BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10550.1
Length=2904
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317855 jgi|Araly1|317855|fgenesh1_pm.C_scaffold_3000871 2420 0.0
Ahg487236 jgi|Araly1|487236|fgenesh2_kg.6__370__AT5G04540.1 2250 0.0
Ahg343046 jgi|Araly1|343046|fgenesh1_pg.C_scaffold_3002809 719 0.0
> Ahg317855 jgi|Araly1|317855|fgenesh1_pm.C_scaffold_3000871
Length=2487
Score = 2420 bits (1310), Expect = 0.0
Identities = 1418/1469 (97%), Gaps = 12/1469 (1%)
Strand=Plus/Plus
Query 137 AAGATGGATGGTACCGGTAGTTGGGACACGCTTGAATGGACCAAACTCGATTCAAC-T-- 193
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 97 AAGATGGATGGTACCGGTAGTTGGGACACGCTTGAATGGACCAAACTCGATTCAGCTTCA 156
Query 194 ---TCA--G---GG-TCAGGTTCTTTCTCGAATTTGAGTTGCTTGCTGGAATCGGAGAGG 244
||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 GGGTCAGGGTCAGGTTCAGGTTCTTTCTCGAATTTGAGTTGCTTGCTGGAATCGGAGAGG 216
Query 245 GTCATCGTCGAGGGTTATGGAGTTGTGCTTATTAACACCGATGAGGCAGGAACCCTTTTG 304
|||||||||||||||||||||||||| |||||||||||||| || |||||||| || |||
Sbjct 217 GTCATCGTCGAGGGTTATGGAGTTGTTCTTATTAACACCGACGAAGCAGGAACTCTATTG 276
Query 305 GTGACTAATTTCCGTATTCtttttttGAGTGAAGGAACCAGAAAAGTCATTCCACTTGGT 364
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 277 GTGACAAATTTCCGTATTCTTTTTCTGAGTGAAGGAACCAGAAAAGTCATTCCACTTGGA 336
Query 365 ACAATTCCATTGGCAACTATTGAGAAGTTTAACAAAATGGTTCTGAAAGTTCAATCAAGT 424
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 337 ACCATTCCATTGGCAACTATTGAGAAGTTTAACAAAATGGTGCTGAAAGTTCAATCAAGC 396
Query 425 CCCCGTCAGTCTGACAAGATTCCACCAAGACGTCTTTTACAGGTCACTGGCAAAGACATG 484
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 397 CCCCGTCAGTCTGACAAGAATCCACCAAGACGTCTTTTACAGGTCACTGGCAAAGACATG 456
Query 485 AGGATAATTGTTTATGGCTTTCGTCCTCGCACCAAGCAGAGACGTAATGTGTTTGATGCA 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 AGGATAATTGTTTATGGCTTTCGTCCTCGCACCAAGCAGAGACGTAATGTGTTTGATGCA 516
Query 545 TTACTGAAGTGTACCAAGCCAGAGAGAGTTTGGGATCTATATACTTTTGCATGCGGGCCT 604
||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 517 TTACTGAAGTGTAGCAAGCCAGAGAGAGTATGGGATCTATATACGTTTGCATGCGGTCCT 576
Query 605 TCCAAATTTGGTAACGCAAACCCAAAGGAAAGATTGCTTAATGAATATTTCCGTCTTCTC 664
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 TCCAAATTTGGTAACACAAACCCAAAGGAAAGATTGCTTAATGAATATTTCCGTCTTCTC 636
Query 665 GGAAAAAGTTCAATACGAGCATCAATGGATATGATTGAAGATGGTGCGTTCACATTGTCC 724
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 637 GGAAGAAGTTCAATACGAGCATCAATGGATATGATTGAAGATGGTTCGTTCACATTGTCC 696
Query 725 AATGAGCTGTGGCGAATAAGCGACTTGAACTCCAATTACAACTTGTGTCAGACTTATCCA 784
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 AACGAGCTGTGGCGGATAAGCGACTTGAACTCCAATTACAACTTGTGTCAGACTTATCCA 756
