BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10572.1
Length=1278
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478393 jgi|Araly1|478393|fgenesh2_kg.3__1094__AT3G10572.1 1709 0.0
Ahg906144 jgi|Araly1|906144|Al_scaffold_0003_3272 1480 0.0
> Ahg478393 jgi|Araly1|478393|fgenesh2_kg.3__1094__AT3G10572.1
Length=1193
Score = 1709 bits (925), Expect = 0.0
Identities = 1117/1206 (93%), Gaps = 28/1206 (2%)
Strand=Plus/Plus
Query 76 ACAATGGAGGCAACTGATATTTGGGGAGAAATTGAACGTTCTGAGAGTTACCTAGTGTGC 135
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ACAATGGATGCAACTGATATTTGGGGAGAAATAGAACGTTCTGAGAGTTACCTAGTGTGC 60
Query 136 TCTATGTATGAAGAGGCAGAGTCATTATCTTCCTCTATACTGAAAAGAATATTTGGCAAC 195
||||||||||||||||||||||||||||| || |||| |||||||| |||||||||||||
Sbjct 61 TCTATGTATGAAGAGGCAGAGTCATTATCCTCTTCTACACTGAAAATAATATTTGGCAAC 120
Query 196 ATTGATGTTTTATCCGACGAAGCTTCTCAAGGTGATCATCAATTTCATGATATGTTGGAA 255
||||||||| ||| | || || || || ||||| ||||||||||| || |||
Sbjct 121 ATTGATGTTCTAT-C--CG-AG--------GGAGAACATCAGTTTCATGATATTTTAGAA 168
Query 256 TCTGCTGGTATGGTCTTAGTTCAATCCTTGCATGGAATCGGCAGGACAGTTGAGATTGTA 315
|||||||| ||||| ||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 169 TCTGCTGGCATGGTTTTAGTCCAATCCTTGCATGGAATCAGCAGGACAGTTGAGATTGTG 228
Query 316 AATGAGTTAAGAGATGTGTTTGGAGAAGTTGCAGCTATTCCTGTTCAAGTTCTTCTTACT 375
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 229 AATGAGTTAAGAGATGCGTTTGGAGAAGTTGCAGCTATTCCTGTTCAAGTTCTTCTCACT 288
Query 376 GGAGTATGCCTTCAAATATCAAATGGTTCCTATTTGGGTGTACGTGATATTCTGGAAGAG 435
||| |||||||||||||||||||||||||||| | ||||||| |||| ||||||||||||
Sbjct 289 GGAATATGCCTTCAAATATCAAATGGTTCCTACTCGGGTGTATGTGAGATTCTGGAAGAG 348
Query 436 TTCTTTAGAATATGGGTTTACAAGGACAACCACTATATCCTAAATGATGCTGGAGTAAGT 495
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 349 TTCTTTAGCATATGGGTTTACAAGGACAGCCACTATATCCTAAATGATGCTGGAGTAAGT 408
Query 496 ACAAAAGGATTCCATGCGAAAAACTGTTTAGATATTGATGAGTACATGGAAGTCGTTGAG 555
||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 409 GCAAAAGGATTCCATGAGAAAAACTGTTTAGATATTGATGAGTACATGGAAGTAGTGGAG 468
Query 556 CTGTATACTTTTGGAGTTCTTGCAAAATTTTCAAATGACATGGGCCTAGCCATTTCATGG 615
|||||||| |||||||||||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct 469 CTGTATACCTTTGGAGTTCTTGCAAAAGTTTCAAACGACATAGGCCTAGCCATTTCATGG 528
Query 616 GTTGAAAAAGCTGCATTGCCTGAGGAAAGGCGACAGGGGATTTTGAGAAGATTGCATTCC 675
||||| |||||||| || ||||||||||| |||||||||||||||||||| ||||||||
Sbjct 529 GTTGAGAAAGCTGCGTTACCTGAGGAAAGACGACAGGGGATTTTGAGAAGCTTGCATTCG 588
Query 676 TTACTTTC--TC---TCA--AAA-----C--A-GCTAGTTCTTTTGAGGAAAATTCCAAA 720
|||||||| || || ||| | | ||||||||||||||||||||||| |||
Sbjct 589 TTACTTTCATTCAAAACAGCAAACGTTCCAGACGCTAGTTCTTTTGAGGAAAATTCTAAA 648
Query 721 GATTCTTCTTATGCTGTAGTGAATAACAAGAAGTCGTTGGGTAATGAAAAGAATGATGAG 780
