BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10560.1
Length=1812
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478391 jgi|Araly1|478391|fgenesh2_kg.3__1092__AT3G10560.1 2610 0.0
Ahg939863 jgi|Araly1|939863|scaffold_600407.1 1018 0.0
> Ahg478391 jgi|Araly1|478391|fgenesh2_kg.3__1092__AT3G10560.1
Length=1765
Score = 2610 bits (1413), Expect = 0.0
Identities = 1658/1776 (93%), Gaps = 18/1776 (1%)
Strand=Plus/Plus
Query 39 TTTTAAAAATGTCATTCTTATCATTTTCTCCTATTTCTCTGGACTTATTATCTAGTAATG 98
||||||||||||||||||||||| || | ||| |||||| ||||| || ||| |||||
Sbjct 1 TTTTAAAAATGTCATTCTTATCA-CTT-T-CTACTTCTCTTGACTTGTTCCCTAATAATG 57
Query 99 TCTTCTTAACCATTCTAGCGATTATCATATCCGGTTTACTTAAAACCATTACGTACCGGA 158
||||||||||||| ||||||| | || ||||||||||||||| |||||||||||||||||
Sbjct 58 TCTTCTTAACCATACTAGCGACTCTCGTATCCGGTTTACTTATAACCATTACGTACCGGA 117
Query 159 AACACAATTCGAACCATTTAAATCTCCCGCCCGGCCCACCAGGATGGCCGGTGATCGGAA 218
||| |||||| |||| ||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 118 AACGCAATTCAAACCGTTTAAATCTCCCGCCAGGCCCACCAGGATGTCCGGTGATCGGAA 177
Query 219 ACTTATTTCAGTTCACGCGCTCCGGGAAACAGTTTTTCGAGTACGTCGAGGATCTCGTAA 278
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 178 ACTTATTTCAGTTCACTCGCTCCGGGAAACAGTTTTTCGAGTACGTTGAGGATCTCGTAA 237
Query 279 AGATCTACGGTCCGATTCTTACTCTCAGGCTTGGTACTCGAACAATGATCATCATCTCCG 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AGATCTACGGTCCGATTCTTACTCTCAGGCTTGGTACTCGAACAATGATCATCATCTCCG 297
Query 339 ACGCCAGTCTCGCCCACGAAGCGTTAATCGAACGTGGAGCACAATTCGCGACCCGACCCG 398
|| | ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 298 ACTCGAGTCTCGCCCATGAAGCGTTAATCGAACGTGGAGCCCAATTCGCGACCCGACCCG 357
Query 399 TTGAAACTCCGACCCGGAAAATCTTCAGCTCCAGTGAAATCACAGTTCATTCCGCTATGT 458
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 358 TTGAAACTCCGACCCGGAAAATATTCAGCTCCAGTGAAATCACAGTTCATTCCGCCATGT 417
Query 459 ATGGACCTGTGTGGAGGTCATTGAGACGGAACATGGTTCAGAACATGCTTAGCTCGAATC 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATGGACCTGTGTGGAGGTCATTGAGACGGAACATGGTTCAGAACATGCTTAGCTCGAATC 477
Query 519 GGCTCAAGGAGTTTGGTTCTGTTAGAAAATCCGCCATGGATAAACTCATCGAGAGAATCA 578
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 478 GGATCAAGGAGTTTGGTTCTGTTAGAAAATCCGCCATGGATAAACTCATCGAGAGGATCG 537
Query 579 AATCTGAAGCTAGAGACAACGATGGACTCGTCTGGGTTCTGCAAAACAGCAGATACGCTG 638
||||||||||||||| |||||| |||||||||||||||||| ||||||| ||||||||||
