BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G10585.1 Length=656 Score E Sequences producing significant alignments: (Bits) Value Ahg317859 jgi|Araly1|317859|fgenesh1_pm.C_scaffold_3000875 302 3e-81 > Ahg317859 jgi|Araly1|317859|fgenesh1_pm.C_scaffold_3000875 Length=495 Score = 302 bits (163), Expect = 3e-81 Identities = 231/262 (88%), Gaps = 11/262 (4%) Strand=Plus/Plus Query 81 ATGGCTTTGATTCCGCCGTGGACGAGAGACAATGACAAGCGTTTTGAGTTAGCCCTGGTG 140 ||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 1 ATGGCTTGGATTCCGCCGTGGACGAGGGACGATGACAAGCGTTTTGAGTTAGCCCTGGTG 60 Query 141 ATATTCCCTGAGGGCTCGCCGTATTTTTTGGAGTA-CATTGC-CGAGTTTCTACAGAAAC 198 |||||||| ||||||||||||| ||||||||| | ||| || | || |||| ||||||| Sbjct 61 ATATTCCCGGAGGGCTCGCCGTCGTTTTTGGAG-AGCATCGCTC-AGCTTCTGCAGAAAC 118 Query 199 CTTTGGAGGA-GGTGAAGTACTACTACGACGCAATATTGGTCTATGATGTTGTGCT-GAT 256 |||||| || ||| |||||| ||||||||||| | | |||||| ||||||| ||| | | Sbjct 119 CTTTGG-GGTTGGTAAAGTACCACTACGACGCA-T-T-GGTCTACGATGTTGCGCTTG-T 173 Query 257 CGAATCGGGTAAGTATGCATTACCCAAGTACCCGGAAGCCTATTACGTGTCACTGACGGA 316 |||||||||||||||||| ||||||||||||||||| | | || |||||||||||||||| Sbjct 174 CGAATCGGGTAAGTATGCTTTACCCAAGTACCCGGACGACGATAACGTGTCACTGACGGA 233 Query 317 AGCGACTGAGTCCAAACACGGG 338 ||||||| |||||||||||||| Sbjct 234 AGCGACTCAGTCCAAACACGGG 255 Score = 147 bits (79), Expect = 1e-34 Identities = 103/115 (90%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 407 ACAAGTAGCAAGTCATGCACAAAAGTATGACAAAAGGCAAAAATTGGACAGTAAGAAGAG 466 |||||||||||| |||||||| |||||||||||||||||||||||||||| ||| ||||| Sbjct 366 ACAAGTAGCAAGCCATGCACAGAAGTATGACAAAAGGCAAAAATTGGACATTAATAAGAG 425 Query 467 GAAACGCTGGAGTGTCCTTGACATAACTTTGGAGTCTACTAAGGGCAAGTCAGAT 521 ||||||| ||||| ||| ||||||||| | ||||||||| | ||||||| ||||| Sbjct 426 GAAACGCAGGAGTATCCATGACATAACGTCGGAGTCTACCATGGGCAAGCCAGAT 480 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24055560627 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5