Query 785 TTTGCTTTTATGATTCCAAAATCCATAAGTGATGCAGAGCTGCTCCAGGCGTGTTCTTTC 844
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 757 TTTGCTTTTATGGTTCCAAAATCCATAAGTGATGAAGAGCTGCTCCAGGCGTGTTCTTTC 816
Query 845 CGGGCAAGATGTCGCTTACCTGTGATCACATGGTGTCAGCCAGGAAGTGGAGCTGTGATT 904
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 817 CGAGCAAGATGTCGCTTACCTGTGATCACGTGGTGTCAGCCAGGAAGTGGAGCTGTGATT 876
Query 905 GCACGCTCATCACAACCTTTAGTGGGTCTTATGATGAATATGAGGAGTAATCTTGATGAA 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 GCACGCTCATCACAACCTTTAGTGGGTCTTATGATGAATATGAGGAGTAATCTTGATGAA 936
Query 965 AAACTAGTTGCTGCATTCTGCTCTCAGTTACCTGGTGCTAAGGGAGAACGAAGGAAGCTT 1024
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 937 AAACTTGTTGCTGCATTCTGCTCTCAATTACCTGGTGCTAAGGGAGAACGAAGGAAGCTT 996
Query 1025 TATATTGCTGATGCAAGACCTAGGAAAAATGCATTAGCCAATGGAGCAATGGGAGGTGGC 1084
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 997 TATATTGCCGATGCAAGACCTAGGAAGAATGCATTAGCCAATGGAGCAATGGGAGGTGGC 1056
Query 1085 TCAGAATCATCTTCCAATTATTTTCAATCTGAAATTGTTTTCTTTGGCATAGACAACATA 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 TCAGAATCATCTTCCAATTATTTTCAATCTGAAATTGTTTTCTTTGGCATAGACAACATA 1116
Query 1145 CATGCAATGAGGGAGAGCTTTTCCCGCGTTAGAGATTATTTAGATATGCACGGTACAACA 1204
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1117 CATGCAATGAGGGAGAGCTTTTCCCGCGTTAGAGATTATTTAGATATGCATGGTACAACA 1176
Query 1205 TCATCCGATGGGAGATCATCGTTCTTGAGACACGGTGGTTGGACCTGGGGAGGAGGTAAT 1264
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 TCATCTGATGGGAGATCATCGTTCTTGAGACACGGTGGTTGGACCTGGGGAGGAGGTAAT 1236
Query 1265 CTTAGTAGTATGTCTGCTTCAGTATCTTTACTTGGAGATAGTGGCTGGTTGATACACATC 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 CTTAGTAGTATGTCTGCTTCAGTATCTTTACTTGGAGATAGTGGCTGGTTGATACACATC 1296
Query 1325 CAGAGCGTCTTAGCTGGTGCAGCATGGATTGCTGCACGTGTTGCTATGGAGTCGGCATCA 1384
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1297 CAGAGCGTCTTAGCTGGTGCAGCATGGATAGCTGCACGTGTTGCTATGGAGTCGGCATCA 1356
Query 1385 GTTCTTGTGCACTGCAGTGATGGATGGGACAGAACAACTCAGCTTGTTTCTCTTGCGTGC 1444
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1357 GTTCTTGTGCACTGCAGTGATGGGTGGGACAGAACAACTCAGCTTGTTTCTCTTGCATGC 1416
Query 1445 TTATTGCTTGATCCATACTACAGAACTTTTGCTGGGTTTCAGGCTCTTGTCGAAAAGGAT 1504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 TTATTGCTTGATCCATACTACAGAACTTTTGCTGGGTTTCAGGCTCTTGTCGAAAAGGAT 1476
Query 1505 TGGCTTGCTTTTGGTCACCCATTTTCGGATCGTGTAGGAATGCCTAACATATCAGGATCT 1564
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 TGGCTTGCTTTTGGGCACCCATTTTCGGATCGTGTAGGAATGCCTAACATATCAGGATCT 1536
Query 1565 GGTAATTTTGACTTTCCTAGGCAGTCTTC 1593
|||||||||||||| || ||||| |||||
