BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10640.1
Length=1033
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478398 jgi|Araly1|478398|fgenesh2_kg.3__1099__AT3G10640.1 1555 0.0
Ahg325121 jgi|Araly1|325121|fgenesh1_pm.C_scaffold_6000341 754 0.0
> Ahg478398 jgi|Araly1|478398|fgenesh2_kg.3__1099__AT3G10640.1
Length=1008
Score = 1555 bits (842), Expect = 0.0
Identities = 956/1010 (95%), Gaps = 12/1010 (1%)
Strand=Plus/Plus
Query 32 CCTTCTTCTCCAAAGTCTCGATTTCTCTTTATTCTTCCAAATTCTTTTGTCTCTCTGTAT 91
|||| ||||||||| ||||||||||||||| |||||||||| |||||||||||||||| |
Sbjct 1 CCTTGTTCTCCAAATTCTCGATTTCTCTTTCTTCTTCCAAAGTCTTTTGTCTCTCTGTCT 60
Query 92 CATCCAAAATTCCCAGATTTATTCACGGAGTT---AGAAGAAGAAGATGAGGAGAGTTTT 148
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 61 CATCCAAAATTCCCAGATTTCTTCACGGAGTTAGAAGAAGAAGAAGATGAGGAGAGTTTT 120
Query 149 CGGCGCGAAAAAGAACACAGAGCCTCCTCCGTCCATTCAGGATGCCTCTGATCGGATAAA 208
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGGCGCGAAGAAGAACACAGAGCCTCCTCCGTCCATTCAGGATGCCTCTGATCGGATAAA 180
Query 209 TAAAAGAGGAGATTCGGTAGAAGATAAGATAAAGAAGCTTGATGTTGAGCTCTGCAAATA 268
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 TAAAAGAGGAGATTCGGTAGAAGATAAGATAAAGAAGCTTGATGTTGAGCTCTTCAAATA 240
Query 269 CAAAGAACAGCTCAAAAAGACCAGACCTGGTCCTGCTCAAGAAGCTGTCAAAGCTCGTGC 328
||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 TAAAGAACAGCTTAAAAAGACAAGACCTGGTCCTGCTCAAGAAGCTGTCAAAGCTCGTGC 300
Query 329 TATGCGAGTTCTCAAGCAGAAGAAAATGTATGAAGGACAACGCGACATGCTCTATAATCA 388
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TATGAGAGTTCTCAAGCAGAAGAAAATGTATGAAGGACAACGCGACATGCTCTATAATCA 360
Query 389 GACATTCAATCTCGATCAAGTTTCATTCGCCGCTGAAGGACTCAAAGATGCTCAACAAAC 448
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 361 AACATTCAATCTCGATCAAGTTTCATTTGCCGCTGAAGGACTCAAAGATGCTCAACAAAC 420
Query 449 TATGACAGCACTAAAATCTGCGAACAAGGAGTTGAAAGGAATGATGAAAACCGTCAAGAT 508
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 TATGACAGCACTAAAATCTGCGAACAAGGATTTGAAAGGAATGATGAAAACCGTCAAGAT 480
Query 509 TCAAGATATTGATAATTTACAAGACGAGATGATGGATCTGATGGATGTTAGTTCTGAAAT 568
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCAAGATATTGATAATTTGCAAGACGAGATGATGGATCTGATGGATGTTAGTTCTGAAAT 540
Query 569 TCAAGAATCACTTGGTAGGAGCTACAATATTCCTGATGGCCTTGACGAGGATGACCTCAT 628
||||||| |||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 541 TCAAGAAACACTTGGTAGAAGCTACAATATTCCTGATGGCCTTGATGAAGATGACCTCAT 600
Query 629 GGGAGAGCTTGATGCTCTTGAAGCTGACATGGGAAACGAGACCGAAGCAGATGGAATGCC 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGGAGAGCTTGATGCTCTTGAAGCTGACATGGGAAACGAGACCGAAGCAGATGGAATGCC 660
Query 689 TTCTTATCTCCAACCTGATACAGAAACTGATTACGATAGCGAGCTTAACTTGCCTGCAGC 748
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 661 TTCTTATCTCCAACCGGATACAGAAACTGATTACGATAACGAGCTTAACTTGCCTGCAGC 720
Query 749 ACCAACAGGACACAATGGAGCTCCACATGGAAGAGCTCAGGCTGAGGACGAATTTGGATT 808
||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||
Sbjct 721 ACCAACAGGACACAATGGAGCGCCACAGGGAAGAGTTCAGGCTGAGGACGAATTTGGATT 780
Query 809 ACCAGCAGTGCCACGAGCTTCTCTCCGGGGTTAAGTTCCGGCGATTCTCTTGTTGATTGG 868
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 781 ACCAGCAGTGCCACGAGCTTCTCTCCGGGGATAAGTTCCACCGATTCTCTTGTTGGGTGG 840
Query 869 AGCTACTAAGCTTTTTTATTTAGCCTTAGTATCGTTATTCATTTGTGCATAACGTTTTAA 928
