BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10600.1
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317861 jgi|Araly1|317861|fgenesh1_pm.C_scaffold_3000877 2782 0.0
Ahg487256 jgi|Araly1|487256|fgenesh2_kg.6__390__AT5G04770.1 1399 0.0
> Ahg317861 jgi|Araly1|317861|fgenesh1_pm.C_scaffold_3000877
Length=1755
Score = 2782 bits (1506), Expect = 0.0
Identities = 1674/1757 (95%), Gaps = 4/1757 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGCCCAATACCGGAACCACGACGGAGACACCTCTTTCTCTAGCCTCCGTGTCTAC 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGAGGCCCAATACCGGAACCACGACGGAGACACCTCCTTCTCTAGCCTCCGTGTCTAC 60
Query 61 CTCAACTCTCTCTCCGACACTCCCTCCCGTTTTTCCCGCCGAGCCGTTTCCGTTTCCACC 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CTCAACTCTCTCTCCGACACTCCCTCCCGTTTTTCCCGCCGCGCCGTTTCCGTTTCCACC 120
Query 121 TCTTACGACGAGATGAGCCGCGTCCGCGCCGTCTCCGGCGAGCAGATGCGTCGTACTCTC 180
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 121 TCTTACGACGAGATGAGCCGCGTCCGCGCCGTCTCCGGCGAGCAGATGCGCCGCACTCTC 180
Query 181 CGTTGGTACGATCTCATCGGACTCGGAATCGGTGGAATGATCGGAGCCGGAGTCTTCGTC 240
||||||||||||||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct 181 CGTTGGTACGATCTCATCGGACTCGGAATTGGCGGAATGATCGGAGCCGGCGTTTTCGTC 240
Query 241 ACCACCGGCCGTGCTAGTCGTCTCTACGCTGGTCCATCAATCGTCGTCTCTTACGCAATC 300
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 241 ACCACCGGCCGTGCTAGTCGTCTCTACGCTGGTCCATCAATCGTTGTCTCCTACGCAATC 300
Query 301 GCCGGACTCTGTGCTCTACTCTCCGCCTTCTGTTACACCGAGTTCGCCGTTCACCTCCCC 360
|| ||||||| ||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 301 GCTGGACTCTCCGCTCTCCTCTCCGCCTTCTGTTACACCGAGTTCGCCGTCCACCTTCCC 360
Query 361 GTCGCCGGCGGTGCTTTCAGCTACATCCGTATCACATTCGGCGAGTTTCCGGCGTTTATA 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 GTCGCCGGCGGTGCTTTCAGCTACATCCGTATCACATTCGGCGAGTTCCCGGCGTTTATA 420
Query 421 ACCGGAGCAAATCTGATAATGGACTACGTACTGTCAAACGCCGCCGTTTCAAGAGGATTC 480
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 421 ACCGGAGCAAATCTGATAATGGACTACGTAATGTCAAACGCCGCCGTTTCAAGAGGCTTC 480
Query 481 ACCGCTTATCTCGGATCTGCATTCGGAATCTCAACATCGGAGTGGAGATTCATCGTCTCC 540
|| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 481 ACAGCTTATCTCGGATCTGCTTTCGGAATCTCAGCATCGGAGTGGAGATTCATCGTCTCC 540
Query 541 GGTCTCCCAAACGGATTCAACGAAATCGATCCCATCGCCGTTATCGTCGTCCTCGCCGTC 600
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||
Sbjct 541 GGTCTCCCAAACGGATTCAACGTAATCGATCCAATCGCCGTTATCGTCGTCCTCACCGTC 600
Query 601 ACGTTCGTCATCTGTTACAGTACGAGAGAGAGTTCGAAGGTGAATATGGTATTAACGGCG 660