Sbjct 1537 GGTAATTTTGACTTACCAAGGCACTCTTC 1565
Score = 1589 bits (860), Expect = 0.0
Identities = 908/931 (98%), Gaps = 3/931 (0%)
Strand=Plus/Plus
Query 1663 CTCTTCCCATGGGCATAACAATTATTCACCTATATTTATGCAGTGGATTGATAGCGTTTC 1722
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 CTCTTCCCATGGACATAACAATTATTCACCTATATTTATGCAGTGGATTGATAGCGTTTC 1619
Query 1723 ACAGCTAATGCGGATGTATCCTTGTGCTTTTGAGTTTTCTCCGACTTTCCTGGTAGATTT 1782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 ACAGCTAATGCGGATGTATCCTTGTGCTTTTGAGTTTTCTCCGACTTTCCTGGTAGATTT 1679
Query 1783 TATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGCAACAGTGAAAAAGAGAG 1842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 TATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGCAACAGTGAAAAAGAGAG 1739
Query 1843 GGAACAATGTGGGATTGCTGATGCCTGTGGATGCCTATGGGCGTACTTGACTGATCTGCG 1902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 GGAACAATGTGGGATTGCTGATGCCTGTGGATGCCTATGGGCGTACTTGACTGATCTGCG 1799
Query 1903 TTCATTTAGTGCAACTTCTCATGTCCATTGTAACCCATTCTATGATCCTTTGAAGTATGA 1962
|||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||
Sbjct 1800 TTCATTTAGTGCAACT-C--ATGTCCATTGTAACCCATTCTATGATCCTTTGAAATATGA 1856
Query 1963 CGGCCCATTACTACCTCCTGCAGCATCTCTAGCTCCTACCCTTTGGCCCCAGTTCCATCT 2022
|||||||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 CGGCCCATTACTCCCACCAGCAGCATCTCTAGCTCCTACCCTTTGGCCCCAGTTCCATCT 1916
Query 2023 CCGGTGGGCTTGTCCTGAGGAAGCTAAAGCTGCAGATATTGGAGTCCAATGTAGAGCCAT 2082
|||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1917 GCGGTGGGCTTGTCCCGAGGAAGCTAAAGCTGCAGATATCGGGGTCCAATGTAGAGCCAT 1976
Query 2083 GACAGTGAAATATTCCGAAATGCAAAAGGAGAAAGAAGCAGCAGAAAGAAGAGTGGACGA 2142
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1977 GACAGTGAAATATTCTGAAATGCAAAAGGAGAAAGAAGCAGCAGAAAGAAGAGTGGACGA 2036
Query 2143 GATATCTTTCGCAATGGAGTCATTAAGTGCAGAGTTGCTAAGAGAAAGGCATTTGAGTTG 2202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 GATATCTTTCGCAATGGAGTCATTAAGTGCAGAGTTGCTAAGAGAAAGGCATTTGAGTTG 2096
Query 2203 GGTAGCTAGAGAATCAGCAAATCGAGCTACCAAGGAATATGCAGCTTTAACCCGAGCAGT 2262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2097 GGTAGCTAGAGAATCAGCAAATCGAGCTACCAAGGAATATGCAGCTTTAACCCGAGCAGT 2156
Query 2263 ACAATCACTCGGGTGCAAGATTAACTTCACCACATCTGATGTCGAAGATGACCCAAGGAG 2322
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2157 ACAATCACTCGGGTGCAAGATTAACTTCACCACGTCTGATGTCGAAGATGACCCAAGGAG 2216
Query 2323 CTCTCTGGAGAATAACCCTAGGAGACGAAACAGACACGGGAACAACTCAGATGTTTCTGT 2382
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2217 TTCTCTGGAGAATAACCCTAGGAGACGAAACAGACACGGGAACAATTCAGATGTTTCTGT 2276
Query 2383 ATCAATCTCACTAATGCCTGAAGAAAATACATCTGGAAACCCGAAAGGGCGAGTTTGTGA 2442
