BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G10550.1 Length=2904 Score E Sequences producing significant alignments: (Bits) Value Ahg317855 jgi|Araly1|317855|fgenesh1_pm.C_scaffold_3000871 2420 0.0 Ahg487236 jgi|Araly1|487236|fgenesh2_kg.6__370__AT5G04540.1 2250 0.0 Ahg343046 jgi|Araly1|343046|fgenesh1_pg.C_scaffold_3002809 719 0.0 > Ahg317855 jgi|Araly1|317855|fgenesh1_pm.C_scaffold_3000871 Length=2487 Score = 2420 bits (1310), Expect = 0.0 Identities = 1418/1469 (97%), Gaps = 12/1469 (1%) Strand=Plus/Plus Query 137 AAGATGGATGGTACCGGTAGTTGGGACACGCTTGAATGGACCAAACTCGATTCAAC-T-- 193 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 97 AAGATGGATGGTACCGGTAGTTGGGACACGCTTGAATGGACCAAACTCGATTCAGCTTCA 156 Query 194 ---TCA--G---GG-TCAGGTTCTTTCTCGAATTTGAGTTGCTTGCTGGAATCGGAGAGG 244 ||| | || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 157 GGGTCAGGGTCAGGTTCAGGTTCTTTCTCGAATTTGAGTTGCTTGCTGGAATCGGAGAGG 216 Query 245 GTCATCGTCGAGGGTTATGGAGTTGTGCTTATTAACACCGATGAGGCAGGAACCCTTTTG 304 |||||||||||||||||||||||||| |||||||||||||| || |||||||| || ||| Sbjct 217 GTCATCGTCGAGGGTTATGGAGTTGTTCTTATTAACACCGACGAAGCAGGAACTCTATTG 276 Query 305 GTGACTAATTTCCGTATTCtttttttGAGTGAAGGAACCAGAAAAGTCATTCCACTTGGT 364 ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 277 GTGACAAATTTCCGTATTCTTTTTCTGAGTGAAGGAACCAGAAAAGTCATTCCACTTGGA 336 Query 365 ACAATTCCATTGGCAACTATTGAGAAGTTTAACAAAATGGTTCTGAAAGTTCAATCAAGT 424 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 337 ACCATTCCATTGGCAACTATTGAGAAGTTTAACAAAATGGTGCTGAAAGTTCAATCAAGC 396 Query 425 CCCCGTCAGTCTGACAAGATTCCACCAAGACGTCTTTTACAGGTCACTGGCAAAGACATG 484 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 397 CCCCGTCAGTCTGACAAGAATCCACCAAGACGTCTTTTACAGGTCACTGGCAAAGACATG 456 Query 485 AGGATAATTGTTTATGGCTTTCGTCCTCGCACCAAGCAGAGACGTAATGTGTTTGATGCA 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 457 AGGATAATTGTTTATGGCTTTCGTCCTCGCACCAAGCAGAGACGTAATGTGTTTGATGCA 516 Query 545 TTACTGAAGTGTACCAAGCCAGAGAGAGTTTGGGATCTATATACTTTTGCATGCGGGCCT 604 ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||| Sbjct 517 TTACTGAAGTGTAGCAAGCCAGAGAGAGTATGGGATCTATATACGTTTGCATGCGGTCCT 576 Query 605 TCCAAATTTGGTAACGCAAACCCAAAGGAAAGATTGCTTAATGAATATTTCCGTCTTCTC 664 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 577 TCCAAATTTGGTAACACAAACCCAAAGGAAAGATTGCTTAATGAATATTTCCGTCTTCTC 636 Query 665 GGAAAAAGTTCAATACGAGCATCAATGGATATGATTGAAGATGGTGCGTTCACATTGTCC 724 |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 637 GGAAGAAGTTCAATACGAGCATCAATGGATATGATTGAAGATGGTTCGTTCACATTGTCC 696 Query 725 AATGAGCTGTGGCGAATAAGCGACTTGAACTCCAATTACAACTTGTGTCAGACTTATCCA 784 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 697 