BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10630.1
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478396 jgi|Araly1|478396|fgenesh2_kg.3__1097__AT3G10630.1 2268 0.0
Ahg920105 jgi|Araly1|920105|scaffold_101386.1 318 7e-86
Ahg317863 jgi|Araly1|317863|fgenesh1_pm.C_scaffold_3000879 117 3e-25
> Ahg478396 jgi|Araly1|478396|fgenesh2_kg.3__1097__AT3G10630.1
Length=1510
Score = 2268 bits (1228), Expect = 0.0
Identities = 1415/1505 (94%), Gaps = 14/1505 (1%)
Strand=Plus/Plus
Query 18 TCTTCATCGATGGATCAACCACCAGATCGAAGCAAGCGACCATGGAAATTCTCCACCATC 77
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1 TCTTCATCGATGGATCAACCACCAGATCGGAGCAAGCGACCATGGAAATTCTCCACCTTC 60
Query 78 GTCTACTCTTCATCGAT-CTTATTCCTTCTACTTTCGATATTCTTACTTGGCTTCACAAA 136
||||||||||||||||| ||| |||||||| |||||||||||| |||| |||||||| ||
Sbjct 61 GTCTACTCTTCATCGATCCTT-TTCCTTCTTCTTTCGATATTCGTACTCGGCTTCACTAA 119
Query 137 TACCGATCTCTACAAAGTCCAAAGTCTGAGATTCACCTTCACTGTGAACCGCTTCTATAG 196
|||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||
Sbjct 120 TACCAATCTCTACAAAGTCCAAAGTCTGAGATTCACCTTCACTGCGAACCGCATCTACAG 179
Query 197 CTATCTTCAATTCCTTCTAGGCTTTCATGATGGAACTCCCAAATCCAAATCCGAAACCCT 256
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 180 CTATCTTCAATTCCTTCTAGGCTTTCACGATGGAACTCCCAAATCCAAATCTGAAACCCT 239
Query 257 AAATCCAGCTTCTTCTACGCCGCACTGCGTGTTATGGATGGCTCCTTTTCTCTCGAGTGG 316
| | |||||||| |||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 240 AGACCCAGCTTCGTCTACGTCGCATTGCGTGTTATGGATGGCTCCTTTTCTCTCGAGTGG 299
Query 317 TGGTTACAGCTCAGAAGCTTGGTCTTACGTTTTATCACTTCGTAACCATCTCACAAACCC 376
||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 300 CGGTTATAGCTCAGAAGCTTGGTCTTACATTTTATCACTTCATAACCATCTCACAAACCC 359
Query 377 TAGATTTCGAATCACCATCGAGCACCATGGTGATCTAGAATCAGTGGAGTTTTGGAATGG 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TAGATTTCGAATCACCATCGAGCACCATGGTGATCTAGAATCAGTGGAGTTTTGGAATGG 419
Query 437 TTTAGCTAAGGAGACGAAGGAGGTAGCGATTGAAATGTATAGAGA-ACAGTGTAGACCCA 495
||||||||||||||| |||||| |||||||||||||||| ||| | ||| ||||||||||
Sbjct 420 TTTAGCTAAGGAGACTAAGGAGCTAGCGATTGAAATGTACAGA-ACACAATGTAGACCCA 478
Query 496 ATGAGACGATAGTTGTTTGTCATAGTGAGCCTGGTGCTTGGTATCCACCATTGTTTGAGA 555
| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 479 ACGAGACGATCGTTGTTTGTCATAGTGAACCTGGTGCTTGGTATCCACCATTGTTTGAGA 538
Query 556 CTCTACCTTGTCCTCCAACTGGCTACGAAGATTTCTTATCTGTGATTGGTAGAACAATGT 615
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 539 CTCTTCCTTGTCCTCCAACTGGTTACGAAGATTTCTTATCTGTGATTGGTAGAACAATGT 598
Query 616 TTGAGACTGATAGAGTCAATCCAGAGCATGTGAAGCGATGTAATCAAATGGATCATGTTT 675
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 599 TTGAGACTGATAGAGTCAATCCTGAGCATGTGAAGCGATGTAATCAGATGGATCATGTTT 658
Query 676 GGGTTCCTACTGATTTTCACGTCTCTTCGTTTGTACAAAGTGGGGTTGATTCATCTAAGG 735
||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 659 GGGTTCCTACTGAGTTTCATGTCTCTTCTTTTGTACAAAGTGGGGTTGATTCATCTAAGG 718
Query 736 TTGTCAAGATTGTGCAGCCTGTAGATGTCGGTTTCTTCGATCCTTCAAAGTATAAGCCTT 795
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 719 TTGTCAAGATTGTGCAGCCTGTAGATGTCGGTTTCTTCGATCCTTCCAAGTATAAGCCTT 778
Query 796 TGGATCTGATGGCGGTTGGGGATTTGGTTTTAGGTTCTGGGATGAAGAA--------T-G 846
||||||||||||||||||||||||||||||| |||||| | |||||||| | |
Sbjct 779 TGGATCTGATGGCGGTTGGGGATTTGGTTTTGGGTTCTAGAATGAAGAATGCGGGTTTAG 838
Query 847 GGTTTGTGTTCTTGAGTGTGTTTAAATGGGAGCAGAGGAAAGGTTGGGATGTATTGTTGA 906
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 839 GGTTTGTGTTCTTGAGTGTGTTTAAGTGGGAGCAGAGGAAAGGTTGGGATGTGTTGTTGA 898
Query 907 AAGCTTACTTGAGTGAGTTTTCTGGTGAAGACAATGTTGCTCTGTTTTTGTTGACGAACG 966
| |||||| | || ||||| |||||| |||||||||||||||||||||||||||| ||||