|||||||||||| ||| ||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct 2277 ATCAATCTCACTGATGTCTGAAGAAAATACATCTGGGAACCCGATAGGACGAGTTTGTGA 2336
Query 2443 AGCGTTGTGTCCATTGCGTACAAGAGAAGGAGTATGTCGATGGCCTGAAGTAGGATGTGC 2502
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2337 AGCGTTGTGTCCATTGCGTACAAGAGAAGGAGTATGTCGATGGCCTGAAGTTGGATGTGC 2396
Query 2503 TCATGTCGGAAGTCAGTTTGTCGGGTTAAAAGCAAATTTTGATGCGTTTGATCGGCTTGC 2562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2397 TCATGTCGGAAGTCAGTTTGTCGGGTTAAAAGCAAATTTTGATGCGTTTGATCGGCTTGC 2456
Query 2563 CATCTACGATAGCTATTTCCAACCTAAATGA 2593
||||||||||||||||||||||||| |||||
Sbjct 2457 CATCTACGATAGCTATTTCCAACCTGAATGA 2487
Score = 99.0 bits (53), Expect = 2e-19
Identities = 67/73 (92%), Gaps = 3/73 (4%)
Strand=Plus/Plus
Query 33 GAAGCCTCGTCACCGTCTCTTTCTCTCCCCCCTTTTTCATGACGCCGCCGAGACCACCGT 92
|||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||
Sbjct 30 GAAGCCTCGTCACCGTCTCTTTATCTCCC---TTTCTCATGACGCCGCCGAGACCACCGT 86
Query 93 CTGGGCGAGTAAG 105
||||||||| |||
Sbjct 87 CTGGGCGAGCAAG 99
> Ahg487236 jgi|Araly1|487236|fgenesh2_kg.6__370__AT5G04540.1
Length=3014
Score = 2250 bits (1218), Expect = 0.0
Identities = 1975/2331 (85%), Gaps = 89/2331 (4%)
Strand=Plus/Plus
Query 3 TTTG-CTCCGTTGATCGGCAGGTGATCA-CCAGAAGCCTCG--TCACCGTCTCT-T--TC 55
|||| | ||||||| |||||||||| | || ||| || || ||||||||||| | ||
Sbjct 57 TTTGCCACCGTTGAGCGGCAGGTGA--AGCC-GAA-CC-CGAATCACCGTCTCTCTCATC 111
Query 56 TCTCCCCCCTTTTTC-ATGACGCCGCCGAGACCAC-CGTCTGGGCGAGT-AAGGTCGCTG 112
|||| | || ||||| |||||| ||| |||||| | | || ||| || | | | ||||||
Sbjct 112 TCTCTCTCC-TTTTCAATGACGGCGCTGAGACCTCTC-TCCGGGAGA-TCACGATCGCTG 168
Query 113 CGTGATTATTCTTCGGAATCAGAAAAGATGGATGGTACCGGTAGTTGGGACACGCTTGAA 172
| || | ||| |||| || |||||||| |||||||| || |||||| ||||||
Sbjct 169 C--GA-TGTTCGTCGG----AG--AAGATGGAAGGTACCGGAAGCTGGGACGTACTTGAA 219
Query 173 TGGACCAAACTCGATTCAACTTCAGGGTCAGGTTC-TTTCTCGAATTT-GAGTTGCTTGC 230
||||| |||||||||||| |||| ||||||| || | | |||||||| || ||||||||
Sbjct 220 TGGACTAAACTCGATTCAGCTTCTTGGTCAGGCTCGTAT-TCGAATTTGGA-TTGCTTGC 277
Query 231 TGGAATCGGAGAGGGTCATCGTCGAGGGTTATGGAGTTGTGCTTATTAACACCGATGAGG 290
||||||| |||||| ||||| |||||| || ||||||| | || ||||||||||||||||
Sbjct 278 TGGAATCTGAGAGGATCATCTTCGAGGCTTGTGGAGTTATTCTCATTAACACCGATGAGG 337
Query 291 CAGGAACCCTTTTGGTGACTAATTTCCGTATTCtttttttGAGTGAAGGAACCAGAAAAG 350
|||| ||||| || || | |||||||||||||| |||||||||||||||||||| ||||
Sbjct 338 CAGGGACCCTCTTATTGTCAAATTTCCGTATTCTGTTTTTGAGTGAAGGAACCAG-AAAG 396
Query 351 -TCATTCCACTTGGTACAATTCCATTGGCAACTATTGAGAAGTTTAACAAAATGGTTCTG 409
| ||||||||||||||||||||||| | | |||| ||||||||||||||| ||| |||
Sbjct 397 CTTATTCCACTTGGTACAATTCCATTTGTAGCTATCGAGAAGTTTAACAAACTGGCGCTG 456
