BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G10585.1

Length=656
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg317859 jgi|Araly1|317859|fgenesh1_pm.C_scaffold_3000875           302    3e-81


> Ahg317859 jgi|Araly1|317859|fgenesh1_pm.C_scaffold_3000875
Length=495

 Score =  302 bits (163),  Expect = 3e-81
 Identities = 231/262 (88%), Gaps = 11/262 (4%)
 Strand=Plus/Plus

Query  81   ATGGCTTTGATTCCGCCGTGGACGAGAGACAATGACAAGCGTTTTGAGTTAGCCCTGGTG  140
            ||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct  1    ATGGCTTGGATTCCGCCGTGGACGAGGGACGATGACAAGCGTTTTGAGTTAGCCCTGGTG  60

Query  141  ATATTCCCTGAGGGCTCGCCGTATTTTTTGGAGTA-CATTGC-CGAGTTTCTACAGAAAC  198
            |||||||| |||||||||||||  ||||||||| | ||| || | || |||| |||||||
Sbjct  61   ATATTCCCGGAGGGCTCGCCGTCGTTTTTGGAG-AGCATCGCTC-AGCTTCTGCAGAAAC  118

Query  199  CTTTGGAGGA-GGTGAAGTACTACTACGACGCAATATTGGTCTATGATGTTGTGCT-GAT  256
            |||||| ||  ||| |||||| ||||||||||| | | |||||| ||||||| ||| | |
Sbjct  119  CTTTGG-GGTTGGTAAAGTACCACTACGACGCA-T-T-GGTCTACGATGTTGCGCTTG-T  173

Query  257  CGAATCGGGTAAGTATGCATTACCCAAGTACCCGGAAGCCTATTACGTGTCACTGACGGA  316
            |||||||||||||||||| ||||||||||||||||| | | || ||||||||||||||||
Sbjct  174  CGAATCGGGTAAGTATGCTTTACCCAAGTACCCGGACGACGATAACGTGTCACTGACGGA  233

Query  317  AGCGACTGAGTCCAAACACGGG  338
            ||||||| ||||||||||||||
Sbjct  234  AGCGACTCAGTCCAAACACGGG  255


 Score =  147 bits (79),  Expect = 1e-34
 Identities = 103/115 (90%), Gaps = 0/115 (0%)
 Strand=Plus/Plus

Query  407  ACAAGTAGCAAGTCATGCACAAAAGTATGACAAAAGGCAAAAATTGGACAGTAAGAAGAG  466
            |||||||||||| |||||||| |||||||||||||||||||||||||||| ||| |||||
Sbjct  366  ACAAGTAGCAAGCCATGCACAGAAGTATGACAAAAGGCAAAAATTGGACATTAATAAGAG  425

Query  467  GAAACGCTGGAGTGTCCTTGACATAACTTTGGAGTCTACTAAGGGCAAGTCAGAT  521
            ||||||| ||||| ||| ||||||||| | ||||||||| | ||||||| |||||
Sbjct  426  GAAACGCAGGAGTATCCATGACATAACGTCGGAGTCTACCATGGGCAAGCCAGAT  480



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24055560627


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5