BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G10572.1 Length=1278 Score E Sequences producing significant alignments: (Bits) Value Ahg478393 jgi|Araly1|478393|fgenesh2_kg.3__1094__AT3G10572.1 1709 0.0 Ahg906144 jgi|Araly1|906144|Al_scaffold_0003_3272 1480 0.0 > Ahg478393 jgi|Araly1|478393|fgenesh2_kg.3__1094__AT3G10572.1 Length=1193 Score = 1709 bits (925), Expect = 0.0 Identities = 1117/1206 (93%), Gaps = 28/1206 (2%) Strand=Plus/Plus Query 76 ACAATGGAGGCAACTGATATTTGGGGAGAAATTGAACGTTCTGAGAGTTACCTAGTGTGC 135 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 ACAATGGATGCAACTGATATTTGGGGAGAAATAGAACGTTCTGAGAGTTACCTAGTGTGC 60 Query 136 TCTATGTATGAAGAGGCAGAGTCATTATCTTCCTCTATACTGAAAAGAATATTTGGCAAC 195 ||||||||||||||||||||||||||||| || |||| |||||||| ||||||||||||| Sbjct 61 TCTATGTATGAAGAGGCAGAGTCATTATCCTCTTCTACACTGAAAATAATATTTGGCAAC 120 Query 196 ATTGATGTTTTATCCGACGAAGCTTCTCAAGGTGATCATCAATTTCATGATATGTTGGAA 255 ||||||||| ||| | || || || || ||||| ||||||||||| || ||| Sbjct 121 ATTGATGTTCTAT-C--CG-AG--------GGAGAACATCAGTTTCATGATATTTTAGAA 168 Query 256 TCTGCTGGTATGGTCTTAGTTCAATCCTTGCATGGAATCGGCAGGACAGTTGAGATTGTA 315 |||||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 169 TCTGCTGGCATGGTTTTAGTCCAATCCTTGCATGGAATCAGCAGGACAGTTGAGATTGTG 228 Query 316 AATGAGTTAAGAGATGTGTTTGGAGAAGTTGCAGCTATTCCTGTTCAAGTTCTTCTTACT 375 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| Sbjct 229 AATGAGTTAAGAGATGCGTTTGGAGAAGTTGCAGCTATTCCTGTTCAAGTTCTTCTCACT 288 Query 376 GGAGTATGCCTTCAAATATCAAATGGTTCCTATTTGGGTGTACGTGATATTCTGGAAGAG 435 ||| |||||||||||||||||||||||||||| | ||||||| |||| |||||||||||| Sbjct 289 GGAATATGCCTTCAAATATCAAATGGTTCCTACTCGGGTGTATGTGAGATTCTGGAAGAG 348 Query 436 TTCTTTAGAATATGGGTTTACAAGGACAACCACTATATCCTAAATGATGCTGGAGTAAGT 495 |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 349 TTCTTTAGCATATGGGTTTACAAGGACAGCCACTATATCCTAAATGATGCTGGAGTAAGT 408 Query 496 ACAAAAGGATTCCATGCGAAAAACTGTTTAGATATTGATGAGTACATGGAAGTCGTTGAG 555 ||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||| Sbjct 409 GCAAAAGGATTCCATGAGAAAAACTGTTTAGATATTGATGAGTACATGGAAGTAGTGGAG 468 Query 556 CTGTATACTTTTGGAGTTCTTGCAAAATTTTCAAATGACATGGGCCTAGCCATTTCATGG 615 |||||||| |||||||||||||||||| ||||||| ||||| |||||||||||||||||| Sbjct 469 CTGTATACCTTTGGAGTTCTTGCAAAAGTTTCAAACGACATAGGCCTAGCCATTTCATGG 528 Query 616 GTTGAAAAAGCTGCATTGCCTGAGGAAAGGCGACAGGGGATTTTGAGAAGATTGCATTCC 675 ||||| |||||||| || ||||||||||| |||||||||||||||||||| |||||||| Sbjct 529 GTTGAGAAAGCTGCGTTACCTGAGGAAAGACGACAGGGGATTTTGAGAAGCTTGCATTCG 588 Query 676 TTACTTTC--TC---TCA--AAA-----C--A-GCTAGTTCTTTTGAGGAAAATTCCAAA 720 |||||||| || || ||| | | ||||||||||||||||||||||| ||| Sbjct 589 TTACTTTCATTCAAAACAGCAAACGTTCCAGACGCTAGTTCTTTTGAGGAAAATTCTAAA 648 Query 721 GATTCTTCTTATGCTGTAGTGAATAACAAGAAGTCGTTGGGTAATGAAAAGAATGATGAG 