BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10650.1
Length=4395
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903949 jgi|Araly1|903949|Al_scaffold_0003_1077 4237 0.0
> Ahg903949 jgi|Araly1|903949|Al_scaffold_0003_1077
Length=3972
Score = 4237 bits (2294), Expect = 0.0
Identities = 2570/2706 (95%), Gaps = 8/2706 (0%)
Strand=Plus/Plus
Query 74 ATGGCGAGCGCGGCACGGGGAGAGAGCAGCAATCCATACGGCGGCGGATTGGGAACCGGA 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGAGCGCGGCACGGGGAGAGAGCAGCAATCCATACGGCGGCGGATTGGGAACCGGA 60
Query 134 GGAAAGTTCCGGAAGCCGACGGCTCGTAGGTCTCAGAAAACTCCTTATGATCGACCAACG 193
||||||||||||||||| |||||||| ||| ||||||||||||| ||||||||||| ||
Sbjct 61 GGAAAGTTCCGGAAGCCAACGGCTCGAAGGACTCAGAAAACTCCGTATGATCGACCGCCG 120
Query 194 ACTTCTGTGAGGAACGCTGGACTTGGTGGCGGAGATGTCAGAGGCGGCGGCTGGTTGTCA 253
||||||||||||||| ||||| ||||||||| |||||||||||||||||| ||||||||
Sbjct 121 ACTTCTGTGAGGAACTCTGGAATTGGTGGCGAAGATGTCAGAGGCGGCGGTTGGTTGTCG 180
Query 254 AAATTGGTGGATCCGGCGCAGAGACTTATTACTTATAGTGCTCAGAGGCTCTTCGGGTCC 313
||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||
Sbjct 181 AAATTGGTGGATCCGGCGCAGAGGCTTATTACTTATAGTGCTCATAGGCTCTTCGCGTCC 240
Query 314 -TTATCCCGGAAACGCCTCGGCTCTGGTGAGACGCCTTTACAATCGCCGGAACAGCAGAA 372
|| | |||||||||||||||||| |||||||||||| |||| |||||||| ||||||||
Sbjct 241 GTT-TTCCGGAAACGCCTCGGCTCAGGTGAGACGCCTGTACAGTCGCCGGAGCAGCAGAA 299
Query 373 GCAGCTTCCAGAAAGAGGTGTGAATCAGGAGACGAAGGTTGGACACAAGGAGGACGTCTC 432
|||| |||||||||||| ||||||||||||||||||||| | ||||||||||||||||||
Sbjct 300 GCAGATTCCAGAAAGAGATGTGAATCAGGAGACGAAGGTAGTACACAAGGAGGACGTCTC 359
Query 433 TAATTTGTCCATGAAGAATGGTTTGATTCGGATGGAAGATACCAATGCCTCTGTCGATCC 492
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TAATCTGTCCATGAAGAATGGTTTGATTCGGATGGAAGATACCAATGCCTCTGTCGATCC 419
Query 493 ACCTAAGGATGGATTTACAGATCTTGAGAAAATCTTACAGGGAAAAACTTTTACAAGGTC 552
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AACGAAGGATGGATTTACAGATCTTGAGAAAATCTTACAGGGAAAAACTTTTACAAGGTC 479
Query 553 TGAAGTTGATCGATTAACTACCTTGTTGCGTTCAAAAGCTGCTGATTCATCCACTATGAA 612
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 480 TGAAGTTGATCGATTAACTACATTGCTGCGTTCAAAAGCTGCTGATTCATCCACTATGAA 539
Query 613 TGAGGAGCAGAGAAATGAAGTGGGTATGGTTGTGAGACATCCACCATCACATGAGAGGGA 672
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 540 TGAGGAGCAGAGAAATGAAGTGAGTATTGTTGTGAGACATCCACCATCACATGAGAGGGA 599
Query 673 TAGGACGCATCCAGATAATGGAAGTATGAACACCCTTGTTTCAACACCTCCTGGAAGTTT 732
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 CAGGACGCATCCAGATAATGGAAGTATGAACATCCTTGTTTCAACACCTCCTGGAAGTTC 659
Query 733 GAGAACTCTCGATGAGTGCATTGCGTCGCCAGCACAGCTTGCAAAAGCCTACATGGGTAG 792
