCTCAACGTTCAAGTCTCAAGTCCTTCCC 1581
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GGAACATTATCTGGTCTGATAACTCCAACGACCTCAACGTTCAAGTCTCAAGTCCTTCCC 1380
Query 1582 ATTTCAAGATTTGCACACCGAAGAAAGTTTTATCGTTTGAAGATGCGAAGCAAAGAGCTT 1641
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1381 ATTTCAAGATTTGCACACCGAAGAAAGTTTTATCGTTTGAAGATGCGAAACAAAGAGCTT 1440
Query 1642 TGCAGTGGAAAAAGGCAATCGAAACTCTTCAAAACCGTTGAGACTCGTAGCTGATGGTGT 1701
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||
Sbjct 1441 TGCAGTGGAAAAAGGCAATCGAAACTCTTCAAAACCGTTGAGACTCTT-GCTGATGATGT 1499
Query 1702 CA 1703
||
Sbjct 1500 CA 1501
> Ahg487232 jgi|Araly1|487232|fgenesh2_kg.6__366__AT5G04510.1
Length=1855
Score = 1539 bits (833), Expect = 0.0
Identities = 1304/1526 (85%), Gaps = 53/1526 (3%)
Strand=Plus/Plus
Query 188 ATGGGTC-TCGTCGAAATGTAGAACAAGTTTGGAGATGTTGACAATGGACAAGGAATTTG 246
||||||| | |||| |||||||| || ||| |||||| ||||||| || || ||||
Sbjct 202 ATGGGTCGT-ATCGAGATGTAGAAGAA-AAGGGAAATGTTGGCAATGGAGAAAGATTTTG 259
Query 247 ATTCAAAGCTTACTCTTCAAGGGAATTCATCTTCAAATGGTG-AAACTATTTCCAGAAGC 305
||||||||||| |||||||||| | | | |||| || | |||||||||||
Sbjct 260 ATTCAAAGCTTGTTCTTCAAGGG-A---A----C----GGTGCTAA-TGTTTCCAGAAGC 306
Query 306 AAAAGCTTCGCCTTTAAGGCTCCTCAGGAGAATTTCACTTA-CCATGATTTCGAGCTCGG 364
|| |||||| ||||||| |||||||| || |||||||| | |||||||||||| || ||
Sbjct 307 AAGAGCTTCTCCTTTAAAGCTCCTCAAGAAAATTTCAC-CAGCCATGATTTCGAACTTGG 365
Query 365 CAAGATCTATGGCGTTGGCTCTTATTCTAAGGTTGTTAGGGCGAAGAAGAAGG-ATAATG 423
|||||||||||| ||||| ||||| || |||||||||||||| |||||||||| || ||
Sbjct 366 CAAGATCTATGGTGTTGGTTCTTACTCAAAGGTTGTTAGGGCAAAGAAGAAGGAAT-CTG 424
Query 424 GAACTGTGTATGCCTTGAAGATCATGGACAAAAAGTTTATCACCAAGGAGAATAAAACAG 483
||||||||||||| || ||||| |||||||||| |||||| ||||||||||||||||||
Sbjct 425 GAACTGTGTATGCTTTAAAGATTATGGACAAAAGGTTTATTACCAAGGAGAATAAAACAT 484
Query 484 CTTATGTCAAATTGGAGAGGATTGTTCTTGATCAACTCGAACATCCCGGGATTGTGAAAC 543
||||||| |||||||| |||||||||||||||||||| |||||||| ||||| | ||||
Sbjct 485 CTTATGTGAAATTGGAAAGGATTGTTCTTGATCAACTTGAACATCCTGGGATCATTAAAC 544
Query 544 TCTTCTTTACGTTTCAGGATACA-CAATCACTATACATGGCGCTTGAGTCTTGTGAAGGT 602
| | ||| || ||||| |||||| | |||||||| ||||| ||||| |||||||| |||
Sbjct 545 TATACTTCACATTTCAAGATACATC-CTCACTATATATGGCACTTGAATCTTGTGAGGGT 603
Query 603 GGGGAACTTTTCGACCAAATCACCAGAAAAGGTCGTCTATCTGAGGATGAAGCTCGGTTC 662
|| || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 604 GGCGAGCTTTTCGACCAAATAACCAGAAAAGGTCGTCTATCGGAGGATGAAGCTCGGTTC 663
Query 663 TACAGTGCAGAAGTTGTTGATGCTCTTGAGTATATACATAATATGGGACTGATACATCGA 722
|||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 664 TACACTGCAGAAGTTGTGGATGCTCTTGAGTATATACATAGTATGGGACTGATACATCGA 723
Query 723 GATATTAAGCCGGAGAATCTGTTGTTAACTTTAGATGGGCACATAAAGATTGCTGATTTT 782
|||||||||||||||||||||||| | |||| ||||||||||| |||||||| ||||||