780 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| || Sbjct 649 GATTCTTCTTATGCTGTAGTGAATAACAAGAAGTCGTTGGCCAATGAAAAGAAGGATAAG 708 Query 781 ATTGATTCTTTCCTGAAACTATCTAAACAGCATGAACCTTGGTCACTTTGGTCATCCCAT 840 ||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 709 ATTGATTCTGTCCTGAAACTCTCTAAACAACATGAACCTTGGTCACTTTGGTCATCCCAT 768 Query 841 CCTCTAAGCCTCAAGGTTGGTAATACCCAATTTAGCATGTCCAGGGGAAAGGTTGCCGTA 900 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 769 CCTCTAAGCCTCAAGGTTGGTAATACCCAATTTAGCATGTCCAGGGGAAAGTTTGCCATA 828 Query 901 AGCCTTGTTGGATTAATCATATGTTATGCTTTGAAGAGAAAACGAGCTGCTTTGATAAGG 960 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 829 AGCCTTGTTGGATTAATCATATGTTATGCCTTGAAGAGAAAACGAGCTGCTTTGATACGG 888 Query 961 ATCATTCGCAGGCAAATGGAGTCCACGAGAAAAGCAATAGTAGATTTCTGGAAGCTTGCG 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 889 ATCATTCGCAGGCAAATGGAGTCCACGAGAAAAGCAATAGTAGATTTCTGGAAGCTTGCG 948 Query 1021 TTTTCATACCAAGTGAATCCTCTTGCAGCAATTCAATCCATACCAAGCACCACAACATGA 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 949 TTTTCATACCAAGTGAATCCTCTTGCAGCAATTCAATCCATACCAAGCACCACAACATGA 1008 Query 1081 AGATGGATCAAAATTTGGCATTGAAAATGCCTATGTAATACCAAACCAACACTCAAATAT 1140 |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1009 AGATGGATCAAA-TTTGGTATTGAAAATGCCTATGTAATACCAAACCAACACTCAAATAT 1067 Query 1141 TTTCATAATTGGTTCTATTCAAAGTTCAAACTTAGTTTTCCCAAACTTCTCCACTTATAT 1200 ||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 1068 TTTTATAATTGGTTCTATTCAAAGTTCAAACTTACTTTTCCCAAACTCCTCCACTTATAT 1127 Query 1201 CAAACTGTAATCACTGAACATGATTAAGAACCCGTTGCATATTATGTTTTATCTATATTT 1260 ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| Sbjct 1128 CAAACTGTAATCACTGAACATGATTAAGAACCCATTGCATATTCTGTTTTATCTACCTTT 1187 Query 1261 CTCCTT 1266 |||||| Sbjct 1188 CTCCTT 1193 > Ahg906144 jgi|Araly1|906144|Al_scaffold_0003_3272 Length=1014 Score = 1480 bits (801), Expect = 0.0 Identities = 949/1018 (93%), Gaps = 20/1018 (2%) Strand=Plus/Plus Query 79 ATGGAGGCAACTGATATTTGGGGAGAAATTGAACGTTCTGAGAGTTACCTAGTGTGCTCT 138 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 ATGGAGGCAACTGATATTTGGGGAGAAATCGAACGTTCTGAGAGTTACCTAGTGTGCTCT 60 Query 139 ATGTATGAAGAGGCAGAGTCATTATCTTCCTCTATACTGAAAAGAATATTTGGCAACATT 198 || ||||||||||||||||||||||| || |||||||| |||||||||||||| |||||| Sbjct 61 ATCTATGAAGAGGCAGAGTCATTATCCTCTTCTATACTTAAAAGAATATTTGGAAACATT 120 Query 199 GATGTTTTATCCGACGAAGCTTCTCAAGGTGATCATCAATTTCATGATATGTTGGAATCT 258 ||||||||||| || ||||| | | |||||||||||||| | |||||||||||||||| Sbjct 121 GATGTTTTATCTGAGGAAGC-TAT--TGGTGATCATCAATTGCGTGATATGTTGGAATCT 177 Query 259 GCTGGTATGGTCTTAGTTCAATCCTTGCATGGAATCGGCAGGACAGTTGAGATTGTAAAT 318 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 178 GCTGGTATGGTTTTAGTCCAATCCTTGCATGGAATCGGCAGGACAGTTGAGATTGTAAAT 