Query 410 AAAGTTCAATCAAGTC-CCCGTCA-GTCTGACAAGATTCCACCAAGACGTCTTTTACAGG 467
||||||||| ||| | ||| | || ||| | |||| | ||| ||||||||||
Sbjct 457 AAAGTTCAAGCAA-ACAAATATCACAAC-AACGAGAATGCACCGACACGACTTTTACAGG 514
Query 468 TCACTGGCAAAGACATGAGGATAATTGTTTATGGCTTTCGTCCTCGCACCAAGCAGAGAC 527
||||||| ||||||||||||||| |||| || || ||||| ||| | |||||||||||||
Sbjct 515 TCACTGGAAAAGACATGAGGATAGTTGTCTACGGTTTTCGACCTGGTACCAAGCAGAGAC 574
Query 528 GTAATGT-GTTTGATGCATTACTGAAGTGTACCAAGCCAGAGAGAGTTTGGGATCTATAT 586
|| ||| | ||||||| || ||| ||||| ||| ||||||||||| |||||||| |||
Sbjct 575 GTTCTGTAG-TTGATGCGCTATTGAGGTGTAACAAACCAGAGAGAGTATGGGATCTGTAT 633
Query 587 ACTTTTGCATGCGGGCCTTCCAAATTTGGTAACGCAAACCCAAAGGAAAGATTGCTTAAT 646
|||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 634 GCTTTCACATGTGGGCCTTCCAAATTCGGTAACACAAACCCAAAGGAAAGATTGCTTAAT 693
Query 647 GAATATTTCCGTCTTCTCGGAAAAAGTTCA-ATACGAGCATCAATGGATATGATTGAAGA 705
|||||||| || ||||| |||||||||||| | |||||| |||||| |||||||||||||
Sbjct 694 GAATATTTTCGGCTTCTTGGAAAAAGTTCACA-ACGAGCGTCAATGAATATGATTGAAGA 752
Query 706 TGGTGCGTTCACAT-TGTCCAATGAGCTGTGGCGAATAAGC-GACTTGAACTCCAATTAC 763
|| | ||||| | |||||||||| || ||||| || | | |||||||||| |||||
Sbjct 753 CGGAACATTCAC-TCTGTCCAATGACCTTTGGCGTATTA-CTAACTTGAACTCAAATTAT 810
Query 764 AACTTGTGTCAGACTTATCCATTTGCTTTTATGATTCCAAAATCCATAAGTGATGCAGAG 823
|||||||||||| |||||| |||||||| ||| ||||||||||||| ||||||| ||||
Sbjct 811 GACTTGTGTCAGAGTTATCCGTTTGCTTTGATGGTTCCAAAATCCATTAGTGATGAAGAG 870
Query 824 CTGCTCCAGGCGTGTTCTTTCCGGGCAAGATGTCGCTTACCTGTGATCACATGGTGTCAG 883
||| ||||| ||| | |||||||||||||||||||||||||||||||| | ||||||||
Sbjct 871 CTGATCCAGACGTCTACTTTCCGGGCAAGATGTCGCTTACCTGTGATCTCGTGGTGTCAT 930
Query 884 CCAGGAAGTGGAGCTGTGATTGCACGCTCATCACAACCTTTAGTGGGTCTTATGATGAAT 943
||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 931 CCAGGAAGTGGAGCTGTGATTGCTCGCTCATCACAACCTTTAGTTGGTCTGATGATGAAC 990
Query 944 ATGAGGAGTAATCT-TGATGAAAAACTAGTTGCTGCATTCTGCTCTCAGTTACCTGGTGC 1002
||||||||| | || |||||| ||||| || || |||||||| |||| ||| ||||| |
Sbjct 991 ATGAGGAGT-ACCTCTGATGAGAAACTTGTCACTTCATTCTGCACTCAATTAGCTGGT-C 1048
Query 1003 -TAAGGGAGAACGAAGGAAGCTTTATATTGCT-GATGCAAGACCTAGGAAAAATGCATTA 1060
||||||| |||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 1049 ATAAGGGATCACGAAGGAAGCTTTATATCG-TAGATGCAAGACCTAGGAAAAATGCATTA 1107
Query 1061 GCCAATGGAGCAATGGGAGGTGGCTCAGAATCATCTTCCAATTATTTTCAATCTGAAATT 1120
|| |||||||||| |||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 1108 GCAAATGGAGCAAAGGGAGGAGGCTCAGAATCATCTTCAAATTATTTGCAATCTGAAATT 1167
Query 1121 GTTTTCTTT-GGCATAGACAACATACATGCAATGAGGGAGAGCTTTTCCCGCGTTAGAGA 1179
||||| ||| || ||||||||||||||||||||||| ||||| ||||||||| |||| ||