|||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 ACGTTCATCATTTGTTACAGTACGAGAGAGAGTTCGAAGGTGAATATGGTTTTAACGGCG 660
Query 661 TTACACATTGCATT-TATAGTATTCGTGATCGTCATGGGTTTCTCGAAAGGAGACGTAAA 719
|||||||||||||| | ||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 661 TTACACATTGCATTCT-TAGTATTCGTGATCGTCATGGGTTTCTGGAAAGGAGACATAAA 719
Query 720 GAATTTAACCCGACCCGATAACCCGGAAAACCCATCCGGATTCTTCCCGTTTGGAGTTTC 779
|||| ||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 720 GAATCTAACCCGACCCGATAACCCGGAAAATCCATCCGGATTCTTCCCGTTCGGGGTTTC 779
Query 780 GGGTGTGTTTAACGGAGCAGCAATGGTTTATCTAAGTTACATAGGATACGACGCCGTTTC 839
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 780 GGGTGTGTTTAACGGAGCAGCAATGGTTTACCTAAGCTACATAGGATACGACGCCGTTTC 839
Query 840 GACAATGGCTGAAGAAGTAAAAGACCCAGTCAAAGACATACCAATGGGAATCTCTGGCTC 899
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 840 GACAATGGCTGAAGAAGTAAAAGACCCGGTCAAAGACATACCAATGGGAATCTCTGGCTC 899
Query 900 AGTCGCAATCGTCATTGTACTTTACTGTTTAATGGCTATCTCTATGTCAATGCTTCTCCC 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GGTCGCAATCGTCATTGTACTTTACTGTTTAATGGCTATCTCTATGTCAATGCTTCTCCC 959
Query 960 GTACGATCTGATAGATGCGGAGGCACCGTATTCGGCGGCGTTTAGTAAATCGGAAGGATG 1019
|||||||||||||||| |||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 960 GTACGATCTGATAGATCCGGAAGCACCGTACTCGGCCGCGTTTAGTAAATCGGAAGGATG 1019
Query 1020 GGAATGGGTGACGAGAGTGGTTGGGATTGGAGCAAGTTTCGGGATATTAACGTCGTTGAT 1079
|||||||||||||| || ||| ||||| ||||||||||| |||||||||||||||||| |
Sbjct 1020 GGAATGGGTGACGAAAGCGGTAGGGATAGGAGCAAGTTTTGGGATATTAACGTCGTTGTT 1079
Query 1080 AGTAGCCATGTTGGGTCAGGCTCGGTACATGTGCGTCATCGGACGGTCAAGAGTTGTCCC 1139
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1080 AGTAGCCATGTTGGGTCAGGCTCGGTACATGTGTGTCATCGGACGGTCAAGAGTTGTCCC 1139
Query 1140 CATTTGGTTTGCTAAGGTTCATCCCAAGACATCTACTCCAGTCAACGCTTCCGCTTTTCT 1199
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CATTTGGTTCGCTAAGGTTCATCCCAAGACATCTACTCCAGTCAACGCTTCCGCTTTTCT 1199
Query 1200 TGGAATCTTCACGGCGGTTCTCGCCCTCTTCACCGACCTAAACGTCCTCCTAAACCTAGT 1259
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TGGAATCTTCACGGCGTTTCTCGCCCTCTTCACCGACCTAAACGTCCTCCTAAACCTAGT 1259
Query 1260 CTCCATCGGAACGCTCTTCGTCTTCTATATGGTCGCAAACGCTGTTATATTTCGCCGTTA 1319
||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1260 GTCCATTGGAACGCTATTCGTCTTCTACATGGTCGCAAACGCTGTTATATTTCGCCGCTA 1319
Query 1320 CGTAACGGTCGGATACACGGAGCCATGGCCAACACTCTCCTTCCTCTGCCTATTCTCCAT 1379
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TGTAGCGGTCGGATACACCAAGCCATGGCCAACACTCTCCTTCCTCTGCCTATTCTCCAT 1379
Query 1380 AACCTCAATTTTGTTTACCTTGGTCTGGCAACTTGCACCGTCG-GGCCCACCTAAATGGT 1438