||||||||||||||| ||||||||||||| || |||||||||||||||||||||||| |
Sbjct 841 AGCTACTAAGCTTTT--ATTTAGCCTTAGTGTCTTTATTCATTTGTGCATAACGTTTTTA 898
Query 929 ACTTTGATAAACCTCCTTTTGGCTTTCTCATTGAATTTATAAATTGTCTTATTTCA---- 984
|||||||||||| ||||||||||||||| ||||| || | ||||||||||||||||
Sbjct 899 ACTTTGATAAACTTCCTTTTGGCTTTCTTATTGACTTCAAAAATTGTCTTATTTCATGTA 958
Query 985 -C--AGATATCATATTTTCAATCATCAAAAACACAAATGAGGAGAATTTT 1031
| |||| |||||||||| |||||||| ||||||||||| |||||||||
Sbjct 959 TCTCAGATTTCATATTTTCTATCATCAATAACACAAATGATGAGAATTTT 1008
> Ahg325121 jgi|Araly1|325121|fgenesh1_pm.C_scaffold_6000341
Length=708
Score = 754 bits (408), Expect = 0.0
Identities = 617/717 (86%), Gaps = 18/717 (3%)
Strand=Plus/Plus
Query 135 ATGAGGAGAGT-TTTCGGCGCGAAAAAGAACACAGAGCCTCCTCCGTCCATTCAGGATGC 193
|||| |||| | ||| || ||||| || |||| ||||||||| || || |||||||||||
Sbjct 1 ATGAAGAGAATCTTT-GGTGCGAAGAATAACAAAGAGCCTCCACCTTCTATTCAGGATGC 59
Query 194 CTCTGATCGGATAAATAAAAGAGGAGATTCGGTAGAAGAT-AAGATAAAGAAGCTTGATG 252
|||||||||||| |||||||||||||| || || |||||| ||| | |||| ||||||||
Sbjct 60 CTCTGATCGGATCAATAAAAGAGGAGAGTCAGTGGAAGATAAAG-TTAAGAGGCTTGATG 118
Query 253 TTGAGCTCTGCAAATACAAAGAACAGCTCAAAAAGACCAGACCTGGTCCTGCTCAAGAAG 312
||||||||||||||||||||| ||| |||||| ||| ||||||||||||||||||||||
Sbjct 119 CTGAGCTCTGCAAATACAAAGATCAGATCAAAAGGACTAGACCTGGTCCTGCTCAAGAAG 178
Query 313 CTGTCAAAGCTCGTGCTATGCGAGTTCTCAAGCAGAAGAAAATGTATGAAGGACAACGCG 372
|| ||||||||||||||||| |||| |||||||| ||||| ||||| ||||||||||| |
Sbjct 179 CTATCAAAGCTCGTGCTATGAGAGTCCTCAAGCAAAAGAAGATGTACGAAGGACAACGTG 238
Query 373 ACATGCTCTATAATCAGACATTCAATCTCGATCAAGTTTCATTCGCCGCTGAAGGACTCA 432
||||||||||||||||||| || || || |||||||||||||| || |||||| | || |
Sbjct 239 ACATGCTCTATAATCAGACTTTTAACCTTGATCAAGTTTCATTTGCTGCTGAAAGCCTTA 298
Query 433 AAGATGCTCAACAAACTATGACAGCACTAAAATCTGCGAACAAGGAGTTGAAAGGAATGA 492
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 299 AAGATGCTCAACAAACTATGACAGCGCTAAAATCTGCTAACAAGGAGTTGAAAGGAATGA 358
Query 493 TGAAAACCGTCAAGATTCAAGATATTGATAATTTACAAGACGAGATGATGGATC-TGATG 551
||||||||||||||||||||||||| |||||||| ||||| || |||||||| | | |||
Sbjct 359 TGAAAACCGTCAAGATTCAAGATATAGATAATTTGCAAGATGATATGATGGA-CTTAATG 417
Query 552 GATGTTAGTTCTGAAATTCAAGA-ATCACTTGGTAGGAGCTACAATATTCCTGATGGCCT 610
|||| ||||||||||||||||| | |||| ||||||||||| ||| ||||||||| | |
Sbjct 418 GATGAGAGTTCTGAAATTCAAGAGA-CACTCGGTAGGAGCTATAATGTTCCTGATGACAT 476
Query 611 TGACGAGGATGACCTCATGGGAGAGCTTGATGCTCTTGAAGCTGACATGGGAAACGAGAC 670
|||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGACGAAGATGACCTCTTGGGCGAGCTTGATGCTCTTGAAGCTGACATGGGAAACGAGAC 536
Query 671 CGAAGCAGATGGAATGCCTTCTTATCTCCAACCTGATACAGAAACTG-AT-T-AC-GATA 726
|||||||| ||| ||||||| ||||||||||| |||| || ||| | || | | |||
Sbjct 537 TGAAGCAGACGGAGTGCCTTCCTATCTCCAACCCGATA-AGGAACCGGATCTTAATGAT- 594
Query 727 GCGAGCTTAACTTGCCTGCAGCACCAACAGGACACA-ATGGAGCTCCACATGGAAGAGCT 785
| | || ||||||||| ||||||||| || || | | ||||| |||| ||| |||||
Sbjct 595 GA-A-CTGAACTTGCCTCCAGCACCAATGGGGCATACA-GGAGCACCACCCGGACGAGCT 651
Query 786 CAGGCTGAGGACGAATTTGGATTACCAGCAGTGCCACGAGCTTCTCTCCGGGGTTAA 842
||||||||||| |||| ||||||||||| || ||||| || || || ||||| |||
Sbjct 652 CAGGCTGAGGATGAATGGGGATTACCAGCGGTACCACGTGCATCACTTCGGGGCTAA 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38427900336
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5