BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10570.1
Length=1738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478392 jgi|Araly1|478392|fgenesh2_kg.3__1093__AT3G10570.1 2603 0.0
Ahg487247 jgi|Araly1|487247|fgenesh2_kg.6__381__AT5G04660.1 1155 0.0
> Ahg478392 jgi|Araly1|478392|fgenesh2_kg.3__1093__AT3G10570.1
Length=1684
Score = 2603 bits (1409), Expect = 0.0
Identities = 1543/1609 (96%), Gaps = 4/1609 (0%)
Strand=Plus/Plus
Query 25 GAA-AAGAAGAAGAAAAACAAGAAGCTAAAAATGTCTATCCTTTCGTTTCCTCACACTTT 83
||| ||||| || |||||||||||||| ||||||||| | ||||||||||||| ||||||
Sbjct 23 GAAGAAGAAAAACAAAAACAAGAAGCT-AAAATGTCTCTTCTTTCGTTTCCTCCCACTTT 81
Query 84 CTTTAACAT-CTCTCCTTCACTCTTCTACACTATCCTTATATCCAGTTTAGTTCTACTGA 142
||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 82 CTTTAACATAC-CTCCTTCACTCTTCTACACCATCCTTATATCCAGTTTAGTTCTACTGA 140
Query 143 TCCTCACGCGCCGGAGTGCTAAATCAAAGATCGTGAAGCTTCCTCCAGGTCCTCCGGGGT 202
||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| |
Sbjct 141 TCCTCACGCGCCGGAGTTCTAAATCAAAGCGCGTGAAGCTTCCACCAGGTCCTCCGGGTT 200
Query 203 GGCCGGTGGTTGGAAACCTCTTCCAATTCGCGCGCTCCGGGAAGCAGTTTTACGAGTACG 262
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 201 GGCCGGTGGTTGGAAACCTCTTCCAATTCGCGCGCTCCGGGAAGCAGTTTTACGAGTATG 260
Query 263 TTGACGATGTAAGGAAAAAATACGGTCCTATCTACACGTTGAGGATGGGAAGTCGAACAA 322
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 TTGATGATGTAAGGAAAAAATACGGTCCTATCTACACGTTGAGGATGGGAAGTCGAACAA 320
Query 323 TGATCATAATCTCTGATTCAGCTCTCGTCCACGACGTTCTGATTCAACGTGGACCAATGT 382
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 321 TGATCATCATCTCTGATTCAGCTCTCGTCCACGACGTTCTGATTCAGCGTGGACCAATGT 380
Query 383 TCGCAACCCGACCCACCGAGAATCCGACCCGAACCATCTTCAGCTCCAACACTTTCACCG 442
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 381 TCGCAACCCGACCCACCGAGAATCCTACCCGAACTATCTTCAGCTCCAACACTTTCACCG 440
Query 443 TTAACGCTTCAGCGTACGGTCCAGTATGGCGATCCCTGAGAAAGAACATGGTACAGAACA 502
| ||||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 441 TCAACGCTTCAGCGTACGGACCCGTGTGGCGATCCCTGAGAAAGAACATGGTACAGAACA 500
Query 503 TGTTAAGCTCGATCCGGTTCAGAGAATTCGGGTCGTTGAGACAATCCGCAATGGATAAAC 562
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 501 TGTTAAGCTCGATCCGGTTCAGAGAATTCGCGTCGTTGAGGCAATCCGCAATGGATAAAC 560
Query 563 TCGTCGAGAGGATCAAATCAGAAGCTAAAGACAACGACGGTCTTGTTTGGGTCCTAAGAA 622