Sbjct 538 AATCTGAAGCTAGAGGCAACGAAGGACTCGTCTGGGTTCTGAAAAACAGTAGATACGCTG 597
Query 639 CGTTTTGTGTTTTATTAGATATCTGTTTTGGAGTTGAGATGGAAGAGGAATCAATTGAGA 698
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 598 CGTTTTGTGTTTTGTTAGATATGTGTTTTGGGGTTGAGATGGAAGAGGAATCAATTGAGA 657
Query 699 AGATGGATCAGTTGATGACGGCGATATTAAACGCCGTTGATCCAAAACTCCACGATTACC 758
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 658 AGATGGATCAGTTGATGACGGCGATATTAAACGCCATTGATCCAAAACTCCACGATTACC 717
Query 759 TTCCGATCTTAACGCCGTTTAACTACAATGAGAGAAATCGTGCTCTTAAGCTTCGTCGGG 818
||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| || |
Sbjct 718 TTCCGATCTTAACGCCGTTTAACTACAATGAGAGAGATCGCGCTCTGAAGCTTCGCCGAG 777
Query 819 AACTTGTAGATTTCGTCGTCGGATTCATCGAGAAACGACGGAAGGCGATTCGGACCGCAA 878
|||||||||||||||||||| ||||||||||||| |||||| || ||||| || || ||
Sbjct 778 AACTTGTAGATTTCGTCGTCAAATTCATCGAGAAAAGACGGAGGGTGATTCTGATCGAAA 837
Query 879 CGGTATCGTCTTTCTCGTATCTTGATACACTCTTTGATCTTAGAATCATCGAAGGAAGTG 938
||| ||||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 838 CGGCGTCGTCTTTCTCGTATCTTGATACACTCTTTGATCTTAGAGTCGTAGAAGGAAGTG 897
Query 939 AAACGACGCCGTCTGATGAAGATCTTGTAACGCTCTGTTCGGAGTTTCTCAATGCCGGTA 998
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 898 AAACGACGCCGTCTGATGAAGATCTTGTAACGCTCTGTTCGGAGTTTCTCAATGCCGGCA 957
Query 999 CGGACACGACTGGGGCGGCGATCGAGTGGGGAATCGCAGAGTTGATAGCGAATCCCGAGA 1058
|||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 958 CGGATACGACGGGGGCGGCGATCGAGTGGGGACTCGCAGAGTTGATAGCGAATCCCGAGA 1017
Query 1059 TTCAATCTCGACTGTACGATGAGATTAAATCAACGGTTGGAGATCGTGCGGTCGATGAAA 1118
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1018 TTCAATCTCGACTGTACGATGAGATTAAATTAACGGTTGGAGATCGTGCGGTCGATGAAC 1077
Query 1119 GAGACGTGGACAAAATGGTCTTGTTACAAGCTGTAGTCAAAGAGATTCTCCGGCGACATC 1178
|||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1078 GAGATGTGGAAAAAATGGTCTTTTTACAAGCTGTAGTCAAGGAGATTCTCCGGCGACATC 1137
Query 1179 CACCGACTTACTTTACATTAAGTCACGGTGTAACGGAACCAACGACTCTCTCTGGCTATA 1238
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1138 CACCGACTTACTTTACATTAAGTCACGGTGTAACGGAACCGACTACTCTCTCTGGCTATA 1197
Query 1239 ACATCCCTGTCGGGGTCAACATTGAGTTTTATCTTCCCGGAATTAGTGAAGACCCGAAGA 1298
||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1198 ACATCCCAGTCGGGGTCAACATTGAGTTTTATCTTCCGGGAATTAGCGAAGACCCGAAGA 1257
Query 1299 TCTGGTCAGAGCCAAAAAAGTTCGACCCTGACCGGTTCTTATCAGGGCGGGAAGACGCCG 1358