AACGAGCTGTGGCGGATAAGCGACTTGAACTCCAATTACAACTTGTGTCAGACTTATCCA 756 Query 785 TTTGCTTTTATGATTCCAAAATCCATAAGTGATGCAGAGCTGCTCCAGGCGTGTTCTTTC 844 |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 757 TTTGCTTTTATGGTTCCAAAATCCATAAGTGATGAAGAGCTGCTCCAGGCGTGTTCTTTC 816 Query 845 CGGGCAAGATGTCGCTTACCTGTGATCACATGGTGTCAGCCAGGAAGTGGAGCTGTGATT 904 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 817 CGAGCAAGATGTCGCTTACCTGTGATCACGTGGTGTCAGCCAGGAAGTGGAGCTGTGATT 876 Query 905 GCACGCTCATCACAACCTTTAGTGGGTCTTATGATGAATATGAGGAGTAATCTTGATGAA 964 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 877 GCACGCTCATCACAACCTTTAGTGGGTCTTATGATGAATATGAGGAGTAATCTTGATGAA 936 Query 965 AAACTAGTTGCTGCATTCTGCTCTCAGTTACCTGGTGCTAAGGGAGAACGAAGGAAGCTT 1024 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 937 AAACTTGTTGCTGCATTCTGCTCTCAATTACCTGGTGCTAAGGGAGAACGAAGGAAGCTT 996 Query 1025 TATATTGCTGATGCAAGACCTAGGAAAAATGCATTAGCCAATGGAGCAATGGGAGGTGGC 1084 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 997 TATATTGCCGATGCAAGACCTAGGAAGAATGCATTAGCCAATGGAGCAATGGGAGGTGGC 1056 Query 1085 TCAGAATCATCTTCCAATTATTTTCAATCTGAAATTGTTTTCTTTGGCATAGACAACATA 1144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1057 TCAGAATCATCTTCCAATTATTTTCAATCTGAAATTGTTTTCTTTGGCATAGACAACATA 1116 Query 1145 CATGCAATGAGGGAGAGCTTTTCCCGCGTTAGAGATTATTTAGATATGCACGGTACAACA 1204 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1117 CATGCAATGAGGGAGAGCTTTTCCCGCGTTAGAGATTATTTAGATATGCATGGTACAACA 1176 Query 1205 TCATCCGATGGGAGATCATCGTTCTTGAGACACGGTGGTTGGACCTGGGGAGGAGGTAAT 1264 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1177 TCATCTGATGGGAGATCATCGTTCTTGAGACACGGTGGTTGGACCTGGGGAGGAGGTAAT 1236 Query 1265 CTTAGTAGTATGTCTGCTTCAGTATCTTTACTTGGAGATAGTGGCTGGTTGATACACATC 1324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1237 CTTAGTAGTATGTCTGCTTCAGTATCTTTACTTGGAGATAGTGGCTGGTTGATACACATC 1296 Query 1325 CAGAGCGTCTTAGCTGGTGCAGCATGGATTGCTGCACGTGTTGCTATGGAGTCGGCATCA 1384 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1297 CAGAGCGTCTTAGCTGGTGCAGCATGGATAGCTGCACGTGTTGCTATGGAGTCGGCATCA 1356 Query 1385 GTTCTTGTGCACTGCAGTGATGGATGGGACAGAACAACTCAGCTTGTTTCTCTTGCGTGC 1444 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1357 GTTCTTGTGCACTGCAGTGATGGGTGGGACAGAACAACTCAGCTTGTTTCTCTTGCATGC 1416 Query 1445 TTATTGCTTGATCCATACTACAGAACTTTTGCTGGGTTTCAGGCTCTTGTCGAAAAGGAT 1504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1417 TTATTGCTTGATCCATACTACAGAACTTTTGCTGGGTTTCAGGCTCTTGTCGAAAAGGAT 1476 Query 1505 TGGCTTGCTTTTGGTCACCCATTTTCGGATCGTGTAGGAATGCCTAACATATCAGGATCT 1564 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1477 TGGCTTGCTTTTGGGCACCCATTTTCGGATCGTGTAGGAATGCCTAACATATCAGGATCT 1536 Query 1565 GGTAATTTTGACTTTCCTAGGCAGTCTTC 