|||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 660 GAGAGCTCTCGATGAGTGCATTGCTTCGCCAGCACAGCTTGCAAAAGCTTACATGGGTAG 719
Query 793 CAGACCTTCAGAAGTTACTCCTTCTATGTTAGGGTTACGTGGTCAAGCGGGTAGGGAAGA 852
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 720 CAGACCTTCAGAAGTTACTCCTTCTATGTTGGGGTTGCGTGGTCAAGCGGGTAGGGAAGA 779
Query 853 TTCTGTTTTCCTGAACAGAACCCCTTTTCCGCAAAAGTCACCTACAATGTCGCTGGTAAC 912
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 TTCTGTTTTCCTGAACAGAACCCCTTTTCCGCAAAAGTCACCTACAATGTCACTGGTAAC 839
Query 913 AAAGCCTTCTGGACAAAGACCTTTGGAAAATGGTTTTGTTACCCCTAGATCTCGGGGAAG 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AAAGCCTTCTGGACAAAGACCTTTGGAAAATGGTTTTGTTACCCCTAGATCTCGGGGAAG 899
Query 973 ATCTGCTGTTTATAGCATGGCCAGAACACCATACTCTAGGCCTCAGTCCAGTGTGAAGAT 1032
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 900 ATCTGCTGTTTATAGCATGGCCAGAACACCATACTCTAGGCCTCAGTCCACTGTGAAGAT 959
Query 1033 TGGGTCTCTTTTTCAAGCATCTCCAAGCAAATGGGAAGAAAGCTTACCTTCTGGTTCTAG 1092
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 960 TGGGTCTCTTTTTCAAGCATCTCCAAGCACATGGGAAGAAAGCTTGCCTTCTGGTTCTAG 1019
Query 1093 ACAAGGGTTTCAATCGGGTCTTAAACGCAGGAGCTCAGTCTTAGATAATGATATAGGATC 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACAAGGGTTTCAATCGGGTCTTAAACGCAGGAGCTCAGTCTTAGATAATGATATAGGATC 1079
Query 1153 TGTGGGCCCTGTAAGGAGGATCCGGCAAAAATCTAACCTTTCATCTCGAAGCTTGGCTCT 1212
||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 1080 TGTGGGCCCTGTAAGGAGGATTCGTCAAAAATCTAACCTTTCATCGCGAAGCTTGGCTCT 1139
Query 1213 GCCTGTTTCTGAGAGCCCACTTTCTGTCCGTGCCAATGGTGGAGAAAAAACTACGCATAC 1272
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1140 GCCTGTTTCTGAGAGCCCACTTTCTGTCCGTGCCAATGGTGGAGAAAAAACTACACATAC 1199
Query 1273 ATCTAAAGATAGTGCAGAGGATATTCCTGGTTCAAGTTTTAACCTTGTTCCTACCAAGTC 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 ATCTAAAGATAGTGCAGAGGATATTCCTGGTTCAAGTTTTAACCTTGTTCCTACCAAGTC 1259
Query 1333 CAGTGAGATGGCGTCAAAAATATTGCAGCAACTTGATAAACTGGTTTCAACAAGGGAGAA 1392
||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct 1260 AAGTGAGATGGCGTCAAAAATATTGCAGCAACTTGATAAAATTGTTTCAACGAGGGAGAA 1319
Query 1393 ATCACCAAGTAAGTTATCACCATCCATGCTACGGGGTCCCGCTCTCAAAAGCCTCCAGAA 1452
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1320 ATCACCAAGTAAGTTATCACCATCCATGCTTCGGGGTCCTGCTCTCAAAAGCCTCCAGAA 1379
Query 1453 TGTAGAGGCGCCAAAGTTTTTGGGTAATCTTCCCGAGAAGAAGGCAAATTCGCCAGATTC 1512
||| |||||||||||||| |||| ||||||||| |||||||||||||||| |||||| ||
Sbjct 1380 TGTGGAGGCGCCAAAGTTCTTGGATAATCTTCCTGAGAAGAAGGCAAATTTGCCAGAATC 1439
Query 1513 TAGTTATCAAAAGCAGGAAATATCTAGAGAAAGTGTCTCCAGAGAGGTTTTAGCTCAGAG 1572
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1440 TAGTTATCAAAAGCAGGAAATATCTAGAGAAAGTGTCTCCAGAGAGGTTTTAGCTCCGAG 1499