Sbjct 724 GATATTAAGCCGGAGAATCTGTTGCTGACTTCGGATGGGCACATTAAGATTGCGGATTTT 783
Query 783 GGTAGCGTAAAGCCAATGCAAGACAGCCAAATCACAGTGCTTCCTAATGCGGCTTCTGAT 842
||||| |||||||| ||||| || ||||| |||||||| ||||||||||| ||||||||
Sbjct 784 GGTAGTGTAAAGCCGATGCAGGATAGCCAGATCACAGTACTTCCTAATGCAGCTTCTGAC 843
Query 843 GATAAGGCGTGCACTTTTGTCGGGACGGCTGCATATGTTCCTCCTGAAGTTCTAAACTCC 902
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 844 GATAAGGCGTGCACTTTTGTCGGGACTGCTGCATATGTTCCTCCAGAAGTTCTCAACTCC 903
Query 903 TCTCCAGCAAC-GTTCGGAAATGATCTCTGGGCACTCGGCTGCACTCTGTACCAAATGCT 961
||||| ||||| || |||||||||||||||||| |||||||||||||| || ||||||||
Sbjct 904 TCTCCTGCAACTGT-CGGAAATGATCTCTGGGCTCTCGGCTGCACTCTCTATCAAATGCT 962
Query 962 TTCAGGAACTTCCCCATTCAAGGATGCAAGTGAATGGCTGATTTTCCAAAGAATTATAGC 1021
|||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 963 TTCAGGGACTTCTCCATTCAAAGACGCAAGTGAATGGCTGATTTTCCAAAGAATTATAGC 1022
Query 1022 TAGAGATATAAAGTTTCCAAATCATTTCTCAGAAGCAGCAAGAGACCTCATCGACCGATT 1081
|||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| ||
Sbjct 1023 CAGAGATATAAAGTTCCCAAATCATTTTTCAGAAGAAGCAAGAGACCTCATCGACCGCTT 1082
Query 1082 GCTAGATACAGATCCTAGTAGAAGACCAGGAGCTGGATCAGAAGGTTATGATTCTCTCAA 1141
|| ||||| ||||| || ||||||||||| ||||| ||||||||||||| | |||| ||
Sbjct 1083 ACTGGATACCGATCCAAGCAGAAGACCAGGTGCTGGTTCAGAAGGTTATGCTGCTCTTAA 1142
Query 1142 GAGACATCCTTTCTTCAAGGGAGTTGACTGGAAGAACCTAAGGTCACAAACTCCTCCAAA 1201
|| |||||||||||| || ||||||||||||||||| |||||||| || |||||||||||
Sbjct 1143 GAAACATCCTTTCTTTAATGGAGTTGACTGGAAGAATCTAAGGTCCCAGACTCCTCCAAA 1202
Query 1202 ACTAGCTCCAGATCCTGCGTCTCA-ATCAGCATCTCCTGAGAGGGA---CG-G--T--T- 1251
|||||||||||||||||||||||| | |||||||||| |||||||| || | | |
Sbjct 1203 ACTAGCTCCAGATCCTGCGTCTCAGA-CAGCATCTCCCGAGAGGGATGACGCGCATGGTT 1261
Query 1252 CTCCATGGAATCCAA-CACATGTTGGAGATACCTCAGTCTTGCAGAACGATGGACACAAT 1310
| |||||||| || ||||| |||||||| | | | | |||||||| || || | |
Sbjct 1262 CACCATGGAA-CCTGTCACATATTGGAGATTCTTTACCCACACAGAACGAGGGGCATAGT 1320
Query 1311 GG-------AC-TCT-CTGAATCCTCAGGTTCCATAACTCGGCTTGCCTCCATAGACTCT 1361
| || ||| ||||||| || |||||||||||||| ||||| || |||||||||
Sbjct 1321 GCTCCTTCTACATCTTCTGAATCATCGGGTTCCATAACTCGACTTGCTTCAATAGACTCT 1380
Query 1362 TTCGATTCAAGATGGCAACAGTTTCTAGAACCGGGAGAATCGGTTCTAATGATATCAGCA 1421
|| ||||||||||||||||||||| | || || |||||||| ||||| |||||||||||
Sbjct 1381 TTTGATTCAAGATGGCAACAGTTTTTGGAGCCAGGAGAATCAGTTCTGATGATATCAGCC 1440
Query 1422 GTGAAGAAGCTACAGAAAATCACAAGTAAGAAGGTGCAGCTAATACTCACCAACAAACC- 1480
||||||||||| |||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1441 GTGAAGAAGCTTCAGAAAATAACGAGCAAGAAGGTGCAGCTAATACTCACCAACAAACCC 1500
Query 1481 AAGACTGATATACGTTGACCCATCAAAGCTTGTAGTAAAAGGGAATATTATCTGGTCTGA 1540
||| ||||| || || ||||| ||||| || || || ||||| || ||||| ||||||||