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 561 TCGTCGAGAGGATCAAATCAGAAGCTAAAGACAACGACGGTCTTGTTTGGGTACTAAGAA 620
Query 623 ACGCAAGATTCGCTGCGTTTTGTATTCTTTTGGAGATGTGTTTTGGAATCGAAATGGATG 682
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 621 ACGCAAGATTCGCTGCGTTTTGTATTCTTTTAGAGATGTGTTTTGGAATCGAAATGGATG 680
Query 683 AAGAATCGATATTGAATATGGATCAAGTGATGAAGAAAGTGTTGATCACACTCAATCCAA 742
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 681 AAGAATCGATTTTGAATATGGATCAAGTGATGAAGAAAGTTTTGATCACACTCAATCCAA 740
Query 743 GACTCGATGATTATCTCCCGATTCTTGCTCCGTTTTATTCCAAGGAGAGAGCAAGAGCTC 802
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 741 GACTCGATGATTATCTCCCGATCCTTGCTCCGTTTTACTCCAAGGAGAGAGCAAGAGCTC 800
Query 803 TCGAGGTTCGTTGTGAACAAGTTGATTTCATCGTTAAACTCATCGAGAGACGACGGAGAG 862
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 801 TCGAGGTTCGTCGTGAACAAGTTGATTTCATCGTTAAATTCATCGAGAGACGACGGAGAG 860
Query 863 CGATTCAGAAGCCGGGGACTGATAAAACGGCGTCGTCTTTTTCTTATCTTGATACACTCT 922
|||||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 861 CGATTCAGAATCCGGGGACTGATAAAACAGCGTCGTCTTTCTCTTACCTTGATACACTCT 920
Query 923 TTGACCTTAAAACCGAAGGTCGTATAACGACGCCGTCTAATGAAGAGCTTGTGTCGCTCT 982
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 921 TTGACCTTAAAACCGAAGGTCGTAAAACGACGCCGTCTAATGAAGAGCTTGTGTCGCTTT 980
Query 983 GCTCTGAGTTTCTTAACGGTGGTACGGATACGACGGGGACGGCGATCGAGTGGGGTATAG 1042
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 981 GCTCGGAGTTTCTTAACGGGGGTACGGATACGACGGGGACGGCGATCGAGTGGGGTATCG 1040
Query 1043 CGCAACTGATTGTGAATCCTGAGATTCAATCTCGGCTCTACGATGAGATTAAATCAACGG 1102
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 CGCAGCTGATCGTGAATCCTGAGATTCAATCTCGGCTCTACGATGAGATTAAATCAACGG 1100
Query 1103 TTGGAGATCGTGAGGTTGAGGAAAAAGATGTGGATAAAATGGTCTTTTTACAAGCCGTTG 1162
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1101 TCGGAGATCGTGAGGTTGAGGAGAAAGATGTGGATAAAATGGTCTTTTTACAAGCCGTCG 1160
Query 1163 TTAAGGAGATTTTACGGAAACATCCTCCGACATACTTTACGTTGACTCATTCCGTCACGG 1222
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 1161 TTAAGGAGATTTTACGGAAACATCCTCCGACGTACTTTACGTTGACTCACTCCGTGACGG 1220
Query 1223 AGCCGACGACGGTCGCCGGTTACGATGTTCCCGTTGGGATTAACGTTGAGTTTTATCTTC 1282
||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1221 AGCCGACGACGGTCGGCGGTTACGATGTTCCCGTTGGGATCAACGTCGAGTTTTATCTTC 1280