Sbjct 1168 GTTTT-TTTGGGGATAGACAACATACATGCAATGAGAGAGAGTTTTTCCCGCCTTAGGGA 1226
Query 1180 TTATTTAGATATGCACGGTACAACATCATCCGATGGGA-GATCATCGTTCTTGAGACACG 1238
||||||||||||||| |||||||||||||||||||||| | ||||| |||||||| || |
Sbjct 1227 TTATTTAGATATGCATGGTACAACATCATCCGATGGGACG-TCATCATTCTTGAGGCATG 1285
Query 1239 GTGGTTGGACCTGGGGAGGAGGTAATCTTAGTAGTATGTCTGCTTCAGTATCTTTACTTG 1298
|||| ||||| ||||| ||||||||||| ||||||||||| ||||||||||| || ||||
Sbjct 1286 GTGGCTGGACGTGGGGTGGAGGTAATCTCAGTAGTATGTCGGCTTCAGTATCCTTGCTTG 1345
Query 1299 GAGATAGTGGCTGGTTGA-TACACATCCAGAGCGTCTTAGCTGGTGCAGCATGGATTGCT 1357
|||||||||| ||||||| | |||||||||||| |||||||||||| |||||||||||||
Sbjct 1346 GAGATAGTGGGTGGTTGAGT-CACATCCAGAGCATCTTAGCTGGTGTAGCATGGATTGCT 1404
Query 1358 GCACGTGTTGCTATGGAGTCGGCATCAGTTCTTGTGCACTGCAGTGATGGATGGGACAGA 1417
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1405 GCACGTGTTGCTATGGAGTCGGCATCAGTTCTCGTGCACTGCAGTGATGGATGGGACAGA 1464
Query 1418 ACAACTCAGCTTGTTTCTCTTGCGTGCTTATTGCTTGATCCATACTACAGAAC-TTTTGC 1476
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 1465 ACAACTCAGCTGGTTTCTCTTGCATGCTTATTGCTTGATCCATACTACAGAACATTTT-C 1523
Query 1477 TGGGTTTCAGGCTCTTGTCGAAAAGGATTGGCTT-GCTTTTGGTCACCCATTTTCGGATC 1535
||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 1524 TGGGTTTCAGGCTCTTGTCGAAAAGGATTGG-TTAGCATTTGGTCACCCATTTTCGGATC 1582
Query 1536 GTGTAGGAATGCCTAACATATCAGGATCTGGTAATTTTGACTTTCCTAGGCAGTCTTCGT 1595
| || |||||||||||| | || | ||||||||||||||| || || | |||||||| |
Sbjct 1583 GAGTGGGAATGCCTAACGTGTCTGAATCTGGTAATTTTGAATTACCAATTCAGTCTTCTT 1642
Query 1596 CTGCTGGAAGTTTCCCTTCATCTCCTGTGCGTCAGTCTTCAGGATCAGCAGCCT-CACAA 1654
||||| ||||||||||||||||||| ||||| || ||| ||||||||||||| | | |||
Sbjct 1643 CTGCTCGAAGTTTCCCTTCATCTCCAGTGCGGCAATCTCCAGGATCAGCAGC-TGCTCAA 1701
Query 1655 TCTTCAAGCTCTTCCCATGGGCAT-AACAATTATTCACCTATATTTATGCAGTGGATTGA 1713
||||| |||||||| |||||| | ||||| ||||| ||||||||| |||||||| || |
Sbjct 1702 TCTTCTAGCTCTTCATATGGGC-TGAACAACTATTCTCCTATATTTTTGCAGTGGCTTTA 1760
Query 1714 TAGCGTTTCACAGCTAATGCGGATGTATCCTTGTGCTTTTGAGTTTTCTCCGACTTTCCT 1773
| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1761 TTGCGTTTCACAGCTAATGCGGATGTATCCTTCTGCTTTCGAGTTTTCTCCGACTTTCCT 1820
Query 1774 GGTAGATTTTATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGCAACAGTGA 1833
||||||||| | ||| |||||||||||| |||||||||||||||| || || || |||||
Sbjct 1821 GGTAGATTTCACGGACTGCTTGCTTTCAGGTCGTTTTGGGAACTTTTTGTGTAATAGTGA 1880
Query 1834 AAAAGAGAGGGAACAATGTGGGATTGCTGATGCCTGTGGATGCCTATGGGCGTACTTGAC 1893
|||||||||| | |||||||||||| |||| ||||||||||||| ||||| |||||| |
Sbjct 1881 AAAAGAGAGGCAGCAATGTGGGATTTCTGAAACCTGTGGATGCCTTTGGGCCTACTTGGC 1940