237 Query 319 GAGTTAAGAGATGTGTTTGGAGAAGTTGCAGCTATTCCTGTTCAAGTTCTTCTTACTGGA 378 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 238 GAGTTAAGAGATGTGTTTGGTGAAGTTGCAGCTATTCCTGTTCAAGTTCTTCTCACTGGA 297 Query 379 GTATGCCTTCAAATATCAAATGGTTCCTATTTGGGTGTACGTGATATTCTGGAAGAGTTC 438 |||||||||||||||||| ||||||||| | |||||||||||| ||||||||||||||| Sbjct 298 ATATGCCTTCAAATATCAAGTGGTTCCTACTCGGGTGTACGTGAGATTCTGGAAGAGTTC 357 Query 439 TTTAGAATATGGGTTTACAAGGACAACCACTATATCCTAAATGATGCTGGAGTAAGTACA 498 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 358 TTTAGCATATGGGTTTACAAGGACAACCACTATATCCTAAATGATGCTGGAGTAAGTGCA 417 Query 499 AAAGGATTCCATGCGAAAAACTGTTTAGATATTGATGAGTACATGGAAGTCGTTGAGCTG 558 ||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| Sbjct 418 AAAGGATTCCATGAGAAAAACTGTTTAGATATTGATGAGTACATGGAAGTTGTGGAGCTG 477 Query 559 TATACTTTTGGAGTTCTTGCAAAATTTTCAAATGACATGGGCCTAGCCATTTCATGGGTT 618 ||||| |||||||||||||||||| ||||||| ||||| ||||||||||||||||||||| Sbjct 478 TATACCTTTGGAGTTCTTGCAAAAGTTTCAAACGACATAGGCCTAGCCATTTCATGGGTT 537 Query 619 GAAAAAGCTGCATTGCCTGAGGAAAGGCGACAGGGGATTTTGAGAAGATTGCATTCCTTA 678 || |||||||| || ||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 538 GAGAAAGCTGCGTTACCTGAGGAAAGACGACAGGGGATTTTGAGAAGATTGCATTTGTTA 597 Query 679 CTTTCTCTCAAAACAGCTA--GTTC-------T--TT--T--GAGGAAAATTCCAAAG-A 722 ||||||||||||||||| | |||| | || | ||||||||| || ||| | Sbjct 598 CTTTCTCTCAAAACAGCAAACGTTCCAGACGCTAGTTCGTTTGAGGAAAAT-CCTAAGGA 656 Query 723 TTCTTCTTATGCTGTAGTGAATAACAAGAAGTCGTTGGGTAATGAAAAGAATGATGAGAT 782 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 657 TTCTTGTTATGCTGTAGTGAATAACAAGAAGTCGTTGGCTAATGAAAAGAATGATGAGAT 716 Query 783 TGATTCTTTCCTGAAACTATCTAAACAGCATGAACCTTGGTCACTTTGGTCATCCCATCC 842 ||||| | |||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 717 TGATTATGTCCTGAAACTCTCTAAACAACATGAACCTTGGTCACTTTGGTCATCCCATCC 776 Query 843 TCTAAGCCTCAAGGTTGGTAATACCCAATTTAGCATGTCCAGGGGAAAGGTTGCCGTAAG 902 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 777 TCTAAGCCTCAAGGTTGGTAATACCCAATTTAGCATGTCCAGGGGAAAGTTTGCCATAAG 836 Query 903 CCTTGTTGGATTAATCATATGTTATGCTTTGAAGAGAAAACGAGCTGCTTTGATAAGGAT 962 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| Sbjct 837 CCTTGTTGGATTAATCATATGTTATGCCTTGAAGAGAAAACGAGCTGCTTTGATACGGAT 896 Query 963 CATTCGCAGGCAAATGGAGTCCACGAGAAAAGCAATAGTAGATTTCTGGAAGCTTGCGTT 1022 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 897 CATTCGCAGGCAAATGGAGTCCACGAGAAAAGCAATAGTAGATTTCTGGAAGCTTGCATT 956 Query 1023 TTCATACCAAGTGAATCCTCTTGCAGCAATTCAATCCATACCAAGCACCACAACATGA 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 957 TTCATACCAAGTGAATCCTCTTGCAGCAATTCAATCCATACCAAGCACCACAACATGA 1014 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47768015001 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5