|||||||||||| || ||||| |||||||||||||||||| || ||||||||||||||||
Sbjct 1380 AACCTCAATTTTCTTCACCTTAGTCTGGCAACTTGCACCG-CGAGGCCCACCTAAATGGT 1438
Query 1439 TCATACTTGGAGCTAGCACGGTCACGGCTATAGCCATCGTCCAGATATTCCATTGTGTTG 1498
||||||| ||||| ||| |||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1439 TCATACTCGGAGCCAGCGCGGTCACGGCTATAGCCATCGTTCAGATATTCCATTGTGTAG 1498
Query 1499 TACCTCAAGCTAGGATCCCTGAGTTTTGGGGTGTACCGTTGATGCCGTGGACTCCATGCG 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 TACCTCAAGCTAGGATCCCTGAGTTTTGGGGTGTACCGTTGATGCCGTGGACTCCATGCG 1558
Query 1559 TTTCGATATTTTTGAACATTTTCTTGCTTGGATCATTGGATGCTCCTTCGTATATCAGAT 1618
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TTTCAATATTTTTGAACATTTTCTTGCTTGGATCATTGGATGCTCCTTCGTATATCAGAT 1618
Query 1619 TCGGGTTCTTCTCGGGATTAGTGGTGCTCGTGTATGTGTTTTATAGTGTTCATGCAAGCT 1678
||||||||||||||||||||| || ||| | ||||||||||||||||||||||| ||||
Sbjct 1619 TCGGGTTCTTCTCGGGATTAGCAGTTCTCATATATGTGTTTTATAGTGTTCATGCGAGCT 1678
Query 1679 ATGATGCTGAAGGAGACGGGTCTCTTGATTTCAAAGACGTGGAAAGCCTTGAAAGAATTA 1738
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 1679 ATGATGCTGAAGGAGACGGGTCTCTTGATTTCAAAGATGTTGAAAGCCTTGAAAGAATCA 1738
Query 1739 ACAGAGTGTTGAGTTAA 1755
||| |||||||||||||
Sbjct 1739 ACATAGTGTTGAGTTAA 1755
> Ahg487256 jgi|Araly1|487256|fgenesh2_kg.6__390__AT5G04770.1
Length=1850
Score = 1399 bits (757), Expect = 0.0
Identities = 1421/1739 (82%), Gaps = 56/1739 (3%)
Strand=Plus/Plus
Query 37 TCTTTCTCTAGCCTCCGTGTCTACCTCAACTCTCTCTCCGAC-ACTCCCTCCCGTTTTTC 95
|||||||| || ||||| ||||||||||||||||| |||| | || || || ||||| ||
Sbjct 71 TCTTTCTCCAGTCTCCGCGTCTACCTCAACTCTCTTTCCG-CGACGCCTTCTCGTTTATC 129
Query 96 CCGCCGAGCCGTTTCCGTTTCCACCTCTTACGACGAGATGAGCCGCGTCCGCGCCGTCTC 155
|||||| || ||||||| ||||| |||| |||||||||||| | |||||||||||||||
Sbjct 130 CCGCCGCGCTATTTCCGTCTCCACTTCTTCCGACGAGATGAGTCACGTCCGCGCCGTCTC 189
Query 156 CGGCGAGCAGATGCGTCGTACTCTCCGTTGGTACGATCTCATCGGACTCGGAATCGGTGG 215
|||||| |||||||| ||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 190 CGGCGAACAGATGCGCCGTACTCTCCGATGGTACGATCTCATTGGACTCGGAATCGGCGG 249
Query 216 AATGATCGGAGCCGGAGTCTTCGTCACCACCGGCCGTGCTAGTCGTCTCTACGCTGGTCC 275
|||| |||| ||||| || || ||||||||||||||||| ||||||||| |||| |||||
Sbjct 250 AATGGTCGGCGCCGGTGTTTTTGTCACCACCGGCCGTGCCAGTCGTCTCGACGCCGGTCC 309
Query 276 ATCAATCGTCGTCTCTTACGCAATCGCCGGACTCTGTGCTCTACTCTCCGCCTTCTGTTA 335
|||||||||||||||||||| ||||| |||||||| ||||| |||||||| ||||||||
Sbjct 310 TTCAATCGTCGTCTCTTACGCCATCGCTGGACTCTGCGCTCTCCTCTCCGCTTTCTGTTA 369
Query 336 CACCGAGTTCGCCGTTCACCTCCCCGTCGCCGGCGGTGCTTTCAGCTACATCCGTATCAC 395
