BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10580.1
Length=899
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341194 jgi|Araly1|341194|fgenesh1_pg.C_scaffold_3000957 998 0.0
Ahg352012 jgi|Araly1|352012|fgenesh1_pg.C_scaffold_6002605 403 1e-111
> Ahg341194 jgi|Araly1|341194|fgenesh1_pg.C_scaffold_3000957
Length=858
Score = 998 bits (540), Expect = 0.0
Identities = 758/861 (88%), Gaps = 23/861 (3%)
Strand=Plus/Plus
Query 4 ATGGATGCAGCAATTCCGATTTGGAAGAGGGACGATGATAAGCGTTTTGAGTTAGCTCTG 63
||||||| | ||||||| |||||| ||||| |||||| ||||||||||||| |||||||
Sbjct 1 ATGGATG-A--AATTCCGCTTTGGACGAGGGTCGATGACAAGCGTTTTGAGTCAGCTCTG 57
Query 64 GTTCGATTCCCTGCTGAGGGTTCGCCGGATTTTTTAGAGAATATCGCTCAGTTTCTGCAG 123
|||| ||| || | |||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 58 GTTCAATT-CC--CAGAGGGTTCGCCGTATTTTTTGGAGAATATCGCTCAGTTTCTGCAG 114
Query 124 AAACCGTTAAAGGAGGTGTACTCCTACTACCAAGCCTTGGTCGATGATGTTACGCTGATC 183
|||||||| ||||| ||| | | |||||||||||| |||||||| |||||| ||||||||
Sbjct 115 AAACCGTTGAAGGATGTGAAGTACTACTACCAAGCGTTGGTCGACGATGTTGCGCTGATC 174
Query 184 GAATCGGGTAAGTATCCTTTGCCCAAGTACCCGGAAGATGATTACGTGTCACTGCCGGAA 243
||||||||||| | | |||||||||| ||| ||| |||||||||||||||||| ||||
Sbjct 175 GAATCGGGTAATTTTGCTTTGCCCAACTACAGGGACGATGATTACGTGTCACTGAAGGAA 234
Query 244 GCGACTAAGTCTAAAACCCAGGGCACGGGGAAAAAGAAGGGAATACCTTGGTCACCAGAA 303
||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 235 GCGACTAAGTCCAAAAACCAGGGCACGGGGAAAAAGAAGGGAATAGCTTGGTCACCA-AA 293
Query 304 -GAACACAGATTGTTTTTGGATGGACTAAACAAGTATGGGAAAGGAGATTGGAAGAGCAT 362
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CGAACACAAATTGTTTTTGGATGGACTAAACAAGTATGGGAAAGGAGATTGGAAGAGCAT 353
Query 363 ATCGAGGGAATGTGTGACGTCAAGGAGCCCGATGCAAGTGGCAAGCCATGCTCAGAAGTA 422
| ||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct 354 AGCGAGGGAATGTGTGAAGACAAGGAGCCCGATGCAAGTGGCTAGCCATGCTCAGAAGTA 413
Query 423 TTTCTTAAGGCaaaaaaaTAAGAAGGGGAAACGCTTCAGTATCCATGATATGACTCTGGG 482
||| |||||| ||||| | | ||||||||||||| | ||||||||||| ||| |||||||
Sbjct 414 TTTTTTAAGG-AAAAACA-A-GAAGGGGAAACGCATGAGTATCCATGACATGCCTCTGGG 470
Query 483 AGATGCCGAAAATGTAACCGTCCCTGTATCCAACTTGAATTCTATGGGCCAGCAGCCACA 542
|||||| || ||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 471 AGATGCGGACAATGTAACCGTCCCTGTATCCCACTTGAATTCTACGGGCCAGCAGCCACA 530
Query 543 TTTTG-ATGACCAAAGTCCTCCGGATCATTATCAAGACTACTTCTCCCAG-AGCAATGTA 600
|||| | ||||||| || ||||||||||||| | | ||| ||||||| | |||||||
Sbjct 531 GTTTGGA-GACCAAATTCTTCCGGATCATTATTAC--C-ACTGCTCCCAGGA-CAATGTA 585
Query 601 ACCA-T--CCCTGGATGCAACATGCACTTTATGGGCCAGCAACCACGTTTTGGTGACCAA 657
|||| | |||||||| |||| || ||||||||||| ||||||| |||||||| ||||
Sbjct 586 ACCAATATCCCTGGATCCAACTTGGTGTTTATGGGCCAACAACCACATTTTGGTGGCCAA 645
Query 658 ATTCCTCCGGGTGAATA-TCACCCCTACTCCCGGGACAATGTAACCGTCACTGGATCCAA 716
|||||||| | || | ||||||||||||||||||||||||||||||| ||| ||| ||