1593 |||||||||||||| || ||||| ||||| Sbjct 1537 GGTAATTTTGACTTACCAAGGCACTCTTC 1565 Score = 1589 bits (860), Expect = 0.0 Identities = 908/931 (98%), Gaps = 3/931 (0%) Strand=Plus/Plus Query 1663 CTCTTCCCATGGGCATAACAATTATTCACCTATATTTATGCAGTGGATTGATAGCGTTTC 1722 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1560 CTCTTCCCATGGACATAACAATTATTCACCTATATTTATGCAGTGGATTGATAGCGTTTC 1619 Query 1723 ACAGCTAATGCGGATGTATCCTTGTGCTTTTGAGTTTTCTCCGACTTTCCTGGTAGATTT 1782 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1620 ACAGCTAATGCGGATGTATCCTTGTGCTTTTGAGTTTTCTCCGACTTTCCTGGTAGATTT 1679 Query 1783 TATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGCAACAGTGAAAAAGAGAG 1842 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1680 TATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGCAACAGTGAAAAAGAGAG 1739 Query 1843 GGAACAATGTGGGATTGCTGATGCCTGTGGATGCCTATGGGCGTACTTGACTGATCTGCG 1902 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1740 GGAACAATGTGGGATTGCTGATGCCTGTGGATGCCTATGGGCGTACTTGACTGATCTGCG 1799 Query 1903 TTCATTTAGTGCAACTTCTCATGTCCATTGTAACCCATTCTATGATCCTTTGAAGTATGA 1962 |||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||| Sbjct 1800 TTCATTTAGTGCAACT-C--ATGTCCATTGTAACCCATTCTATGATCCTTTGAAATATGA 1856 Query 1963 CGGCCCATTACTACCTCCTGCAGCATCTCTAGCTCCTACCCTTTGGCCCCAGTTCCATCT 2022 |||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1857 CGGCCCATTACTCCCACCAGCAGCATCTCTAGCTCCTACCCTTTGGCCCCAGTTCCATCT 1916 Query 2023 CCGGTGGGCTTGTCCTGAGGAAGCTAAAGCTGCAGATATTGGAGTCCAATGTAGAGCCAT 2082 |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1917 GCGGTGGGCTTGTCCCGAGGAAGCTAAAGCTGCAGATATCGGGGTCCAATGTAGAGCCAT 1976 Query 2083 GACAGTGAAATATTCCGAAATGCAAAAGGAGAAAGAAGCAGCAGAAAGAAGAGTGGACGA 2142 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1977 GACAGTGAAATATTCTGAAATGCAAAAGGAGAAAGAAGCAGCAGAAAGAAGAGTGGACGA 2036 Query 2143 GATATCTTTCGCAATGGAGTCATTAAGTGCAGAGTTGCTAAGAGAAAGGCATTTGAGTTG 2202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2037 GATATCTTTCGCAATGGAGTCATTAAGTGCAGAGTTGCTAAGAGAAAGGCATTTGAGTTG 2096 Query 2203 GGTAGCTAGAGAATCAGCAAATCGAGCTACCAAGGAATATGCAGCTTTAACCCGAGCAGT 2262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2097 GGTAGCTAGAGAATCAGCAAATCGAGCTACCAAGGAATATGCAGCTTTAACCCGAGCAGT 2156 Query 2263 ACAATCACTCGGGTGCAAGATTAACTTCACCACATCTGATGTCGAAGATGACCCAAGGAG 2322 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2157 ACAATCACTCGGGTGCAAGATTAACTTCACCACGTCTGATGTCGAAGATGACCCAAGGAG 2216 Query 2323 CTCTCTGGAGAATAACCCTAGGAGACGAAACAGACACGGGAACAACTCAGATGTTTCTGT 2382 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2217 TTCTCTGGAGAATAACCCTAGGAGACGAAACAGACACGGGAACAATTCAGATGTTTCTGT 2276 Query 2383 