Query 1283 CGGGAATAAATGAGGATCCAAAGCTTTGGTCTGATCCGAAGAAATTTAACCCGGATCGGT 1342
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1281 CGGGTATAAATGAGGATCCGAAGCTTTGGTCTGATCCGAAGAAATTTAACCCTGATCGGT 1340
Query 1343 TTATTTCGGGTAAGGAGGAAGCGGACATAACCGGTGTAACCGGAGTTAAAATGATGCCGT 1402
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1341 TTATTTCGGGTAAGGAGGAAGCGGACATAACCGGCGTAACCGGAGTTAAAATGATGCCGT 1400
Query 1403 TCGGTATTGGCCGTCGGATCTGTCCGGGGCTAGCGATGGCGACCGTACACGTGCATTTGA 1462
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1401 TTGGTATTGGCCGTCGGATCTGTCCGGGGCTAGCGATGGCGACCGTACACGTGCACTTGA 1460
Query 1463 TGCTAGCGAAGATGGTTCAAGAGTTTGAGTGGAGCGCTTATCCGCCGGAAAGTGAAATTG 1522
|||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||
Sbjct 1461 TGCTAGCGAAGATGGTTCAACAGTTTGAGTGGAGCGCTTATCCGGCGGGAAGTGAAATTG 1520
Query 1523 ATTTCGCCGGGAAATTGGAGTTTACGGTGGTAATGAAGAAACCGTTGAGAGCCATGGTTA 1582
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 ATTTCGCGGGGAAATTGGAGTTTACGGTGGTAATGAAGAAACCGTTGAGAGCCATGGTTA 1580
Query 1583 AGCCAAGGGTCTAAATTTGTTTAATTATGAAAACGATGTGTGCTTATAT 1631
| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1581 AACCAAGGGTCTAAATTTGTTTAATTATGAAAACGATGTGTGCTTATAT 1629
Score = 93.5 bits (50), Expect = 5e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1655 TGAAATTTGTCAAGTGCTTTGTGAATTTCTAGTAAAAGATTTCATTTATTGTCAAA 1710
||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TGAAATTTGTCGAGGGCTTTGTGAATTTCTAGTAAAAGATTTCATTTATTGTCAAA 1684
> Ahg487247 jgi|Araly1|487247|fgenesh2_kg.6__381__AT5G04660.1
Length=1642
Score = 1155 bits (625), Expect = 0.0
Identities = 1178/1440 (82%), Gaps = 57/1440 (4%)
Strand=Plus/Plus
Query 181 CTTCCTCCAGGTCCTCCGGGGTGGCCGGTGGTTGGAAACCTCTTCCAATTCGCGCGCTCC 240
|||||||||||||| || || |||||||||| |||||| | ||||| ||||||||||||
Sbjct 139 CTTCCTCCAGGTCCGCCAGGTTGGCCGGTGGCCGGAAACTTATTCCAGTTCGCGCGCTCC 198
Query 241 GGGAAGCAGTTTTACGAGTACGTTGACGATG-T-AAGGAAAAAATACGGTCCTATCTACA 298
|| |||| ||||| ||| |||| || || | | || ||||| ||||| || || | ||
Sbjct 199 GGTAAGCCGTTTTTCGAATACGCAGAGGA-GCTCAA-GAAAACGTACGGCCCAATTTTCA 256
Query 299 CGTTGAGGATGGGAAGTCGAACAATGATCATAATCTCTGATTC-AGCTCTCGTCCACGAC 357
| |||| ||||| | ||| || |||||||| |||| || | || ||| ||||||||
Sbjct 257 CACTGAGAATGGGGACTCGCACGATGATCATCCTCTCCGACGCAAG-TCTAGTCCACGAA 315