Sbjct 646 ATTCCTCCAAATCAA-AGTCACCCCTACTCCCGGGACAATGTAACCGTCCCTGAATCTAA 704
Query 717 CTTGAATTCTATTGGCCAGCAGCCACATTTTAATGACCAAATTTCTCCGGATCAATATGG 776
|||||| |||| ||| |||||||||||||| |||||| |||||||||||||||||||
Sbjct 705 CTTGAAGCCTATGGGCGAGCAGCCACATTTTGGTGACCACATTTCTCCGGATCAATATGA 764
Query 777 CCGCTACTTGCAGGAAAACTTCGGGTTTTTCGATGATGATGGTGAAGATGATGGGAGTTT 836
|||| |||| | ||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 765 CCGCGACTTCCTGGACAACTTCGGGTTTTTCTATGATGATGGTGAAGATGATGGGAGTTT 824
Query 837 AGCAAGCTTTCAACAACTATA 857
|||||||||| || |||||||
Sbjct 825 AGCAAGCTTTGAAAAACTATA 845
> Ahg352012 jgi|Araly1|352012|fgenesh1_pg.C_scaffold_6002605
Length=600
Score = 403 bits (218), Expect = 1e-111
Identities = 445/549 (81%), Gaps = 37/549 (7%)
Strand=Plus/Plus
Query 25 TGGAAGAGGGACGATGATAAGCG-TTTTGAGTTAGCTCTGGTTCGATTCCCTGCTGAGGG 83
|||| ||||| |||||| ||| | |||||||| |||||||||| |||||| | |||||
Sbjct 19 TGGACGAGGGCCGATGACAAG-GATTTTGAGTCAGCTCTGGTTATATTCCC-G--GAGGG 74
Query 84 TTCGCCGGATTTTTTAGAGAATATCGCTCAGTTTCTGCAGAAACCGTTAAAGGAGGTGTA 143
||||||| |||||||||||||||||||||| |||| ||||| || | | |||||| |
Sbjct 75 TTCGCCGTATTTTTTAGAGAATATCGCTCAAACTCTGAAGAAAACGGTGGACGAGGTG-A 133
Query 144 CT--CCTACTACCAAGC-C-TTGGTCGATGATGTT-ACGCTGATCGAATCGGGTAAGTAT 198
| || |||| ||| | | |||||| | |||||| | ||||||||||||||||||| |
Sbjct 134 ATAACC-ACTA-CAA-CACGTTGGTCCACGATGTTGA-TCTGATCGAATCGGGTAAGTTT 189
Query 199 CCTTTGCCCAAGTACCCGGAAGATGATTACGTGTCACTGCCGGAAGCGACTAAGTCTA-A 257
||||||||| |||||||| || ||||||||| ||||| ||||||| | | ||| | |
Sbjct 190 GTTTTGCCCAAATACCCGGACGACGATTACGTGACACTGACGGAAGCAAGTCCGTCCAGA 249
Query 258 AACCCAGGGCACGGGGAAAAAGAAGGGAATACCTTGGTCACCAGAA-GAACACAGATTGT 316
|| | ||||||| ||||||||||| ||||| || |||||| || || |||||||| ||||
Sbjct 250 AA-CAAGGGCACTGGGAAAAAGAATGGAATTCCATGGTCA-CAAAATGAACACAGGTTGT 307
Query 317 TTTTGGATGGACTAAACAAGTATGGGAAAGGAGATTGGAAGAGCATATCGAGGGAATGTG 376
|| |||| |||||||| |||| |||||||||||| ||||||| |||||||||| | ||||
Sbjct 308 TTCTGGAAGGACTAAATAAGTTTGGGAAAGGAGACTGGAAGAACATATCGAGGCATTGTG 367
Query 377 TGACGTCAAGGAGC-CCGATGCAAGTGGCAAGCCATGCTCAGAAGTATTTCT-TAAGGCa 434
||| |||||||| | ||| ||||||||||||||||||||||||||||||| || |||
Sbjct 368 TGAAGTCAAGGA-CATCGACGCAAGTGGCAAGCCATGCTCAGAAGTATTTCAATA-GGCT 425
Query 435 aaaaa-----aTAA-GAAGGGGAAACGCTTC-AGTATCCATGATATGACTCTGGGAGATG 487
|||| || | | | |||||||||| | ||||||||||| ||||||||||||||||
Sbjct 426 AAAACGGGGGATTACGGATGGGAAACGCT-CGAGTATCCATGACATGACTCTGGGAGATG 484
Query 488 CCGAAAATGTAACCGTCCCTGTATCCAACTTGAATTCTATGGGCCAGCAGCCACATTTTG 547
|||||||| || | | ||||||||||| | ||||| |||||||||||||||||
Sbjct 485 TGGAAAATGT--CC--CAG-G-ATCCAACTTGACGTGTATGGACCAGCAGCCACATTTTG 538
Query 548 ATGACCAAA 556
||||||||
Sbjct 539 GTGACCAAA 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33319429458
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5