||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1258 TCTGGTCCGAGCCGAAAAAGTTTGACCCGGACCGGTTCTTATCAGGGCGGGAAGACGCCG 1317
Query 1359 ATATAACAGGAGTTGCTGGAGTGAAGATGATGCCTTTTGGTGTTGGCCGTAGGATCTGTC 1418
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1318 ATATAACAGGAGTCGCTGGAGTGAAGATGATGCCTTTTGGTGCTGGCCGTAGGATCTGTC 1377
Query 1419 CGGGGATGGGAATGGCGACGGTACATGTGCATTTGATGATAGCGA-GGATGGTTCAAGAG 1477
|||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1378 CGGGGATGGGAATGGCAACGGTACATGTGCATTTGATGATAGC-ACGGATGGTTCAAGAG 1436
Query 1478 TTCGAGTGGTTAGCCTATCCACCGCAGAGCGAGATGGATTTTGCCGGGAAGTTGGTGTTT 1537
|| |||||||| ||||||||||||||||||||| | |||||||| |||| ||||||||||
Sbjct 1437 TTTGAGTGGTTCGCCTATCCACCGCAGAGCGAGGTAGATTTTGCTGGGAGGTTGGTGTTT 1496
Query 1538 GCGGTTGTGATGAAGAAGCCGTTGAGGGCCATGGTGAGACCTAGGGT--ACAA-TGAAAG 1594
|||||||||||||||||||||||||| |||||||| ||||||||||| | || ||||||
Sbjct 1497 GCGGTTGTGATGAAGAAGCCGTTGAGAGCCATGGTTAGACCTAGGGTTTAAAACTGAAAG 1556
Query 1595 CCGCAGGTTTGTAG-CATATCCAACTTTTAAAAA-TGAATAAATGCTGTATGGAATACAT 1652
|||| || | ||| || ||||| ||||||||| ||||||||| || ||| ||||| |
Sbjct 1557 CCGCGGGAATATAGACAC-TCCAA-TTTTAAAAAATGAATAAATCCTTTATCGAATA--T 1612
Query 1653 GCATAAACTGATAAACACTCTCATGTAAAAATGAATACAAGAAGCATATTGGTACTCAAG 1712
||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||
Sbjct 1613 GCATAAACTGATAAACACTCTCATGTAAAAATGAATACAAG---CATACTGGAACTCAAA 1669
Query 1713 TCATGTTTTCCATTAAGAATCTTTTAGAATTCTGTTATCTTTGAGGGTAAAAACTTAACT 1772
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 TCATGTTTTGCTTTAAGAATCTTTTAGAATTCTGTTATCTTTGAGGGTAAAAACTTAACT 1729
Query 1773 ATG-TTTGTAATAAAAGCTTAGAATGAGAATTTGGT 1807
||| ||||||| ||||||||||||||| ||||||||
Sbjct 1730 ATGATTTGTAAGAAAAGCTTAGAATGATAATTTGGT 1765
> Ahg939863 jgi|Araly1|939863|scaffold_600407.1
Length=1561
Score = 1018 bits (551), Expect = 0.0
Identities = 1177/1470 (80%), Gaps = 80/1470 (5%)
Strand=Plus/Plus
Query 161 CACAATTCGAACCATTTAAATCTCCCGCCCGGCCCACCAGGATGGCCGGT-GATCGGAAA 219
||||||||||| | | || ||||| || |||||||| || |||||||| | | ||||
Sbjct 102 CACAATTCGAAGCGCGTGAACCTCCCTCCAGGCCCACCGGGTTGGCCGGTGGTTGGGAAT 161
Query 220 CTTATTTCAGTTCACGCGCTCCGGGAAACAGTTTTTCGAGTACGTCGA-G-GATCTCGTA 277
| | || |||||| ||||||||||||||||||||||||| |||||||| | ||| | |
Sbjct 162 C-TGTTACAGTTCGCGCGCTCCGGGAAACAGTTTTTCGAATACGTCGACGAGAT-GAG-A 218
Query 278 AAGATCTACGGTCCGATTCTT-AC-TCTCAGGCTTGGTACT-CGAACAATGATCATCATC 334