Query 1573 TGAGAAGACTGGTGATGCTGTTGATGGAACAAGCAAAACAGGTTCCAGTAAAGATCAGGA 1632
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1500 TGAGAAGACTGGTGGTGCTGTTGATGGAACAAGCAAAATAGGTTCCAGTAAAGATCAGGA 1559
Query 1633 TATGCGTGGTAAAGGTGTTTATATGCCTCTCACGAATTCTTTGGAAGAGCATCCTCCAAA 1692
|| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1560 TACGCGTGGTAAAGGTGTTTATTTGCCTCTCACTAATTCTTTGGAAGAGCATCCTCCAAA 1619
Query 1693 GAAGAGATCATTTCGAATGAGTGCGCATGAGGATTTCTTGGAGTTGGATGATGATCTTGG 1752
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1620 AAAGAGAGCATTTCGAATGAGTGCGCATGAGGATTTCTTGGAGTTGGATGATGATCATGG 1679
Query 1753 TGCAGCATCTACTCCATGTGAAGTAGCAGAAAAACAGAATGCCTTCGAAGTAGAGAAAAG 1812
||||||||||||||||| |||||| | ||||||||||||||||||| ||| |||||||||
Sbjct 1680 TGCAGCATCTACTCCATTTGAAGTGGTAGAAAAACAGAATGCCTTCAAAGGAGAGAAAAG 1739
Query 1813 TCATATCAGCATGCCTATAGGGGAGAAACCACTTACTCCATCTGAAGCCATGCCATCTAC 1872
||||||||||||||||| ||||||||||||||||||||| || || |||||||| |||||
Sbjct 1740 TCATATCAGCATGCCTAAAGGGGAGAAACCACTTACTCCGTCAGATGCCATGCCCTCTAC 1799
Query 1873 ATCATATATTTCTAATGGTGACGCCTCTCAGGGTACTTCTAATGGGTCTCTGGAAACTGA 1932
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 ATCATATATTTCTAATGGTGACGCCTCTCAGGGTACTTCTAATGGGTCTCTGGAAACTGG 1859
Query 1933 AAGAAACAAGTTTGTTGCTTTCCCCATTGAAGCTGTTCAGCAAAGTAATATGGCCTCTGA 1992
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1860 AAGGAACAAGTTTGTTGCTTTGCCCATTGAAGCTGTTCAGCAAAGTAATATGGCCTCTGA 1919
Query 1993 GCCAACTTCAAAGTTCATCCAAGGGACTGAGAAATCGAGTATTTCTTCTGGCAAGCCAAC 2052
||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||
Sbjct 1920 ACCAACTTCAAAGTTCATCCAAGGAACTGAGAAATCGAGTATTTCTTTTGGCAAACCAAC 1979
Query 2053 CTCAGAAGAGAAACGTATCCCTCTGGAAGAGCCTAAAAAACCTGCTGCTGTATTTCCCAA 2112
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1980 CACAGAAGAGAAAGGTATCCCTCTGGAAGAGCCTAAAAAACCTGCTGCTGTATTTCCCAA 2039
Query 2113 TATCTCCTTTTCACCGCCTGCCACGGGCTTATTAAATCAAAACAGTGGTGCATCTGCAGA 2172
||||||| |||||| |||| || ||||||||||||||||||| || ||||||||||||
Sbjct 2040 CATCTCCTCATCACCGGCTGCAACTGGCTTATTAAATCAAAACACTGCTGCATCTGCAGA 2099
Query 2173 CATCAAGTTAGAAAAGACTAGCAGCACTGCGTTTGGAGTATCAGAGGCTTGGGCAAAGCC 2232
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 2100 CATCAAGTTAGAAAAGACTAGCAGCACTGCTTTTGGAGTATCTGAAGCTTGGGCAAAGCC 2159
Query 2233 AACTGAATCAAAGAAAACGTTCAGCAACAGTGCTTCTGGAGCTG-AGTCATCTACCTCAG 2291
|||||||||||||||||| |||||||||| ||||||||||| || ||||| |||||||||
Sbjct 2160 AACTGAATCAAAGAAAACTTTCAGCAACAATGCTTCTGGAG-TGGAGTCAACTACCTCAG 2218
Query 2292 CTGCACCAACCCTCAATGGTAGTATATTCTCAGCTGGAGCAAACGCTGTCACTCCACCTC 2351
||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2219 CTGCATCAACCCTCAATGGTAGTATATTCTCAGCTGGAGCAAACGCTGTTAATCCACCTC 2278
Query 2352 CGAGTAATGGCTCTCTTACTTCAAGCCCTTCCTTCCCACCTTCTATTTCAAATATACCTT 2411