||| || |||||||| || ||||||||||||||||| || ||||||||||||||||||||
Sbjct 370 CACTGAATTCGCCGTACATCTCCCCGTCGCCGGCGGCGCCTTCAGCTACATCCGTATCAC 429
Query 396 ATTCGGCGAGTTTCCGGCGTT-TATAACCGGAGCAAATCTGATAATGGACTACGTACTGT 454
|||||| |||||||| || || | | |||||||| ||||| ||||||||||||||| |||
Sbjct 430 ATTCGGTGAGTTTCCTGCATTCT-TCACCGGAGCGAATCTTATAATGGACTACGTAATGT 488
Query 455 CAAACGCCGCCGTTTCAAGAGGATTCACCGCTTATCTCGGATCTGCATTCGGAATCTCAA 514
|||||||||||||||| ||| | |||||||||||| | ||| | || ||||| |||||||
Sbjct 489 CAAACGCCGCCGTTTCGAGAAGCTTCACCGCTTATTTAGGAACAGCTTTCGGGATCTCAA 548
Query 515 CATCGGAGTGGAGATTCATCGTCTCCGGTCTCCCAAACGGATTCAACGAAATCGATCCCA 574
|||| ||||| ||||| ||||||||||||| ||||| ||||||||||| |||||| |||
Sbjct 549 CATCCAAGTGGCGATTCGTCGTCTCCGGTCTACCAAAAGGATTCAACGAGATCGAT-CCA 607
Query 575 -TCGCCGTTATCGTCGTCCTCGCCGTCAC-GTTCGTCATCTGTTACAGTACGAGAGAGAG 632
|||||||| |||| ||||||| |||| | || ||||||||| |||||| ||||||||
Sbjct 608 GTCGCCGTTCTCGTAGTCCTCGTAATCACAG-TCATCATCTGTTGCAGTACAAGAGAGAG 666
Query 633 TTCGAAGGTGAATATGGTATTAACGGCGTTACACATTGCATTTATAGTATTCGTGATCGT 692
||||||||||| ||| || | || || || ||||| ||||| ||| | |||||||||||
Sbjct 667 CTCGAAGGTGAACATGATAATGACTGCATTTCACATCGCATTCATATTCTTCGTGATCGT 726
Query 693 CATGGGTTTC-TCGAAAGGAGACGT-AAAGAAT-TTAACC-CGACCCGATAACCCGGAAA 748
||||| ||| | |||||||| | ||||||| || || | ||| | || || ||
Sbjct 727 GATGGGGTTCAT-AAAAGGAGA-TTCAAAGAATCTT-TCCTC-ACCGGCGAATCCAGAGC 782
Query 749 ACCCATCCGGATTCTTCCCGTTTGGAGTTTCGGGTGTGTTT-AACGGAGCAGCAATGGTT 807
| || || || || || ||||| || | |||| || ||| |||||||| || ||||||
Sbjct 783 ATCCGTCGGGGTTTTTTCCGTTCGGCGCGGCGGGAGT-TTTCAACGGAGCTGCCATGGTT 841
Query 808 TATC-TAAGTTACATAGGATACGACGCCGTTTCGACAATGGCTGAAGAAGTA-AAAGA-C 864
|| | |||| ||||||||||||||||||||||| || ||||| || |||||| ||| | |
Sbjct 842 TA-CTTAAGCTACATAGGATACGACGCCGTTTCAACCATGGCGGAGGAAGTAGAAA-ATC 899
Query 865 CCAGTCAAAGACATACCAATGGGAATCTCTGGCTCAGTCGCAATCGTCATTGTACTTTAC 924
|| || |||||||| || | || |||| ||||| ||||||||||||| || || |||
Sbjct 900 CC-GTTAAAGACATCCCCGTCGGTGTCTCCGGCTCCGTCGCAATCGTCACCGTCCTCTAC 958
Query 925 TGTTTAATGGCTATCTCTATGTCAATGCTTCTCCCGTACGATCTGATAGATGCGGAGGCA 984
||| | ||||| |||| ||||||||||||||||| |||||| |||||||| |||||||
Sbjct 959 TGTCTCATGGCCGTCTCCATGTCAATGCTTCTCCCATACGATATGATAGATCCGGAGGCG 1018
Query 985 CCGTATTCGGCGGCGTTTAGTAA-ATCGGAA-GGATGGGAATGGGTGACGAGAGTGGTTG 1042
|||| ||| |||||||| || | |||| || || |||||||||||||||| |||||| |
Sbjct 1019 CCGTTTTCTGCGGCGTTCAG-AGGATCG-AACGGCTGGGAATGGGTGACGAAAGTGGTGG 1076
Query 1043 GGATTGGAGCAAG-TTTCGGGATATTAACGTCG-TTGATAGTAGCCATGTTGGGTCAGGC 1100
|||| |||||||| ||| ||||||||||| || || | || || ||||| ||||||||
