BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G10575.1

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928751 jgi|Araly1|928751|scaffold_301208.1                        305    2e-82
  Ahg928759 jgi|Araly1|928759|scaffold_301216.1                        187    6e-47


> Ahg928751 jgi|Araly1|928751|scaffold_301208.1
Length=1501

 Score =  305 bits (165),  Expect = 2e-82
 Identities = 177/183 (97%), Gaps = 0/183 (0%)
 Strand=Plus/Plus

Query  313  AGGTTGTTAGGGCGAAGAAGAAGGATAATGGAACTGTGTATGCCTTAAAGATCATGGACA  372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  193  AGGTTGTTAGGGCGAAGAAGAAGGATAATGGAACTGTGTATGCCTTAAAGATCATGGACA  252

Query  373  AAAAGTTTATCACCAAAGAGAATAAAACCGCTTATGTCAAATTGGAGAGGATTGTTCTTG  432
            |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct  253  AAAAGTTTATCACCAAGGAGAATAAAACTGCTTATGTCAAATTGGAGAGGATTGTTCTTG  312

Query  433  ATCAACTCGAACATCCCGAGATTGTGAAACTGTTCTTTACTTTTCAAGACACGCAATCAC  492
            |||||||||||||||||| |||||||||||| ||||||||||||||||| || |||||||
Sbjct  313  ATCAACTCGAACATCCCGGGATTGTGAAACTCTTCTTTACTTTTCAAGATACACAATCAC  372

Query  493  TAT  495
            |||
Sbjct  373  TAT  375


 Score =  252 bits (136),  Expect = 2e-66
 Identities = 146/151 (97%), Gaps = 0/151 (0%)
 Strand=Plus/Plus

Query  52   GATTCAAAGCTTACACTTCAAGGGAATTCATCTTCTAATGGTGAAACTATTTACAGAAGC  111
            |||||||||||| | |||||||||||||||||||||||||||| |||||||| |||||||
Sbjct  45   GATTCAAAGCTTGCTCTTCAAGGGAATTCATCTTCTAATGGTGCAACTATTTCCAGAAGC  104

Query  112  AAAAGCTTCGCCTTTAAGGCTCCTCAGGAGAATTTCACTTACCATGATTTCGAGCTCGGC  171
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  105  AAAAGCTTCGCCTTTAAGGCTCCTCAGGAGAATTTCACCTACCATGATTTCGAGCTCGGC  164

Query  172  AAGATCTATGGCGTTGGCTCTTATTCAAAGG  202
            |||||||||||||||||||||||||||||||
Sbjct  165  AAGATCTATGGCGTTGGCTCTTATTCAAAGG  195


> Ahg928759 jgi|Araly1|928759|scaffold_301216.1
Length=272

 Score =  187 bits (101),  Expect = 6e-47
 Identities = 143/161 (89%), Gaps = 12/161 (7%)
 Strand=Plus/Plus

Query  354  GCCTTAAAGATCATGGACAAAAAGTTTATCACCAAAGAGAATAAAACCGCTTATGTCAAA  413
            ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct  114  GCCTTTAAGATCATGGACAAAAAGTTTATCACCAAGGAGAATAAAACAGCTTATGTCAAA  173

Query  414  TTGGAGAGGATTGTTCTTGATCAACTCGAACATCCCGAGATTGTGAAACTGTTCTTTACT  473
            ||||||||||||||||||||||  | ||        | |||||||||||| |||||||||
Sbjct  174  TTGGAGAGGATTGTTCTTGATC--C-CG--------G-GATTGTGAAACTCTTCTTTACT  221

Query  474  TTTCAAGACACGCAATCACTATGTAGGTAGTTTCTATTCAA  514
            |||||||| || |||||||||||||||||||||||||||||
Sbjct  222  TTTCAAGATACACAATCACTATGTAGGTAGTTTCTATTCAA  262



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19230416856


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5