BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10610.1
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478395 jgi|Araly1|478395|fgenesh2_kg.3__1096__AT3G10610.1 835 0.0
> Ahg478395 jgi|Araly1|478395|fgenesh2_kg.3__1096__AT3G10610.1
Length=651
Score = 835 bits (452), Expect = 0.0
Identities = 514/544 (94%), Gaps = 3/544 (1%)
Strand=Plus/Plus
Query 4 TTCTTTGCTTTCTTCTGTA-TTTGCCGCCGCTTCTCTGCTCTCCAGCTCCGGTCAATCCG 62
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1 TTCTTTGCTTTCTTCTGTATTTTGCCGCCGCATCTCTGCTCTCCAGCTCCGGTCAATCCA 60
Query 63 TACAGGTAAGTCAAAAAGTTGTGAAAGATGGGTCGTGTTCGTACCAAAACGGTTAAGAAG 122
|||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 61 TACAGGTAAGTCCAAAAGTTGTGAAAGATGGGTCGTGTTCGTACCAAAACAGTGAAGAAG 120
Query 123 TCTTCACGTCAGGTGATTGAGAAGTACTACTCACGGATGACACTAGACTTCCACACCAAC 182
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 121 TCTTCACGTCAGGTGATTGAGAAGTACTACTCTCGGATGACTCTGGACTTCCACACCAAC 180
Query 183 AAGAAGATCTTGGAAGAAGTTGCAATCATCCCATCGAAAAGGCTACGCAACAAGATTGCT 242
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 AAGAAGATCTTACAAGAAGTTGCAATCATCCCATCTAAAAGGCTACGCAACAAGATTGCT 240
Query 243 GGATTCTCCACTCACTTGATGAAACGTATCCAAAAGGGTCCAGTCCGTGGAATCTCCCTC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGATTCTCCACTCACTTGATGAAACGTATCCAAAAGGGTCCAGTCCGTGGAATCTCCCTC 300
Query 303 AAGCTACAAGAGGAAGAGCGTGAAAGGCGAATGGACTTTGTTCCCGATGAGTCAGCCATT 362
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 301 AAGCTACAAGAGGAAGAGCGTGAAAGACGCATGGACTTTGTCCCCGATGAGTCAGCCATT 360
Query 363 AAAATCGATGATGTTAAGGTGGACAAAGAGACACTAGAGATGCTTGCTTCTTTGGGAATG 422
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 AAAACCGATGATGTTAAGGTGGACAAAGAGACGCTAGAGATGCTTGCTTCTTTGGGAATG 420
Query 423 TCTGATATT-GCTGGGATTTCTCAAGTGGAGACACAACAAGCTATGGCACCTGCTGTGTT 481
|||| || | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTGCTACTCG-TGGGATTTCTCAAGTGGAGACACAACAAGCTATGGCACCTGCTGTGTT 479
Query 482 TGGACGTCCCGCAGGAAGATACCAACGCTAAGTTTATTGGGTTTCAATCAAAGATTTCGG 541
|||||| || ||| |||||||| || ||| |||||||||||||| ||||||||| || ||
Sbjct 480 TGGACGGCCGGCAAGAAGATACTAAGGCTGAGTTTATTGGGTTTGAATCAAAGACTTAGG 539
Query 542 AGAC 545
||||
Sbjct 540 AGAC 543
Score = 76.8 bits (41), Expect = 2e-13
Identities = 53/58 (91%), Gaps = 3/58 (5%)
Strand=Plus/Plus
Query 610 GTTTCCTTTGATTT-AAGATTAATGTCTGGAATTTATAGCTTTTGCTTTG-TTTTAAC 665
|||||||||| ||| ||||||||||||||||||||| |||| |||||||| |||||||
Sbjct 558 GTTTCCTTTG-TTTCAAGATTAATGTCTGGAATTTACAGCTCTTGCTTTGTTTTTAAC 614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28782802335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5