ATCAATCTCACTAATGCCTGAAGAAAATACATCTGGAAACCCGAAAGGGCGAGTTTGTGA 2442 |||||||||||| ||| ||||||||||||||||||| ||||||| ||| ||||||||||| Sbjct 2277 ATCAATCTCACTGATGTCTGAAGAAAATACATCTGGGAACCCGATAGGACGAGTTTGTGA 2336 Query 2443 AGCGTTGTGTCCATTGCGTACAAGAGAAGGAGTATGTCGATGGCCTGAAGTAGGATGTGC 2502 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2337 AGCGTTGTGTCCATTGCGTACAAGAGAAGGAGTATGTCGATGGCCTGAAGTTGGATGTGC 2396 Query 2503 TCATGTCGGAAGTCAGTTTGTCGGGTTAAAAGCAAATTTTGATGCGTTTGATCGGCTTGC 2562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2397 TCATGTCGGAAGTCAGTTTGTCGGGTTAAAAGCAAATTTTGATGCGTTTGATCGGCTTGC 2456 Query 2563 CATCTACGATAGCTATTTCCAACCTAAATGA 2593 ||||||||||||||||||||||||| ||||| Sbjct 2457 CATCTACGATAGCTATTTCCAACCTGAATGA 2487 Score = 99.0 bits (53), Expect = 2e-19 Identities = 67/73 (92%), Gaps = 3/73 (4%) Strand=Plus/Plus Query 33 GAAGCCTCGTCACCGTCTCTTTCTCTCCCCCCTTTTTCATGACGCCGCCGAGACCACCGT 92 |||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||| Sbjct 30 GAAGCCTCGTCACCGTCTCTTTATCTCCC---TTTCTCATGACGCCGCCGAGACCACCGT 86 Query 93 CTGGGCGAGTAAG 105 ||||||||| ||| Sbjct 87 CTGGGCGAGCAAG 99 > Ahg487236 jgi|Araly1|487236|fgenesh2_kg.6__370__AT5G04540.1 Length=3014 Score = 2250 bits (1218), Expect = 0.0 Identities = 1975/2331 (85%), Gaps = 89/2331 (4%) Strand=Plus/Plus Query 3 TTTG-CTCCGTTGATCGGCAGGTGATCA-CCAGAAGCCTCG--TCACCGTCTCT-T--TC 55 |||| | ||||||| |||||||||| | || ||| || || ||||||||||| | || Sbjct 57 TTTGCCACCGTTGAGCGGCAGGTGA--AGCC-GAA-CC-CGAATCACCGTCTCTCTCATC 111 Query 56 TCTCCCCCCTTTTTC-ATGACGCCGCCGAGACCAC-CGTCTGGGCGAGT-AAGGTCGCTG 112 |||| | || ||||| |||||| ||| |||||| | | || ||| || | | | |||||| Sbjct 112 TCTCTCTCC-TTTTCAATGACGGCGCTGAGACCTCTC-TCCGGGAGA-TCACGATCGCTG 168 Query 113 CGTGATTATTCTTCGGAATCAGAAAAGATGGATGGTACCGGTAGTTGGGACACGCTTGAA 172 | || | ||| |||| || |||||||| |||||||| || |||||| |||||| Sbjct 169 C--GA-TGTTCGTCGG----AG--AAGATGGAAGGTACCGGAAGCTGGGACGTACTTGAA 219 Query 173 TGGACCAAACTCGATTCAACTTCAGGGTCAGGTTC-TTTCTCGAATTT-GAGTTGCTTGC 230 ||||| |||||||||||| |||| ||||||| || | | |||||||| || |||||||| Sbjct 220 TGGACTAAACTCGATTCAGCTTCTTGGTCAGGCTCGTAT-TCGAATTTGGA-TTGCTTGC 277 Query 231 TGGAATCGGAGAGGGTCATCGTCGAGGGTTATGGAGTTGTGCTTATTAACACCGATGAGG 290 ||||||| |||||| ||||| |||||| || ||||||| | || |||||||||||||||| Sbjct 278 TGGAATCTGAGAGGATCATCTTCGAGGCTTGTGGAGTTATTCTCATTAACACCGATGAGG 337 Query 291 CAGGAACCCTTTTGGTGACTAATTTCCGTATTCtttttttGAGTGAAGGAACCAGAAAAG 350 |||| ||||| || || | |||||||||||||| |||||||||||||||||||| |||| Sbjct 338 CAGGGACCCTCTTATTGTCAAATTTCCGTATTCTGTTTTTGAGTGAAGGAACCAG-AAAG 396 Query 351 -TCATTCCACTTGGTACAATTCCATTGGCAACTATTGAGAAGTTTAACAAAATGGTTCTG 409 | ||||||||||||||||||||||| | | |||| ||||||||||||||| ||| ||| Sbjct 397 