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 2279 CGAGTAATGGCTCTCTTACTTCAAGCCCTTCCTTCCAACCTACTATTTCAAATATACCTT 2338
Query 2412 CTGATAATTCTGTGGGTGATATGCCGTCCACTGTTCAATCTTTTGCTGCTACTCACAATT 2471
| || |||| ||||||||| ||| |||| ||||||||||| ||||||||||||||||||
Sbjct 2339 CGGAGAATTATGTGGGTGAGGTGCTGTCCGCTGTTCAATCTCTTGCTGCTACTCACAATT 2398
Query 2472 CCTCTAGTATATTTGGAAAGTTGCCTACCAGTAACGACAGCAACTCACAATCAACTTCAG 2531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2399 CCTCTAGTATATTTGGAAAGTTGCCTACCAGTAACGACAGCAACTCACAATCAACTTCAG 2458
Query 2532 CATCTCCCCTCTCTTCCACATCACCTTTCAAGTTTGGGCAACCTGCAGCTCCGTTTTCTG 2591
|| ||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 2459 CACCTCCCCTCTCTTCTACATCACCTTTCAAGTTTGGGGAACCTGCAGCTCCATTTTCTG 2518
Query 2592 CGCCAGCAGTGTCTGA-ATCTAGCGGTCAGATCTCAAAGGAGACTGAAGTAAAAAACGCC 2650
||||||||| ||| | ||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 2519 TGCCAGCAGTATCT-ACATCTAGCAGTCAGATCTCAAAGGAGACTGAAGTTAAAAACGCC 2577
Query 2651 ACATTTGGAAATACAAGCACTTTCAAGTTTGGAGGTATGGCTTCAGCAGACCAGAGCACT 2710
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| | |||||
Sbjct 2578 ACATTTGGAAATACAAACACTTTCAAGTTTGGAGGTATGGCTTCAGTAGACCCGGGCACT 2637
Query 2711 GGCATCGTTTTTGGTGCTAAATCTGCG-GAAAATAAAAGCAGACCTGGTTTTGTGTTTGG 2769
|||| |||||||||||||||||||| | ||||||||||||| ||| ||||||||||||||
Sbjct 2638 GGCAGCGTTTTTGGTGCTAAATCTG-GAGAAAATAAAAGCACACCAGGTTTTGTGTTTGG 2696
Query 2770 GAGCTC 2775
||||||
Sbjct 2697 GAGCTC 2702
Score = 1886 bits (1021), Expect = 0.0
Identities = 1170/1241 (94%), Gaps = 14/1241 (1%)
Strand=Plus/Plus
Query 2767 TGGGAGC-TCCTCCGTTGTTGGTGGCAGCACATTAAACCCTTCTACTGCTGCAGCTTCAG 2825
||||| | ||||| || |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 2742 TGGGA-CATCCTCTGTGGTTGGTGGGAGCACATTAAACCCTTCTACTGCTGCAGCTTCGG 2800
Query 2826 CACCTGAGAGCTCTGGAAGTTTAATATTTGGTGTGACATCGTCCTCAACCCCTGGGACAG 2885
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2801 GACCTGAGAGCTCTGGAAGTTTAATATTTGGTGTGACATCTTCCTCAACCCCTGGGACAG 2860
Query 2886 AGACCAGCAAAATTTCTGCGAGTTCTGCAGCTACTAATACTGGAAATAGTGTATTTGGCA 2945
||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| |
Sbjct 2861 AGACCAGCAAATTTTCTGCGAGTTCTACAGCTACTAATACTGGAAATAGTATATTTGGTA 2920
Query 2946 CTTCCTCTTTTGCATTTACAAGCTCTGGTAGTAGCATGGTTGGTGGTGTATCTGCAAGTA 3005
|||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 2921 CTTCCTCTACCGCATTTACAAGCTCTGGTAGTAGCATGTTTGGTGGTGTAGCTGCAAGTA 2980
Query 3006 CTGGAAGCAGTGTTTTTGGATTCAATGCTGTTTCATCAGCTTCTGCTACTAGCTCTCAAT 3065
|||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||
Sbjct 2981 CTGGAAGCAGTGTTTTTGGATTCAATGCTGCTTCATCAGCTTCTACTGCTAGCTCTCAAT 3040
Query 3066 CTCAGGCCTCAAATCTTTTTGGTGCTGGAAATGCTCAGACGGGTAATACTGGGAGCGGAA 3125