Sbjct 1501 AAG-CTGATCTATGTCGACCCGTCAAAACTAGTTGTGAAAGGAAACATTATATGGTCTGA 1559
Query 1541 TAACTCCAACGACCTCAACGTTCAAGTCTCAAGTCCTTCCCATTTCAAGATTTGCACACC 1600
|||||| || ||||||||||||| |||| | || ||||| ||||||||||||||||| ||
Sbjct 1560 TAACTCGAATGACCTCAACGTTCTAGTCACTAGCCCTTCACATTTCAAGATTTGCACGCC 1619
Query 1601 GAAGAAAGTTTTATCGTTTGAAGATGCGAAGCAAAGAGCTTTGCAGTG-G-AAAAAGGCA 1658
||||| |||||||| |||||||| || || || ||||||| ||||| | |||||||||
Sbjct 1620 AAAGAAGGTTTTATCATTTGAAGACGCAAAACAGAGAGCTT--CAGTGTGGAAAAAGGCA 1677
Query 1659 ATCGAAACTCTTCAAAACCGTTGAGA 1684
||||| |||||||| ||||| |||||
Sbjct 1678 ATCGAGACTCTTCAGAACCGCTGAGA 1703
> Ahg928759 jgi|Araly1|928759|scaffold_301216.1
Length=272
Score = 169 bits (91), Expect = 9e-41
Identities = 101/106 (95%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 218 GGAGATGTTGACAATGGACAAGGAATTTGATTCAAAGCTTACTCTTCAAGGGAATTCATC 277
|||||||||||| | ||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 17 GGAGATGTTGACTACGGAGAAGGAATTTGATTCAAAGCTTGCTCTTCAAGGGAATTCATC 76
Query 278 TTCAAATGGTGAAACTATTTCCAGAAGCAAAAGCTTCGCCTTTAAG 323
|||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 77 TTCAAATGGTGAAACTATTTCCAGAAGCAAAAGCCTCGCCTTTAAG 122
Score = 169 bits (91), Expect = 9e-41
Identities = 127/142 (89%), Gaps = 12/142 (8%)
Strand=Plus/Plus
Query 435 GCCTTGAAGATCATGGACAAAAAGTTTATCACCAAGGAGAATAAAACAGCTTATGTCAAA 494
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 GCCTTTAAGATCATGGACAAAAAGTTTATCACCAAGGAGAATAAAACAGCTTATGTCAAA 173
Query 495 TTGGAGAGGATTGTTCTTGATCAACTCGAACATCCCGGGATTGTGAAACTCTTCTTTACG 554
|||||||||||||||||||||| | || || ||||||||||||||||||||
Sbjct 174 TTGGAGAGGATTGTTCTTGATC--C-CG--------GG-ATTGTGAAACTCTTCTTTACT 221
Query 555 TTTCAGGATACACAATCACTAT 576
||||| ||||||||||||||||
Sbjct 222 TTTCAAGATACACAATCACTAT 243
> Ahg928760 jgi|Araly1|928760|scaffold_301217.1
Length=1307
Score = 128 bits (69), Expect = 1e-28
Identities = 77/81 (95%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 652 AAGCTCGGTTCTACAGTGCAGAAGTTGTTGATGCTCTTGAGTATATACATAATATGGGAC 711
||| |||||||||||||||| ||||||| || ||||||||||||||||||||||||||||
Sbjct 73 AAGGTCGGTTCTACAGTGCACAAGTTGTGGACGCTCTTGAGTATATACATAATATGGGAC 132
Query 712 TGATACATCGAGATATTAAGC 732
|||||||||||||||||||||
Sbjct 133 TGATACATCGAGATATTAAGC 153
Score = 99.0 bits (53), Expect = 1e-19
Identities = 72/80 (90%), Gaps = 5/80 (6%)
Strand=Plus/Plus
Query 840 GATGATAAGGCGTGCACTTTTGTCGGGACGGCTGCATATGTTCCTCCTGAAGTTCTAAAC 899
|||||||||||||||||||||||||||||||| |||||| |||||| | ||||||||
Sbjct 237 GATGATAAGGCGTGCACTTTTGTCGGGACGGCGGCATATTTTCCTC--G---TTCTAAAC 291
Query 900 TCCTCTCCAGCAACGTTCGG 919
|||||||||||||| |||||
Sbjct 292 TCCTCTCCAGCAACTTTCGG 311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73476082605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5