CTTATTCCACTTGGTACAATTCCATTTGTAGCTATCGAGAAGTTTAACAAACTGGCGCTG 456 Query 410 AAAGTTCAATCAAGTC-CCCGTCA-GTCTGACAAGATTCCACCAAGACGTCTTTTACAGG 467 ||||||||| ||| | ||| | || ||| | |||| | ||| |||||||||| Sbjct 457 AAAGTTCAAGCAA-ACAAATATCACAAC-AACGAGAATGCACCGACACGACTTTTACAGG 514 Query 468 TCACTGGCAAAGACATGAGGATAATTGTTTATGGCTTTCGTCCTCGCACCAAGCAGAGAC 527 ||||||| ||||||||||||||| |||| || || ||||| ||| | ||||||||||||| Sbjct 515 TCACTGGAAAAGACATGAGGATAGTTGTCTACGGTTTTCGACCTGGTACCAAGCAGAGAC 574 Query 528 GTAATGT-GTTTGATGCATTACTGAAGTGTACCAAGCCAGAGAGAGTTTGGGATCTATAT 586 || ||| | ||||||| || ||| ||||| ||| ||||||||||| |||||||| ||| Sbjct 575 GTTCTGTAG-TTGATGCGCTATTGAGGTGTAACAAACCAGAGAGAGTATGGGATCTGTAT 633 Query 587 ACTTTTGCATGCGGGCCTTCCAAATTTGGTAACGCAAACCCAAAGGAAAGATTGCTTAAT 646 |||| |||| |||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct 634 GCTTTCACATGTGGGCCTTCCAAATTCGGTAACACAAACCCAAAGGAAAGATTGCTTAAT 693 Query 647 GAATATTTCCGTCTTCTCGGAAAAAGTTCA-ATACGAGCATCAATGGATATGATTGAAGA 705 |||||||| || ||||| |||||||||||| | |||||| |||||| ||||||||||||| Sbjct 694 GAATATTTTCGGCTTCTTGGAAAAAGTTCACA-ACGAGCGTCAATGAATATGATTGAAGA 752 Query 706 TGGTGCGTTCACAT-TGTCCAATGAGCTGTGGCGAATAAGC-GACTTGAACTCCAATTAC 763 || | ||||| | |||||||||| || ||||| || | | |||||||||| ||||| Sbjct 753 CGGAACATTCAC-TCTGTCCAATGACCTTTGGCGTATTA-CTAACTTGAACTCAAATTAT 810 Query 764 AACTTGTGTCAGACTTATCCATTTGCTTTTATGATTCCAAAATCCATAAGTGATGCAGAG 823 |||||||||||| |||||| |||||||| ||| ||||||||||||| ||||||| |||| Sbjct 811 GACTTGTGTCAGAGTTATCCGTTTGCTTTGATGGTTCCAAAATCCATTAGTGATGAAGAG 870 Query 824 CTGCTCCAGGCGTGTTCTTTCCGGGCAAGATGTCGCTTACCTGTGATCACATGGTGTCAG 883 ||| ||||| ||| | |||||||||||||||||||||||||||||||| | |||||||| Sbjct 871 CTGATCCAGACGTCTACTTTCCGGGCAAGATGTCGCTTACCTGTGATCTCGTGGTGTCAT 930 Query 884 CCAGGAAGTGGAGCTGTGATTGCACGCTCATCACAACCTTTAGTGGGTCTTATGATGAAT 943 ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| Sbjct 931 CCAGGAAGTGGAGCTGTGATTGCTCGCTCATCACAACCTTTAGTTGGTCTGATGATGAAC 990 Query 944 ATGAGGAGTAATCT-TGATGAAAAACTAGTTGCTGCATTCTGCTCTCAGTTACCTGGTGC 1002 ||||||||| | || |||||| ||||| || || |||||||| |||| ||| ||||| | Sbjct 991 ATGAGGAGT-ACCTCTGATGAGAAACTTGTCACTTCATTCTGCACTCAATTAGCTGGT-C 1048 Query 1003 -TAAGGGAGAACGAAGGAAGCTTTATATTGCT-GATGCAAGACCTAGGAAAAATGCATTA 1060 ||||||| |||||||||||||||||| | | ||||||||||||||||||||||||||| Sbjct 1049 ATAAGGGATCACGAAGGAAGCTTTATATCG-TAGATGCAAGACCTAGGAAAAATGCATTA 1107 Query 1061 GCCAATGGAGCAATGGGAGGTGGCTCAGAATCATCTTCCAATTATTTTCAATCTGAAATT 1120 || |||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||| Sbjct 1108 GCAAATGGAGCAAAGGGAGGAGGCTCAGAATCATCTTCAAATTATTTGCAATCTGAAATT 1167 Query 1121 GTTTTCTTT-GGCATAGACAACATACATGCAATGAGGGAGAGCTTTTCCCGCGTTAGAGA 1179 ||||| ||| || ||||||||||||||||||||||| ||||| ||||||||| |||| || Sbjct 