Query 358 G-TTCTGATTCAACGTGGACCAATGTTCGCAACCCGACCCACCGAGAATCCGACCCGAAC 416
| || |||| ||||| || | ||||||| | || ||| |||||||||||||||||||
Sbjct 316 GCTT-TGATCCAACGCGGTGCTCTGTTCGCTTCACGTCCCGCCGAGAATCCGACCCGAAC 374
Query 417 CATCTTCAGCTCCAACACTTTCACCGTTAACGCTTC-AGCGTACGGTCCAGTATGGCGAT 475
|||||||||| |||| |||||||| ||||| | | ||||||||||| |||||||
Sbjct 375 AATCTTCAGCTGTAACAAATTCACCGTCAACGCCGCTA-AATACGGTCCAGTGTGGCGAT 433
Query 476 CCCTGAGAAAG-AACATGGTACAGAACATG-TTAAGCTCGATC-CGGTTC-AGAGAATTC 531
| ||||| ||| |||||||| || |||||| || ||||| | | || || || || ||
Sbjct 434 CACTGAG-AAGAAACATGGTTCAAAACATGCTT-AGCTC-AACACGCCTCAAG-GAGTTT 489
Query 532 GGGTCGTTGAGACAATCCGCAATGGATAAACTCGTCGAGAGGATCAAATCAGAAGCTAAA 591
|| || |||||||||| || |||||||||||| |||||||||||||||| ||||||| |
Sbjct 490 GGATCACTGAGACAATCGGCCATGGATAAACTCATCGAGAGGATCAAATCGGAAGCTAGA 549
Query 592 GACAACGACGGTCTTGTTTGGG-TCCTAAGAAACGCAAGATTCGCTGCGTTTTGTATTCT 650
||||||||||| || | |||| || ||| ||||||||||||||||||||||||||||||
Sbjct 550 GACAACGACGGACTAATCTGGGTTCTTAA-AAACGCAAGATTCGCTGCGTTTTGTATTCT 608
Query 651 TTTGGAGATGTGTTTTGGAATCGAAATGGATGAAGAATCGATATTGAATATGGATCAAG- 709
|| || |||||||| |||||||| |||||||||||||| || ||| ||||| | ||
Sbjct 609 ATTAGAAATGTGTTTCGGAATCGAGATGGATGAAGAATCAATCGAGAAGATGGA-CGAGA 667
Query 710 TGATGAAGAA-AGTGTTGATCACAC-TCAATCCAAG-ACTCGATGATTATCTCCCGATTC 766
| |||| || |||||||| || | | ||||| | || ||| |||||||| |||||||
Sbjct 668 TTTTGAA-AACTGTGTTGATGAC-CGTTGATCCACGAAC-CGACGATTATCTTCCGATTC 724
Query 767 TTGCTCCGTT-TTATTCCAAGGAGAGAGCAA-GAGCTCTCGAGGTTCGTTGTGAACAAGT 824
| |||||||| || ||||| ||||| | || |||||||||| ||||| ||||||||||
Sbjct 725 TCGCTCCGTTCTT-CTCCAAAGAGAG-GAAACGAGCTCTCGAAGTTCGCCGTGAACAAGT 782
Query 825 TGATTTCATCGTTAAACTCATCGAGAGACGACGGAGAGCGATTCAGAAGCCGGGGA-CTG 883
|||| | |||| | | ||||| ||||||||||||||||||||||| || ||| |||
Sbjct 783 CGATTACGTCGTCGGAGTTATCGAAAGACGACGGAGAGCGATTCAGAATCC-AGGATCTG 841
Query 884 ATAAAACGGCGTCGTCTTTTTCTTATCTT-GATACACTCTTT-GACCTT-AAAACCGAAG 940
||||||||||||||||||| || || ||| |||||||| ||| || ||| |||| |||||
Sbjct 842 ATAAAACGGCGTCGTCTTTCTCCTA-CTTAGATACACT-TTTCGA-CTTAAAAATCGAAG 898
Query 941 GTCGTATAACGACGCCGTCTAATGAAGAGCTTGTGTCGCTCTGCTCTGAGTTTCTTAACG 1000
|||||| ||||||||||||||| |||||||| ||| | ||||||||||||||||| ||||