||||| ||||| || ||| || || | | ||| ||| | | ||||||||||||||||||
Sbjct 219 AAGATGTACGGCCCAATT-TTCACGT-TAAGG-ATGGGAATCCGAACAATGATCATCATC 275
Query 335 TCCGACGCCAGTCTCGCCCACGAAGCGTTAATCGAACGTGGAGCACAATTCGCGACCCGA 394
|||||||| | |||||| ||| |||| || ||||| |||||||| |||||||| ||||||
Sbjct 276 TCCGACGCAAATCTCGCACACCAAGCCTTGATCGAGCGTGGAGCCCAATTCGCAACCCGA 335
Query 395 CCCGTTGAAACTCCGACCCGGAAAATCTTCAGCTCCAGTGAAATCACAGTTCATTCCGCT 454
||||| ||||| |||||||||||||||||||| || || || ||||| || ||||||||
Sbjct 336 CCCGTCGAAACACCGACCCGGAAAATCTTCAGTTCTAGCGATATCACCGTCCATTCCGCG 395
Query 455 ATGTATGGACCTGTGTGGAGGTCATTGAGACGGAACATGGTTCAGAACATGCTTAGCTCG 514
||||| || || |||||| | | ||||||||||||||||||| |||||||| |||||
Sbjct 396 ATGTACGGTCCCGTGTGGCGAACCCTGAGACGGAACATGGTTCAAAACATGCTCAGCTCT 455
Query 515 AATCGGCTCAAGGAGTTTGGTTCT-GTTAGAAAATCCGCCATGGATAAA-CTCATCGAG- 571
| ||| | ||||| ||||||| | | |||||||||||||| || ||| ||| | |||
Sbjct 456 AGCCGGTTAAAGGAATTTGGTT-TAATCAGAAAATCCGCCATTGA-AAAGCTCGTGGAGA 513
Query 572 AGAATCAAATCTGAAGCTAGAG-ACAACGATGGACTCGTCTGGGTTCTGCA-AAACAGC- 628
|| |||||||| ||||||| || || |||| |||||||| |||||| || | |||| ||
Sbjct 514 AG-ATCAAATCGGAAGCTAAAGAAC-ACGAAGGACTCGTTTGGGTTTTG-AGAAAC-GCT 569
Query 629 AGATACGCTGCGTTTTGTGTTTTATTAGATATCTGTTTTGGAGTTGAGATGGAAGAGGAA 688
|||| |||||| |||||| | || |||||||| ||||||||| | || |||||||| |||
Sbjct 570 AGATTCGCTGCTTTTTGTATCTTGTTAGATATGTGTTTTGGAATCGAAATGGAAGAAGAA 629
Query 689 TCAATTGAGAAGATGGATCAGTTGATGACGGCGATATTAAACGCCGTTGATCCA-AAACT 747
|| |||||||||||||||||| ||||||||| ||| |||| ||||||||||||| || |
Sbjct 630 TCGATTGAGAAGATGGATCAGATGATGACGGAGATTTTAATCGCCGTTGATCCACGAA-T 688
Query 748 CCACGATTACCTTCCGA-TCTTAACGCCGTTTAACTACAATGAGAGAAATCGTGCTCT-T 805
||||| |||||||||| || |||| |||||| ||| ||| |||||||| |||||
Sbjct 689 TCACGACTACCTTCCGATTC-TAACTCCGTTTTACTTCAACGAGAGAAAAAAAGCTCTGG 747
Query 806 AAGCTTCGTCGGGAACTTGTAGATTTCGTCGTCGGATTCATCGAGAA---ACGA-CGGAA 861
|| ||||| ||| ||||||| || ||||| ||||||||||||||||| |||| |||
Sbjct 748 AA-CTTCGCCGGAAACTTGTCGAATTCGTTGTCGGATTCATCGAGAAGCGACGATCGG-C 805
Query 862 GG--CG--AT-TCGG-ACCG---CAACGG-TATCGTCTTTCTCGTATCTTGATACACTCT 911
|| || || ||| ||| ||||| | |||||||| ||||||||||||| | |
Sbjct 806 GGTTCGAAATCCCGGCTCCGATAAAACGGCGA-CGTCTTTCGCGTATCTTGATACTTTAT 864
Query 912 TTGATCTTAGAATCATCGAAGGAAGTGAAACGACGCCGTCTGATGAAGATCTTGTAACGC 971
| ||||| || | |||| || |||||||||||||||||||||||||||| || || |
Sbjct 865 TCGATCTCAG-A--GTCGATGGCCGTGAAACGACGCCGTCTGATGAAGATCTCGTGACTC 921