1168 GTTTT-TTTGGGGATAGACAACATACATGCAATGAGAGAGAGTTTTTCCCGCCTTAGGGA 1226 Query 1180 TTATTTAGATATGCACGGTACAACATCATCCGATGGGA-GATCATCGTTCTTGAGACACG 1238 ||||||||||||||| |||||||||||||||||||||| | ||||| |||||||| || | Sbjct 1227 TTATTTAGATATGCATGGTACAACATCATCCGATGGGACG-TCATCATTCTTGAGGCATG 1285 Query 1239 GTGGTTGGACCTGGGGAGGAGGTAATCTTAGTAGTATGTCTGCTTCAGTATCTTTACTTG 1298 |||| ||||| ||||| ||||||||||| ||||||||||| ||||||||||| || |||| Sbjct 1286 GTGGCTGGACGTGGGGTGGAGGTAATCTCAGTAGTATGTCGGCTTCAGTATCCTTGCTTG 1345 Query 1299 GAGATAGTGGCTGGTTGA-TACACATCCAGAGCGTCTTAGCTGGTGCAGCATGGATTGCT 1357 |||||||||| ||||||| | |||||||||||| |||||||||||| ||||||||||||| Sbjct 1346 GAGATAGTGGGTGGTTGAGT-CACATCCAGAGCATCTTAGCTGGTGTAGCATGGATTGCT 1404 Query 1358 GCACGTGTTGCTATGGAGTCGGCATCAGTTCTTGTGCACTGCAGTGATGGATGGGACAGA 1417 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1405 GCACGTGTTGCTATGGAGTCGGCATCAGTTCTCGTGCACTGCAGTGATGGATGGGACAGA 1464 Query 1418 ACAACTCAGCTTGTTTCTCTTGCGTGCTTATTGCTTGATCCATACTACAGAAC-TTTTGC 1476 ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 1465 ACAACTCAGCTGGTTTCTCTTGCATGCTTATTGCTTGATCCATACTACAGAACATTTT-C 1523 Query 1477 TGGGTTTCAGGCTCTTGTCGAAAAGGATTGGCTT-GCTTTTGGTCACCCATTTTCGGATC 1535 ||||||||||||||||||||||||||||||| || || |||||||||||||||||||||| Sbjct 1524 TGGGTTTCAGGCTCTTGTCGAAAAGGATTGG-TTAGCATTTGGTCACCCATTTTCGGATC 1582 Query 1536 GTGTAGGAATGCCTAACATATCAGGATCTGGTAATTTTGACTTTCCTAGGCAGTCTTCGT 1595 | || |||||||||||| | || | ||||||||||||||| || || | |||||||| | Sbjct 1583 GAGTGGGAATGCCTAACGTGTCTGAATCTGGTAATTTTGAATTACCAATTCAGTCTTCTT 1642 Query 1596 CTGCTGGAAGTTTCCCTTCATCTCCTGTGCGTCAGTCTTCAGGATCAGCAGCCT-CACAA 1654 ||||| ||||||||||||||||||| ||||| || ||| ||||||||||||| | | ||| Sbjct 1643 CTGCTCGAAGTTTCCCTTCATCTCCAGTGCGGCAATCTCCAGGATCAGCAGC-TGCTCAA 1701 Query 1655 TCTTCAAGCTCTTCCCATGGGCAT-AACAATTATTCACCTATATTTATGCAGTGGATTGA 1713 ||||| |||||||| |||||| | ||||| ||||| ||||||||| |||||||| || | Sbjct 1702 TCTTCTAGCTCTTCATATGGGC-TGAACAACTATTCTCCTATATTTTTGCAGTGGCTTTA 1760 Query 1714 TAGCGTTTCACAGCTAATGCGGATGTATCCTTGTGCTTTTGAGTTTTCTCCGACTTTCCT 1773 | |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 1761 TTGCGTTTCACAGCTAATGCGGATGTATCCTTCTGCTTTCGAGTTTTCTCCGACTTTCCT 1820 Query 1774 GGTAGATTTTATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGCAACAGTGA 1833 ||||||||| | ||| |||||||||||| |||||||||||||||| || || || ||||| Sbjct 1821 GGTAGATTTCACGGACTGCTTGCTTTCAGGTCGTTTTGGGAACTTTTTGTGTAATAGTGA 1880 Query 1834 AAAAGAGAGGGAACAATGTGGGATTGCTGATGCCTGTGGATGCCTATGGGCGTACTTGAC 1893 |||||||||| | |||||||||||| |||| ||||||||||||| ||||| |||||| | Sbjct 1881 AAAAGAGAGGCAGCAATGTGGGATTTCTGAAACCTGTGGATGCCTTTGGGCCTACTTGGC 1940 Query 1894 