Query 1894 TGATCTGCGTTCATTTAG-TGCAACTTCTCATGTCCATTGTAACCCATTCTATGATCCTT 1952
||| ||||||| || | || ||||||||||||||||||||| ||||| ||||||||||
Sbjct 1941 CGATTTGCGTTC-TTCCGGTGGAACTTCTCATGTCCATTGTAATCCATTTTATGATCCTT 1999
Query 1953 TGAAG-TATGACGGCCCATTACTACCTCCTGCAGCATCTCTAGCTCCTACCCTTTGGCCC 2011
||| ||||| ||||||||| |||||||||||||| ||||||| || || || ||||||
Sbjct 2000 C-AAGATATGATGGCCCATTATTACCTCCTGCAGCAGCTCTAGCCCCGACTCTCTGGCCC 2058
Query 2012 CAGTTCCATCTCCGGTGGGCTTGTCCTGAGGAAGCTAAA-GCTGCAGATATTGGAGT-CC 2069
|||||||||||||||||||| || |||| ||| || || || |||| | | || ||
Sbjct 2059 CAGTTCCATCTCCGGTGGGCCTGCCCTGTGGA-GCCGAACGCCACAGAAACCG-AGGACC 2116
Query 2070 AATGTAGAGCCATGACAG-TGAAATATTCCGAAATGCAA-AAGGAGAAAGAAGCAGCAGA 2127
|||||||||||||||| | | || ||||| |||||| || ||||||||||||| ||||||
Sbjct 2117 AATGTAGAGCCATGACTGCT-AAGTATTCAGAAATG-AAGAAGGAGAAAGAAGAAGCAGA 2174
Query 2128 AAG-AAGAGTGGACGAGATATCTT-TCGCAATGGAGTCATTAAGTGCAGAGTTGCT-AA- 2183
||| ||| || |||||| |||||| | ||| |||| ||||| || | |||||| || ||
Sbjct 2175 AAGGAAG-GTAGACGAGTTATCTTCT-GCAGTGGAATCATTGAGCGAAGAGTTACTGAAC 2232
Query 2184 GAGAAAGGCATTTGAGTTGGGTAGCTAGAGAATCAGCAAATCGAGCTACCAAGGAATATG 2243
|||| || || | || | |||||||||||||||||| ||||||| || || ||
Sbjct 2233 GAGAGAG--ATATAAGCCATGCAGCTAGAGAATCAGCAAAGAGAGCTACAAAAGAGCGTG 2290
Query 2244 CAG-CTTTAACCCGAGCAGTACAATCACTCGGGTGCAA-GATTAACTTCAC 2292
||| | | | | ||||| || || |||||||| ||||| | |||| |||||
Sbjct 2291 CAGTCAT-ATCACGAGCTGTGCAGTCACTCGGCTGCAAAG-TTAAATTCAC 2339
> Ahg343046 jgi|Araly1|343046|fgenesh1_pg.C_scaffold_3002809
Length=1065
Score = 719 bits (389), Expect = 0.0
Identities = 445/469 (95%), Gaps = 15/469 (3%)
Strand=Plus/Plus
Query 1018 GAAGCTTTATATTGCTGATGCAAGACCTAGGAAAAATGCATTAGCCAATGGAGCAATGGG 1077
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 24 GAAGCTTTATATTGCCGATGCAAGACCTAGGAAGAATGCATTAGCCAATGGAGCAATGGG 83
Query 1078 AGGTGGCTCAGAATCATCTTCCAATTATTTTCAATCTGAAATTGTTTTCTTTGGCATAGA 1137
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 84 AGGTGGCTCAGAATCACCTTCCAATTATTTTCAATCTCAAATTGTTTTCTTTGGCATAGA 143
Query 1138 CAACATACATGCAATGAGGGAGAGCTTTTCCCGCGTTAGAGATTATTTAGATATGCACGG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 CAACATACATGCAATGAGGGAGAGCTTTTCCCGCGTTAGAGATTATTTAGATATGCACGG 203
Query 1198 TACAACATCATCCGATGGGAGATCATCGTTCTTGAGACACGGTGGTTGGACCTGGGGAGG 1257
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 TACAACATCATCTGATGGGAGATCATCGTTCTTGAGACACGGTGGTTGGACCTGGGGAGG 263
Query 1258 AGGTAATCTTAGTAGTATGTCTGCTTCAGTATCTTTACTTGGAGATAGTGGCTGGTTGAT 1317
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 264 AGGTAATCTTAGTAGTATGTCTGCTTCAGTGTCTTTACTTGGAGATAGTGGCTGGTTGAT 323
Query 1318 ACACATCCAGAGCGTCTTAGCTGGTGCAGCATGGATTGCTGCACGTGTTGCTATGGAGTC 1377