Sbjct 1077 GGATAGGAGCAAGCTTT-GGGATATTAACATCACTTT-TGGTGGCAATGTTAGGTCAGGC 1134
Query 1101 TCGGTACATGTGCGTCATCGGACGGTCAAGAGTTGTCCCCATTTGGTTTGCTAAGGTTCA 1160
||| |||||||| |||||||||||||| ||||| |||||| ||||||| || ||| ||||
Sbjct 1135 TCGCTACATGTGTGTCATCGGACGGTCCAGAGTGGTCCCCTTTTGGTTCGCCAAGATTCA 1194
Query 1161 TCCCAAGACATCTACTCCAGTCAACGCTTCCGCTTTTCTTGGAATCTTCACGGCGGTTCT 1220
|||||| |||||||| ||||||||||| ||| |||||||||| || |||||||||| |||
Sbjct 1195 TCCCAAAACATCTACGCCAGTCAACGCCTCCACTTTTCTTGGCATTTTCACGGCGGCTCT 1254
Query 1221 CGCCCTCTTCACCGACCTAAACGTCCTCCTAAACCTAGTCTCCATCGGAACGCTCTTCGT 1280
|| || ||||||||||||||||||||||||||||| |||||||| ||||| || || ||
Sbjct 1255 TGCGCTTTTCACCGACCTAAACGTCCTCCTAAACCTCGTCTCCATTGGAACACTATTTGT 1314
Query 1281 CTTCTATATGGTCGCAAACGCTGTTATATTTC-GCCGTTACGTAACGGTCGGATACACGG 1339
|||||| ||||||||||||||| | || || | | |||||||| | |||||| |||
Sbjct 1315 CTTCTACATGGTCGCAAACGCTCTCATCTT-CAGACGTTACGTCCCCGTCGGACCCACCA 1373
Query 1340 AGCCATGGCCAACACTCTCCTTCCTCTGC-CTATTCTCCATAACCTCAATTTTGT-TT-A 1396
|||||||||| ||||||| ||||||| | ||||||||||||||||| | |||| || |
Sbjct 1374 AGCCATGGCCCACACTCTGCTTCCTCA-CACTATTCTCCATAACCTC--TCTTGTCTTCA 1430
Query 1397 CCTTGGTCTGGCAACTTGCACCGTCGGGCCCA-CCTAAATGGTT-CATACTTGGAGCTAG 1454
|| | ||||| |||||| ||| ||| | |||||| | || ||| || || || ||
Sbjct 1431 CCCTCATCTGGAAACTTGTGCCGGAAGGCA-AGCCTAAA-GCTTTCATGCTCGGTGCCAG 1488
Query 1455 CACGGTCACGGCTATAGCCATCGTCCAGATATTCCATTGTGTTGTACCTCAAGCTAGGAT 1514
| |||| ||||||||||||||| | ||| ||||| || || || || || |||||||
Sbjct 1489 CGCGGTGGTGGCTATAGCCATCGTGCTGATCTTCCAGTGCGTGGTTCCCCAGGCTAGGAA 1548
Query 1515 -CCCTGAGTTTTGGGGTGTACCGTTGATGCCGTGGACTCCATGCGTTTCGATATTT-TTG 1572
||| ||||| ||||| || || || ||||||||||| || ||||| ||||| ||| |||
Sbjct 1549 ACCC-GAGTTATGGGGAGTCCCATTCATGCCGTGGACCCCGTGCGTGTCGAT-TTTCTTG 1606
Query 1573 AACATTTTCTTGCTTGGATCATTGGATGCTCCTTCGTATATCAGATTCGGGTTCTTCTCG 1632
|||||||| |||||||| || ||||| || || || || || | || || ||||||||
Sbjct 1607 AACATTTTTTTGCTTGGTTCGTTGGACGCACCCTCTTACGTCCGTTTTGGCTTCTTCTCC 1666
Query 1633 GGATT-AGTGGTGCTCGTGTATGTGTTTTATAGTGTTCATGCAAGCTATGATGCTGAAGG 1691
|| || | || ||||||||||| || ||||| | |||||||| || | |||||||||||
Sbjct 1667 GGTTTGATTG-TGCTCGTGTATTTGCTTTATGGCGTTCATGCGAGTTCTGATGCTGAAGC 1725
Query 1692 -AGACGGGTCTCTTGATTTCAAAGACGTGGA-AAGCCTTGAAAGAATTAACAGA-GTGT 1747
| | |||||| ||| | | ||||| |||| ||| | ||||||| |||| || ||||
Sbjct 1726 CA-ATGGGTCTTTTGGTGTGAAAGA--TGGACAAGTCATGAAAGAGCTAACCGAAGTGT 1781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65858033605
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5