TGATCTGCGTTCATTTAG-TGCAACTTCTCATGTCCATTGTAACCCATTCTATGATCCTT 1952 ||| ||||||| || | || ||||||||||||||||||||| ||||| |||||||||| Sbjct 1941 CGATTTGCGTTC-TTCCGGTGGAACTTCTCATGTCCATTGTAATCCATTTTATGATCCTT 1999 Query 1953 TGAAG-TATGACGGCCCATTACTACCTCCTGCAGCATCTCTAGCTCCTACCCTTTGGCCC 2011 ||| ||||| ||||||||| |||||||||||||| ||||||| || || || |||||| Sbjct 2000 C-AAGATATGATGGCCCATTATTACCTCCTGCAGCAGCTCTAGCCCCGACTCTCTGGCCC 2058 Query 2012 CAGTTCCATCTCCGGTGGGCTTGTCCTGAGGAAGCTAAA-GCTGCAGATATTGGAGT-CC 2069 |||||||||||||||||||| || |||| ||| || || || |||| | | || || Sbjct 2059 CAGTTCCATCTCCGGTGGGCCTGCCCTGTGGA-GCCGAACGCCACAGAAACCG-AGGACC 2116 Query 2070 AATGTAGAGCCATGACAG-TGAAATATTCCGAAATGCAA-AAGGAGAAAGAAGCAGCAGA 2127 |||||||||||||||| | | || ||||| |||||| || ||||||||||||| |||||| Sbjct 2117 AATGTAGAGCCATGACTGCT-AAGTATTCAGAAATG-AAGAAGGAGAAAGAAGAAGCAGA 2174 Query 2128 AAG-AAGAGTGGACGAGATATCTT-TCGCAATGGAGTCATTAAGTGCAGAGTTGCT-AA- 2183 ||| ||| || |||||| |||||| | ||| |||| ||||| || | |||||| || || Sbjct 2175 AAGGAAG-GTAGACGAGTTATCTTCT-GCAGTGGAATCATTGAGCGAAGAGTTACTGAAC 2232 Query 2184 GAGAAAGGCATTTGAGTTGGGTAGCTAGAGAATCAGCAAATCGAGCTACCAAGGAATATG 2243 |||| || || | || | |||||||||||||||||| ||||||| || || || Sbjct 2233 GAGAGAG--ATATAAGCCATGCAGCTAGAGAATCAGCAAAGAGAGCTACAAAAGAGCGTG 2290 Query 2244 CAG-CTTTAACCCGAGCAGTACAATCACTCGGGTGCAA-GATTAACTTCAC 2292 ||| | | | | ||||| || || |||||||| ||||| | |||| ||||| Sbjct 2291 CAGTCAT-ATCACGAGCTGTGCAGTCACTCGGCTGCAAAG-TTAAATTCAC 2339 > Ahg343046 jgi|Araly1|343046|fgenesh1_pg.C_scaffold_3002809 Length=1065 Score = 719 bits (389), Expect = 0.0 Identities = 445/469 (95%), Gaps = 15/469 (3%) Strand=Plus/Plus Query 1018 GAAGCTTTATATTGCTGATGCAAGACCTAGGAAAAATGCATTAGCCAATGGAGCAATGGG 1077 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 24 GAAGCTTTATATTGCCGATGCAAGACCTAGGAAGAATGCATTAGCCAATGGAGCAATGGG 83 Query 1078 AGGTGGCTCAGAATCATCTTCCAATTATTTTCAATCTGAAATTGTTTTCTTTGGCATAGA 1137 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 84 AGGTGGCTCAGAATCACCTTCCAATTATTTTCAATCTCAAATTGTTTTCTTTGGCATAGA 143 Query 1138 CAACATACATGCAATGAGGGAGAGCTTTTCCCGCGTTAGAGATTATTTAGATATGCACGG 1197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 144 CAACATACATGCAATGAGGGAGAGCTTTTCCCGCGTTAGAGATTATTTAGATATGCACGG 203 Query 1198 TACAACATCATCCGATGGGAGATCATCGTTCTTGAGACACGGTGGTTGGACCTGGGGAGG 1257 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 204 TACAACATCATCTGATGGGAGATCATCGTTCTTGAGACACGGTGGTTGGACCTGGGGAGG 263 Query 1258 AGGTAATCTTAGTAGTATGTCTGCTTCAGTATCTTTACTTGGAGATAGTGGCTGGTTGAT 1317 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 264 AGGTAATCTTAGTAGTATGTCTGCTTCAGTGTCTTTACTTGGAGATAGTGGCTGGTTGAT 323 Query 1318 ACACATCCAGAGCGTCTTAGCTGGTGCAGCATGGATTGCTGCACGTGTTGCTATGGAGTC 