Sbjct 899 AGGCTTACCTCAGAGAGTTCTCTGGTAAAGACAATGTTGCTCTGTTTTTGTTGACAAACG 958
Query 967 CGTATCACTCGGACAGCGATTTCGGGAACAAGATTCTTGATTTCGTAGAAGAAATGAATA 1026
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 959 CTTATCACTCGGACAGCGATTTCGGGAACAAGATTCTTGATTTCGTAGAAGAATTGAATA 1018
Query 1027 TAGAAGAGCCTCGGAATGGTTACCCTTTTGTGTATGTGATTGATAAACACATTGCTCAAG 1086
|| |||||| ||| ||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1019 TACAAGAGCTTCGAAATGGTTACCCTTGTGTGTATGTGATTGATAAACACATAGCTCAAG 1078
Query 1087 TTGATTTACCTCGGTTGTACAAAGCGGCTGATGCGTTTGTGTTGCCTACAAGAGGAGAAG 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TTGATTTACCTCGGTTGTACAAAGCGGCTGATGCGTTTGTGTTGCCTACAAGAGGAGAAG 1138
Query 1147 GATGGGGACGACCTATAGTGGAAGCCATGGCTATGTCTTTGCCTGTGATCACAACAAACT 1206
||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1139 GATGGGGACGACCGATAGTGGAAGCCATGGCAATGTCTTTGCCTGTGATCGCAACAAACT 1198
Query 1207 GGTCAGGACCAACAGAGTATCTTACAGAGCGGAATGGTTACCCGTTGGTGGTAGAGGAGA 1266
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1199 GGTCAGGACCAACGGAGTATCTGACAGAGCGTAATGGTTACCCGTTGGTGGTAGAGGAGA 1258
Query 1267 TGAGTGAAGTGAAGGAAGGTCCTTTTGAAGGGCATCAATGGGCAGAGCCATCTGTGGATA 1326
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1259 TGAGTGAAGTGAAGGAAGGTCCTTTTGAAGGGCATCAATGGGCTGAGCCATCTGTAGATA 1318
Query 1327 AGCTGAGGGTTCTAATGAGGCGTGTAATGAGTAACCCTGATGAGGCTAAGGTTAAAGGAA 1386
|||| |||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||
Sbjct 1319 AGCTTAGGGTTCTAATGAGGCATGTGATGAGTAATCCTGATGAGGCGAAGGTTAAAGGAA 1378
Query 1387 AACGTGGAAGAGATGACATGGTCAAGAATTTTGCTCCTGAGGTTGTTGCTAAGGTTGTAG 1446
| ||||||||||| ||||||||| |||| ||||||||||||||||||||||| |||||||
Sbjct 1379 ACCGTGGAAGAGACGACATGGTCCAGAAGTTTGCTCCTGAGGTTGTTGCTAAAGTTGTAG 1438
Query 1447 CGGATCAAATAGCGAGAATCTTTGATGAGAAAATAAGAACATGACAGGA-TCTCACACTT 1505
|||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1439 CGGATCAAATAGAGAGAATCTTTGATGAGAAAATAAGAACATGACAGGAATGTCACACTT 1498
Query 1506 TACTT 1510
| |||
Sbjct 1499 TGCTT 1503
> Ahg920105 jgi|Araly1|920105|scaffold_101386.1
Length=265
Score = 318 bits (172), Expect = 7e-86
Identities = 223/248 (90%), Gaps = 2/248 (1%)
Strand=Plus/Plus
Query 1264 AGATGAGTGAAGTGAAGGAAGGTCCTTTTGAAGGGCATCAATGGGCAGAGCCATCTGTGG 1323
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 19 AGATGAGTGAAGTGAAGGAAGGTCCTTTTGAAGGGCATCAATGGGCAGAGCCATCTGTAG 78
Query 1324 ATAAGCTGAGGGTTCTAATGAGGCGTGTAATGAGTAACCCTGATGAGGCTAAGGTTAAAG 1383
||||||| |||||||||||||||| |||||||||||| ||| ||||||||||||||||||
Sbjct 79 ATAAGCTTAGGGTTCTAATGAGGCATGTAATGAGTAATCCTTATGAGGCTAAGGTTAAAG 138
Query 1384 GAAAACGTGGAAGAGATGACATGGT-CAAGAATTTTGCTCCTGAGGTTGTTGCTAAGGTT 1442
| || ||||||||||| |||||||| || ||| ||| | |||||||| ||| || || ||
Sbjct 139 GCAACCGTGGAAGAGACGACATGGTTCA-GAAGTTTACACCTGAGGTCGTTACTGAGTTT 197
Query 1443 GTAGCGGATCAAATAGCGAGAATCTTTGATGAGAAAATAAGAACATGACAGGATCTCACA 1502
|| ||| ||||||| | || ||||||||||||| ||| ||||||||||||||||||||||
Sbjct 198 GTTGCGAATCAAATTGAGATAATCTTTGATGAGCAAAGAAGAACATGACAGGATCTCACA 257
Query 1503 CTTTACTT 1510
|||| |||
Sbjct 258 CTTTGCTT 265
> Ahg317863 jgi|Araly1|317863|fgenesh1_pm.C_scaffold_3000879
Length=669
Score = 117 bits (63), Expect = 3e-25
Identities = 67/69 (97%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 1648 TACTGGAGATGAGAAGCGAAAGCTGACATGACTTCCTTGTACACTGGCTTCTTGAACTCC 1707
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 668 TACTGGAGATGAGAAGCGAAAGCTGACATGACTTCCTTGTACACTGGCTTCTTGAAATCC 609
Query 1708 ACTGCCTGT 1716
||||| |||
Sbjct 608 ACTGCATGT 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65629492135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5