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||
Sbjct 649 GATTCTTCTTATGCTGTAGTGAATAACAAGAAGTCGTTGGCCAATGAAAAGAAGGATAAG 708
Query 781 ATTGATTCTTTCCTGAAACTATCTAAACAGCATGAACCTTGGTCACTTTGGTCATCCCAT 840
||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 709 ATTGATTCTGTCCTGAAACTCTCTAAACAACATGAACCTTGGTCACTTTGGTCATCCCAT 768
Query 841 CCTCTAAGCCTCAAGGTTGGTAATACCCAATTTAGCATGTCCAGGGGAAAGGTTGCCGTA 900
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 769 CCTCTAAGCCTCAAGGTTGGTAATACCCAATTTAGCATGTCCAGGGGAAAGTTTGCCATA 828
Query 901 AGCCTTGTTGGATTAATCATATGTTATGCTTTGAAGAGAAAACGAGCTGCTTTGATAAGG 960
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 829 AGCCTTGTTGGATTAATCATATGTTATGCCTTGAAGAGAAAACGAGCTGCTTTGATACGG 888
Query 961 ATCATTCGCAGGCAAATGGAGTCCACGAGAAAAGCAATAGTAGATTTCTGGAAGCTTGCG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ATCATTCGCAGGCAAATGGAGTCCACGAGAAAAGCAATAGTAGATTTCTGGAAGCTTGCG 948
Query 1021 TTTTCATACCAAGTGAATCCTCTTGCAGCAATTCAATCCATACCAAGCACCACAACATGA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 TTTTCATACCAAGTGAATCCTCTTGCAGCAATTCAATCCATACCAAGCACCACAACATGA 1008
Query 1081 AGATGGATCAAAATTTGGCATTGAAAATGCCTATGTAATACCAAACCAACACTCAAATAT 1140
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 AGATGGATCAAA-TTTGGTATTGAAAATGCCTATGTAATACCAAACCAACACTCAAATAT 1067
Query 1141 TTTCATAATTGGTTCTATTCAAAGTTCAAACTTAGTTTTCCCAAACTTCTCCACTTATAT 1200
||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1068 TTTTATAATTGGTTCTATTCAAAGTTCAAACTTACTTTTCCCAAACTCCTCCACTTATAT 1127
Query 1201 CAAACTGTAATCACTGAACATGATTAAGAACCCGTTGCATATTATGTTTTATCTATATTT 1260
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||
Sbjct 1128 CAAACTGTAATCACTGAACATGATTAAGAACCCATTGCATATTCTGTTTTATCTACCTTT 1187
Query 1261 CTCCTT 1266
||||||
Sbjct 1188 CTCCTT 1193
> Ahg906144 jgi|Araly1|906144|Al_scaffold_0003_3272
Length=1014
Score = 1480 bits (801), Expect = 0.0
Identities = 949/1018 (93%), Gaps = 20/1018 (2%)
Strand=Plus/Plus
Query 79 ATGGAGGCAACTGATATTTGGGGAGAAATTGAACGTTCTGAGAGTTACCTAGTGTGCTCT 138
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGCAACTGATATTTGGGGAGAAATCGAACGTTCTGAGAGTTACCTAGTGTGCTCT 60
Query 139 ATGTATGAAGAGGCAGAGTCATTATCTTCCTCTATACTGAAAAGAATATTTGGCAACATT 198
|| ||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||
Sbjct 61 ATCTATGAAGAGGCAGAGTCATTATCCTCTTCTATACTTAAAAGAATATTTGGAAACATT 120
Query 199 GATGTTTTATCCGACGAAGCTTCTCAAGGTGATCATCAATTTCATGATATGTTGGAATCT 258
||||||||||| || ||||| | | |||||||||||||| | ||||||||||||||||
Sbjct 121 GATGTTTTATCTGAGGAAGC-TAT--TGGTGATCATCAATTGCGTGATATGTTGGAATCT 177
Query 259 GCTGGTATGGTCTTAGTTCAATCCTTGCATGGAATCGGCAGGACAGTTGAGATTGTAAAT 318
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GCTGGTATGGTTTTAGTCCAATCCTTGCATGGAATCGGCAGGACAGTTGAGATTGTAAAT 237