1377 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 324 ACACATCCAGAGCGTCTTAGCTGGTGCAGCATGGATAGCTGCACGTGTTGCTATGGAGTC 383 Query 1378 GGCATCAGTTCTTGTGCACTGCAGTGATGGATGGGACAGAACAACTCAGCTTGTTTCTCT 1437 |||||||||||||||||||||||| | | || | | ||||||||||||||| Sbjct 384 GGCATCAGTTCTTGTGCACTGCAG--A---A-----CA-A-C---TCAGCTTGTTTCTCT 428 Query 1438 TGCGTGCTTATTGCTTGATCCATACTACAGAACTTTTGCTGGGTTTCAG 1486 ||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 429 TGCATGCTTCTTGCTTGATCCATACTACAGAACTTTTGCTGGGTTTCAG 477 Score = 381 bits (206), Expect = 2e-104 Identities = 223/231 (97%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 1982 GCAGCATCTCTAGCTCCTACCCTTTGGCCCCAGTTCCATCTCCGGTGGGCTTGTCCTGAG 2041 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 836 GCAGCATCTCTAGCTCCTACCCTTTGGCCCCAGTTCCATCTGCGGTGGGCTTGTCCCGAG 895 Query 2042 GAAGCTAAAGCTGCAGATATTGGAGTCCAATGTAGAGCCATGACAGTGAAATATTCCGAA 2101 ||| |||||||||||||||| || |||||||||||||||||||||||||||||||| ||| Sbjct 896 GAA-CTAAAGCTGCAGATATCGGGGTCCAATGTAGAGCCATGACAGTGAAATATTCTGAA 954 Query 2102 ATGCAAAAGGAGAAAGAAGCAGCAGAAAGAAGAGTGGACGAGATATCTTTCGCAA-TGGA 2160 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 955 ATGCAAAAGGAGAAAGAAGTAGCAGAAAGAAGAGTGGACGAGATATCTTTCGCAATTGGA 1014 Query 2161 GTCATTAAGTGCAGAGTTGCTAAGAGAAAGGCATTTGAGTTGGGTAGCTAG 2211 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1015 GTCATTAAGTGCAGAGTTGCTAAGAGAAAGGCATTTGAGTTGGGTAGCTAG 1065 Score = 220 bits (119), Expect = 4e-56 Identities = 123/125 (98%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1706 TGGATTGATAGCGTTTCACAGCTAATGCGGATGTATCCTTGTGCTTTTGAGTTTTCTCCG 1765 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 712 TGGATTGATAGCGTTTCACAGCTAATGCGGATGTATCCTTGTGCTTTTGAGTTCTCTCCG 771 Query 1766 ACTTTCCTGGTAGATTTTATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGC 1825 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 772 ACTTTCCTGGTAGATTTTATGGATTGCTTGCTTTCTTGTCGTTTTGGGAACTTCTTATGC 831 Query 1826 AACAG 1830 ||||| Sbjct 832 AACAG 836 Score = 196 bits (106), Expect = 6e-49 Identities = 116/121 (96%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 1501 GGATTGGCTTGCTTTTGGTCACCCATTTTCGGATCGTGTAGGAATGCCTAACATATCAGG 1560 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 555 GGATTGGCTTGCTTTTGGGCACCCATTTTCGGATCGTGTAGGAATGCCTAACATATCAGG 614 Query 1561 ATCTGGTAATTTTGACTTTCCTAGGCAGTCTTCGTCTGCTGGAAGTTTCCCTTCATCTCC 1620 |||||||||| ||||||| || ||||||||||| |||||||||||||||||||||||||| Sbjct 615 ATCTGGTAATATTGACTTACCAAGGCAGTCTTCTTCTGCTGGAAGTTTCCCTTCATCTCC 674 Query 1621 T 1621 | Sbjct 675 T 675 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 109623725110 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5