Query 972 TCTGTTCGGAGTTTCTCAATGCCGGTACGGACACGACTGGGG-CGGCGATCGAGTGGGGA 1030
| || |||||||||||||| ||||||||||| ||||| |||| ||||||| || ||||||
Sbjct 922 TGTGCTCGGAGTTTCTCAACGCCGGTACGGATACGAC-GGGGACGGCGATTGAATGGGGA 980
Query 1031 ATCGCAGAGTTGATAGCGAATCCCGAGATTCAATCTCGACTGTACGATGAGATTAAATCA 1090
||||| ||| |||| ||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 981 ATCGCGGAGCTGATTTCGAATCCAGAGATTCAATCTCGGCTGTACGATGAGATTAAATCA 1040
Query 1091 ACGGTTGGAGAT---CGTGCGGTCGATGA-AAGAGACGTGGACAAAATGGTCTTGTTACA 1146
||||| |||||| ||| |||| || || || ||| ||||| ||||||||||| |||||
Sbjct 1041 ACGGTGGGAGATGATCGTACGGTAGAGGAGAA-AGATGTGGATAAAATGGTCTTCTTACA 1099
Query 1147 AGCTGTAGTCAAAGAGATTCTCCGGCGACATCCACCGACTTACTTT-ACATTAAGTCACG 1205
|||| | || || ||| |||||||| ||||||| ||||| || ||| || |||| |||||
Sbjct 1100 AGCTTTTGTTAAGGAGCTTCTCCGGAGACATCCGCCGACGTA-TTTCACGTTAACTCACG 1158
Query 1206 GTGTAACGGAACCAACGACTCTCTCTGGCTATAACATCCCTG-TCGGGG-TCAACATTGA 1263
| || ||||| || |||| |||||| || || | || | || | || | | || ||||
Sbjct 1159 GCGTTACGGAGCCGACGAATCTCTCCGGTTACGATATTC-TGGTTGGAGCT-AATGTTGA 1216
Query 1264 GTTTTATCTTCCCGGAATTAGTGAAGACCCGAAGATCTGGTC-AGAGCCA-AAAAAGTTC 1321
|||||||||||| || ||||| || ||||||||||||||||| | | || ||||| |||
Sbjct 1217 GTTTTATCTTCCGGGTATTAGCGAGGACCCGAAGATCTGGTCTAAA-CCGGAAAAA-TTC 1274
Query 1322 GACCCTGA-CCGGTTCT-TATCAGGGCGG-GAAGACGCCGATATAACAGGAGTTGCTGGA 1378
||||| || |||||| | || |||| || |||||||||||| |||| ||||| || ||
Sbjct 1275 GACCC-GAACCGGTT-TATAACAGGT-GGAGAAGACGCCGATTTAACCGGAGTCGCCGGG 1331
Query 1379 GTGAAGATGATGCCTTTTGGTGTTGGCCGTAGGATCTGTCCGGGGATGGGAATGGC-GAC 1437
|| ||||||||||| || || |||||||| |||| || |||||| | |||||||| |
Sbjct 1332 GTTAAGATGATGCCGTTCGGAATTGGCCGTCGGATTTGCCCGGGGCTTGGAATGGCAGT- 1390
Query 1438 GGTACATGTGCATTTGATGATAGCGAGGATGGTTCAAGAGTTCGAGTGGTTAGC-C-TAT 1495
|||||| ||| | | ||| ||||||||||||||||||||||||||||| | | | ||
Sbjct 1391 GGTACACGTGGAGCTAATGCTAGCGAGGATGGTTCAAGAGTTCGAGTGG--ACCACGTAC 1448
Query 1496 CCACCGCAGAGCGA-GATGGATTTTGCCGGGAAGTTGGTGTTTGCGGTTGTGATGAAGAA 1554
|| ||| |||| | | ||||||| |||| || |||||||| ||||| |||||||||||
Sbjct 1449 CCGCCGGGGAGCCAAG-TGGATTTCACCGGCAAATTGGTGTTCGCGGTGGTGATGAAGAA 1507
Query 1555 GCCGTTGAGGGCCATGGTGAGACCTAGGGT 1584
|||||||| || | ||| | | |||||||
Sbjct 1508 TCCGTTGAGAGCGAGGGTTAAAGCTAGGGT 1537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68029177570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5