BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10620.1
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317863 jgi|Araly1|317863|fgenesh1_pm.C_scaffold_3000879 918 0.0
Ahg920106 jgi|Araly1|920106|scaffold_101387.1 169 4e-41
> Ahg317863 jgi|Araly1|317863|fgenesh1_pm.C_scaffold_3000879
Length=669
Score = 918 bits (497), Expect = 0.0
Identities = 615/669 (92%), Gaps = 20/669 (3%)
Strand=Plus/Plus
Query 1 ATGGCACTGTACCGACCCCTTCTCTTGCATCAT---CCAACTTCTCCGTCTGTAACTACG 57
|||||| |||||||| | ||| ||||||||||| ||||| |||||| | |||| | ||
Sbjct 1 ATGGCATTGTACCGATCGCTTGTCTTGCATCATCGCCCAACATCTCCGACAGTAATTCCG 60
Query 58 TT-TCTACGAAATTACCCCTCGAAACCGATCAAATTCTCCAGCCTGCCCTTCCTTCATCG 116
|| | | |||||||||||||||||| || | |||||||| |||||||||||||| || ||
Sbjct 61 TTAT-TCCGAAATTACCCCTCGAAAGCGCTGAAATTCTCGAGCCTGCCCTTCCTCCACCG 119
Query 117 CTGCCGTAAGTCTCGGGTCTCCTCCTCCTCCGCTC-G-G-TG-------T--T-GT--TC 161
|||| ||||||||| |||||||||||||||||||| | | || | | || ||
Sbjct 120 CTGCAGTAAGTCTCAGGTCTCCTCCTCCTCCGCTCGGTGTTGTTCTTCATCGTCGTCGTC 179
Query 162 TTCCATGGAATCTCCTCCTGAAGGATACAGAAGAAATGTCGGCGTCTGCCTCATGAATTC 221
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 180 TTCCATGGAATCTCCTCCGGAAGGCTACAGAAGAAATGTCGGTGTCTGCCTCATGAACTC 239
Query 222 TTCCAAAAAGATTTTCACTGCCTCGAGGTTGGATATTCCCAGTGCTTGGCAAATGCCTCA 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTCCAAAAAGATTTTCACTGCCTCGAGGTTGGATATTCCCAGTGCTTGGCAAATGCCTCA 299
Query 282 GGGTGGAATCGACGAAGGTGAAGATCCAAGAGTTGCAGTCATGAGAGAGCTTAAAGAAGA 341
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 GGGTGGAATCGACGAGGGTGAAGATCCAAGAGTTGCAGTTATGAGAGAGCTTAAAGAAGA 359
Query 342 GACTGGAGTTCACTCTGCTGAGATTCTCGCTGAGGCACCTCACTGGATAACCTATGACTT 401
||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 360 GACTGGAGTTCACTCTGCTGAGATTGTCGCTGAGGCACCTCACTGGATAACGTACGACTT 419
Query 402 CCCTCCTGATGTTAGGGAGAAGCTTAAGGTCCGATGGGGATCCGATTGGAAGGGTCAAGC 461
||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 420 CCCCCCTGATGTTAGGGAGAAGCTCAAGGTCCGATGGGGATCTGATTGGAAGGGTCAAGC 479
Query 462 ACAGAAATGGTTTCTTCTGAAATTTACTGGGAAAGATGAAGAAATCAATCTTCTTGGCGA 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACAGAAATGGTTTCTTCTGAAATTTACTGGGAAAGATGAAGAAATCAATCTTCTTGGCGA 539
Query 522 TGGTACTGAGAAACCTGAGTTTGGTGAATGGTCCTGGACTTCTCCTGATCAAGTCGTTGA 581
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 TGGTTCTGAGAAACCTGAGTTTGGTGAATGGTCCTGGACATCTCCTGATCAAGTCGTTGA 599
Query 582 AAATGCAGTGGAGTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCTTCTCA 641
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACATGCAGTGGATTTCAAGAAGCCAGTGTACAAGGAAGTCATGTCAGCTTTCGCTTCTCA 659
Query 642 TCTCCAGTA 650
|||||||||
Sbjct 660 TCTCCAGTA 668
> Ahg920106 jgi|Araly1|920106|scaffold_101387.1
Length=247
Score = 169 bits (91), Expect = 4e-41
Identities = 101/106 (95%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 477 TCTGAAATTTACTGGGAAAGATGAAGAAATCAATCTTCTTGGCGATGGTACTGAGAAACC 536
||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1 TCTGAAATTTACTGGCAAAGATGAAGAAATCAATCTTCTTGGTGATGGAACTGAGAAACC 60
Query 537 TGAGTTTGGTGAATGGTCCTGGACTTCTCCTGATCAAGTCGTTGAA 582
|||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 61 TGAGTTTGGTCAATGGTCCTGGACTTCTCCTGATCAAGTCATTGAA 106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29926489845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5