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 324 ACACATCCAGAGCGTCTTAGCTGGTGCAGCATGGATAGCTGCACGTGTTGCTATGGAGTC 383
Query 1378 GGCATCAGTTCTTGTGCACTGCAGTGATGGATGGGACAGAACAACTCAGCTTGTTTCTCT 1437
|||||||||||||||||||||||| | | || | | |||||||||||||||
Sbjct 384 GGCATCAGTTCTTGTGCACTGCAG--A---A-----CA-A-C---TCAGCTTGTTTCTCT 428
Query 1438 TGCGTGCTTATTGCTTGATCCATACTACAGAACTTTTGCTGGGTTTCAG 1486
||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 429 TGCATGCTTCTTGCTTGATCCATACTACAGAACTTTTGCTGGGTTTCAG 477
Score = 381 bits (206), Expect = 2e-104
Identities = 223/231 (97%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 1982 GCAGCATCTCTAGCTCCTACCCTTTGGCCCCAGTTCCATCTCCGGTGGGCTTGTCCTGAG 2041
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 836 GCAGCATCTCTAGCTCCTACCCTTTGGCCCCAGTTCCATCTGCGGTGGGCTTGTCCCGAG 895
Query 2042 GAAGCTAAAGCTGCAGATATTGGAGTCCAATGTAGAGCCATGACAGTGAAATATTCCGAA 2101
||| |||||||||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 896 GAA-CTAAAGCTGCAGATATCGGGGTCCAATGTAGAGCCATGACAGTGAAATATTCTGAA 954
Query 2102 ATGCAAAAGGAGAAAGAAGCAGCAGAAAGAAGAGTGGACGAGATATCTTTCGCAA-TGGA 2160
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 955 ATGCAAAAGGAGAAAGAAGTAGCAGAAAGAAGAGTGGACGAGATATCTTTCGCAATTGGA 1014
Query 2161 GTCATTAAGTGCAGAGTTGCTAAGAGAAAGGCATTTGAGTTGGGTAGCTAG 2211
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GTCATTAAGTGCAGAGTTGCTAAGAGAAAGGCATTTGAGTTGGGTAGCTAG 1065
Score = 220 bits (119), Expect = 4e-56
Identities = 123/125 (98%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 1706 TGGATTGATAGCGTTTCACAGCTAATGCGGATGTATCCTTGTGCTTTTGAGTTTTCTCCG 1765
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 712 TGGATTGATAGCGTTTCACAGCTAATGCGGATGTATCCTTGTGCTTTTGAGTTCTCTCCG 771
Query 1766 ACTTTCCTGGTAGATTTTATGGATTGCTTGCTTTCATGTCGTTTTGGGAACTTCTTATGC 1825
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 772 ACTTTCCTGGTAGATTTTATGGATTGCTTGCTTTCTTGTCGTTTTGGGAACTTCTTATGC 831
Query 1826 AACAG 1830
|||||
Sbjct 832 AACAG 836
Score = 196 bits (106), Expect = 6e-49
Identities = 116/121 (96%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 1501 GGATTGGCTTGCTTTTGGTCACCCATTTTCGGATCGTGTAGGAATGCCTAACATATCAGG 1560
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 555 GGATTGGCTTGCTTTTGGGCACCCATTTTCGGATCGTGTAGGAATGCCTAACATATCAGG 614
Query 1561 ATCTGGTAATTTTGACTTTCCTAGGCAGTCTTCGTCTGCTGGAAGTTTCCCTTCATCTCC 1620
|||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 615 ATCTGGTAATATTGACTTACCAAGGCAGTCTTCTTCTGCTGGAAGTTTCCCTTCATCTCC 674
Query 1621 T 1621
|
Sbjct 675 T 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109623725110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5