Query 319 GAGTTAAGAGATGTGTTTGGAGAAGTTGCAGCTATTCCTGTTCAAGTTCTTCTTACTGGA 378
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 238 GAGTTAAGAGATGTGTTTGGTGAAGTTGCAGCTATTCCTGTTCAAGTTCTTCTCACTGGA 297
Query 379 GTATGCCTTCAAATATCAAATGGTTCCTATTTGGGTGTACGTGATATTCTGGAAGAGTTC 438
|||||||||||||||||| ||||||||| | |||||||||||| |||||||||||||||
Sbjct 298 ATATGCCTTCAAATATCAAGTGGTTCCTACTCGGGTGTACGTGAGATTCTGGAAGAGTTC 357
Query 439 TTTAGAATATGGGTTTACAAGGACAACCACTATATCCTAAATGATGCTGGAGTAAGTACA 498
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 358 TTTAGCATATGGGTTTACAAGGACAACCACTATATCCTAAATGATGCTGGAGTAAGTGCA 417
Query 499 AAAGGATTCCATGCGAAAAACTGTTTAGATATTGATGAGTACATGGAAGTCGTTGAGCTG 558
||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 418 AAAGGATTCCATGAGAAAAACTGTTTAGATATTGATGAGTACATGGAAGTTGTGGAGCTG 477
Query 559 TATACTTTTGGAGTTCTTGCAAAATTTTCAAATGACATGGGCCTAGCCATTTCATGGGTT 618
||||| |||||||||||||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct 478 TATACCTTTGGAGTTCTTGCAAAAGTTTCAAACGACATAGGCCTAGCCATTTCATGGGTT 537
Query 619 GAAAAAGCTGCATTGCCTGAGGAAAGGCGACAGGGGATTTTGAGAAGATTGCATTCCTTA 678
|| |||||||| || ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 538 GAGAAAGCTGCGTTACCTGAGGAAAGACGACAGGGGATTTTGAGAAGATTGCATTTGTTA 597
Query 679 CTTTCTCTCAAAACAGCTA--GTTC-------T--TT--T--GAGGAAAATTCCAAAG-A 722
||||||||||||||||| | |||| | || | ||||||||| || ||| |
Sbjct 598 CTTTCTCTCAAAACAGCAAACGTTCCAGACGCTAGTTCGTTTGAGGAAAAT-CCTAAGGA 656
Query 723 TTCTTCTTATGCTGTAGTGAATAACAAGAAGTCGTTGGGTAATGAAAAGAATGATGAGAT 782
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 657 TTCTTGTTATGCTGTAGTGAATAACAAGAAGTCGTTGGCTAATGAAAAGAATGATGAGAT 716
Query 783 TGATTCTTTCCTGAAACTATCTAAACAGCATGAACCTTGGTCACTTTGGTCATCCCATCC 842
||||| | |||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 717 TGATTATGTCCTGAAACTCTCTAAACAACATGAACCTTGGTCACTTTGGTCATCCCATCC 776
Query 843 TCTAAGCCTCAAGGTTGGTAATACCCAATTTAGCATGTCCAGGGGAAAGGTTGCCGTAAG 902
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 777 TCTAAGCCTCAAGGTTGGTAATACCCAATTTAGCATGTCCAGGGGAAAGTTTGCCATAAG 836
Query 903 CCTTGTTGGATTAATCATATGTTATGCTTTGAAGAGAAAACGAGCTGCTTTGATAAGGAT 962
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 837 CCTTGTTGGATTAATCATATGTTATGCCTTGAAGAGAAAACGAGCTGCTTTGATACGGAT 896
Query 963 CATTCGCAGGCAAATGGAGTCCACGAGAAAAGCAATAGTAGATTTCTGGAAGCTTGCGTT 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 897 CATTCGCAGGCAAATGGAGTCCACGAGAAAAGCAATAGTAGATTTCTGGAAGCTTGCATT 956
Query 1023 TTCATACCAAGTGAATCCTCTTGCAGCAATTCAATCCATACCAAGCACCACAACATGA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TTCATACCAAGTGAATCCTCTTGCAGCAATTCAATCCATACCAAGCACCACAACATGA 1014
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47768015001
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5