Sbjct 899 GTCGTAAAACGACGCCGTCTAACGAAGAGCTCGTGACTCTCTGCTCTGAGTTTCTCAACG 958
Query 1001 GTGGTACGGATACGACGGGGACGGCGATCGAGTGGGGTATAGCGCAACTGATTGTGAATC 1060
||||||||||||||||||||||||||||||||||||| ||||| || ||||||| ||| |
Sbjct 959 GTGGTACGGATACGACGGGGACGGCGATCGAGTGGGGGATAGCTCAGCTGATTGCGAAGC 1018
Query 1061 CTGAGATTCAATCTCGGCTCTACGATGAGATTAAATCAACGGTTGGAGATCGT-G-AGG- 1117
|||||||||||||||||||||||||||||||| |||||||||| |||| | || | |||
Sbjct 1019 CTGAGATTCAATCTCGGCTCTACGATGAGATTGAATCAACGGTGGGAGGTGGTCGTAGGG 1078
Query 1118 TTGAGGAAAAAGATGTGGATAAAATGGTCTTTTTACAAGCCGTTGTTAAGGAGATTTTAC 1177
|| | || |||||||||||||||||||||||||||||||| ||||||| ||| || | |
Sbjct 1079 TTAATGAGAAAGATGTGGATAAAATGGTCTTTTTACAAGCTTTTGTTAAAGAGCTTCTCC 1138
Query 1178 GGAAACATCCTCCGACATACTTTACGT-TGACTCATTCCGTCACGGAGCCGACGACGGTC 1236
|||||||||| ||||| || ||| | | |||| || |||| | |||| |||||||| |
Sbjct 1139 GGAAACATCCGCCGACTTATTTTTC-TCTGACGCACGCCGTTATGGAGACGACGACGCTT 1197
Query 1237 GCCGGTTACGATGTTCCCGTTGG-GATTAACGTTGAGTTTTATCTTCCGGGAATAAATGA 1295
|||||||| ||| |||||| || | ||||||| ||| ||||||| ||||| |||| ||
Sbjct 1198 GCCGGTTATGATATTCCCGCCGGCG-TTAACGTCGAGATTTATCTGCCGGGTATAAGCGA 1256
Query 1296 GGATCC-A-AAGCTTTGGTCTGATCCGAAGAAA-TTTAACCCGGATCGGTTTAT-TTCGG 1351
|||||| | || ||||| | | ||||| ||| ||| | ||||| |||||| | || ||
Sbjct 1257 GGATCCGAGAA--TTTGGAATAACCCGAA-AAAGTTTGATCCGGACCGGTTTTTGTT-GG 1312
Query 1352 GTAAGGAGGAAGCGGACATAACCGGTG-TAACCGGAGTTAAAATGATGCCGTTCGGTATT 1410
||||||| || || ||||||||||| | | | ||||| || ||||| ||||| ||| |
Sbjct 1313 GTAAGGAAGATGCTGACATAACCGG-GATTAGTGGAGTGAAGATGATTCCGTTTGGTGTG 1371
Query 1411 GGCCGTCGGATCTGTCCGGGGCTAGCGATGGCGACCGTACACGTGCATTTGATGCTAGCG 1470
|||||| |||||||||| ||||| || ||||| ||||||||||||||||||||||| |||
Sbjct 1372 GGCCGTAGGATCTGTCCAGGGCTTGCAATGGCAACCGTACACGTGCATTTGATGCTTGCG 1431
Query 1471 AAGATGGTTCAAGAGTTTGAGTGGAGCGCTTATCCGCCGGAAAGTGAAATTGATTTCGCC 1530
||||||||| ||||| |||||| | ||||||||||||| |||||| ||||||||||||
Sbjct 1432 CGGATGGTTCAGGAGTTCGAGTGGTGTGCTTATCCGCCGGGAAGTGAGATTGATTTCGCC 1491
Query 1531 GGGAAATTGGAGTTTACGGTGGTAATGAAGAAACCGTTGAGAGCCATGGTTAAGCCAAGG 1590
|| |||||||||||||||||||| |||||||| ||||||||||| ||||| || ||||||
Sbjct 1492 GGTAAATTGGAGTTTACGGTGGTGATGAAGAATCCGTTGAGAGCTATGGTCAAACCAAGG 1551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65210499440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5