BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G10595.1

Length=688
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg903943 jgi|Araly1|903943|Al_scaffold_0003_1071                    518    3e-146


> Ahg903943 jgi|Araly1|903943|Al_scaffold_0003_1071
Length=618

 Score =  518 bits (280),  Expect = 3e-146
 Identities = 454/534 (85%), Gaps = 28/534 (5%)
 Strand=Plus/Plus

Query  17   ATGGCTGAAAATTCATGGACGACAGAGGAGAACGAGATGTTCAAGGATGCACTGGTGATG  76
            |||||||||| ||||||||||| |||||||||||||| ||||||| ||||||||||| ||
Sbjct  1    ATGGCTGAAACTTCATGGACGAGAGAGGAGAACGAGAAGTTCAAGAATGCACTGGTGTTG  60

Query  77   TTCACTGCCTTTTTGCTTACTCGGTTTGAGAGTGTCGCCGAGTATGTGGATAGATCGGTG  136
            ||| |||||||||||| |||||||||  ||| | |||| ||| ||||| | | |||||||
Sbjct  61   TTCTCTGCCTTTTTGCCTACTCGGTTCCAGATTATCGCGGAGAATGTGCAGAAATCGGTG  120

Query  137  GATGATGTTAAGGAGCATTACAAGGAATTGGTCAATGATCTTTTAGAGATGGGATCCAGT  196
            | ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct  121  GCTGATGTTAAGGAGCATTACAAGGAAATGGTCAATGATCTTTTAGAGAGGGGATCCAGT  180

Query  197  CGAGTAGCTTTTCCTAATGAATTGACTAAGGATATGGCTCAAAGTTCGTACCAGGCCGAG  256
            ||||| |||||||||||| |||||||| ||| |||||||||||| |||||||||||||||
Sbjct  181  CGAGTTGCTTTTCCTAATAAATTGACTGAGGCTATGGCTCAAAGATCGTACCAGGCCGAG  240

Query  257  AGAACTATATGGACCAAAGAAACACATGAATGGTTTCTGATTGGGTTAGACCGATTTGGG  316
            ||||||| ||||| ||||||||||||||||||||||||||| |||||| | || ||||||
Sbjct  241  AGAACTAAATGGAACAAAGAAACACATGAATGGTTTCTGATCGGGTTAAAGCGGTTTGGG  300

Query  317  AAAGATTGGCGTAAAATAGCCGTCTTATTGGATTGCAAGAGCCCGATCCAAGTCGAGATA  376
            |||||||||||||||||||||||||||||| ||| |||||  ||||  ||||| ||||||
Sbjct  301  AAAGATTGGCGTAAAATAGCCGTCTTATTGAATTCCAAGAATCCGAAGCAAGTGGAGATA  360

Query  377  TATGCAGAAAACT-TTTACCAGTGGCAAAGCTCAAAGAAAAATGTGAT---------TA-  425
            |||||| | |||| ||| | | |||||||||||| || ||||||||||         || 
Sbjct  361  TATGCACATAACTATTT-CAACTGGCAAAGCTCAGAGGAAAATGTGATGAAACGCCCTAG  419

Query  426  A-C----GACTTAAATGTGGC-AAGCACCGATGTGAATGTGATGAAACGGCAGGGAGCAA  479
            | |    ||| ||| |||||  ||  || || ||||||||||||||||||||| ||||||
Sbjct  420  AGCCAACGACATAACTGTGGAGAAT-ACGGAAGTGAATGTGATGAAACGGCAGAGAGCAA  478

Query  480  AT-A-A-------CACCAATGTGGACTCAACAGGCCAACAAGAGAGTCTCGTCG  524
            || | |       ||||||||||| |||||| ||||||||||||||||||||||
Sbjct  479  ATGACATGGTGGACACCAATGTGGGCTCAACGGGCCAACAAGAGAGTCTCGTCG  532



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25275493971


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5