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3041 CCCAGGCCTCAAATCTTTTTGGTGCTGGAAATGCTCAGACGGGTAATACCGGGAGCGGAA 3100
Query 3126 CCACAACATCAACTCAAAGCATCCCCTTTCAGTTTGGTTCATCTCCATCAGCTCCTTCAT 3185
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3101 CCACAACATCAACTCAAAGCATCCCCTTTCAGTTTGGTTCATCTGCATCAGCTCCTTCAT 3160
Query 3186 TTGGTTTGTCTGGGAACTCTTCTCTTGCATCAAACAGTTCTCCATTTGGATTTTCTAAGT 3245
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 3161 TTGGTTTGTCTGGGAACTCTTCTCTTGCATCAAACAGTTCTCCATTTGGGTTTTCAAAGT 3220
Query 3246 CGGAACCTGCTGTATTTACTTCTGTG-TCAACTCCTCAATTGAGTTCGACAAACTCCTCT 3304
|||||||||||||||||||||||| | ||||||||||| ||||||||||||||| |||||
Sbjct 3221 CGGAACCTGCTGTATTTACTTCTG-GCTCAACTCCTCAGTTGAGTTCGACAAACACCTCT 3279
Query 3305 GCAAGCTCTAGTAGTACAATGAGCTCTCCCCTATTTGGGACAAGCTGGCAAGCTCCCAAC 3364
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3280 GCAAGCTCTAGTGGTACAATGAGCTCTCCCCTATTTGGGACAAGCTGGCAAGCTCCCAAC 3339
Query 3365 TCTTCTCCAAACTCTGGTCCAGTCTTCAGTTCCTCGTTCACCACATCTTCAACTCCTACC 3424
||| |||||||||||| ||||||||||||||||||||||||||| ||||||| ||||
Sbjct 3340 TCTGCTCCAAACTCTGCTCCAGTCTTCAGTTCCTCGTTCACCACTTCTTCAAATCCT--- 3396
Query 3425 ACCTTTTCCTTTGGAGGATCTTCTGCTGCTACTG-TTTCGAGCACTACTA-CTCCCATTT 3482
|||||||||||||||||||||||||||||||||| ||| ||||||| | | |||||||||
Sbjct 3397 ACCTTTTCCTTTGGAGGATCTTCTGCTGCTACTGCTTT-GAGCACT-CCAGCTCCCATTT 3454
Query 3483 TTGGTGCATCTACCAACAACACCCCGTCACCTTCACCTATCTTTGGTTTCGGGTCAACCC 3542
|||||||||||| | |||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 3455 TTGGTGCATCTA-C--CAACACCCCGTCACCTTCGCCTATCTTTGGTTTCGGCTCAACCG 3511
Query 3543 CTCCTACCACTCCCCAGCAGCCGGTATTTGGTAACTCAGGGACTCCATCACAGTCTCTGT 3602
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3512 CTCCTACCACTCCCCAGCAGCCGGTATTTGGTAACTCAGCGACTCCATCACAGTCTCTGT 3571
Query 3603 TTGGTAACTCAACTCCTGGGTTTGCATTTGGTGCACCTAATAATGGAAATGGTATCAACA 3662
|||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 3572 TTGGTAACTCAAATCCTGGGTTTGCATTTGGTGCAGCTAATAATACAAATGGTATCAACA 3631
Query 3663 ATAACCAACAAGTGAGCATGGAAGACAGTATGGCAGAAGACACAGACCAAGCTAATAGAG 3722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3632 ATAACCAACAAGTGAGCATGGAAGACAGTATGGCAGAAGACACAGACCAAGCTAATAAAG 3691
Query 3723 CATCTATGGTAGCCCCAATGTTTGGACAAGCAGCAGTCTCGATGCCTCAACCAAACTTTG 3782
|||| |||| | |||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 3692 CATCCATGGCATCCCCAATGTTTGGACAAGCAGCTGTCTCGATACCTCAACCAAACTTTG 3751
Query 3783 CCTTCGGTGGAGGAGCAGCAACGCAGCCTCCATCAATGGCAAACCCCTTCCAGTTTGGAG 3842
|||| ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||
Sbjct 3752 CCTTTGGTGGAGGAGCAGCAACGCCGCCTCCATCAATGGCTAACCCGTTCCAGTTTGGAG 3811
Query 3843 GCCAACCAATGGCAAGCACGTTACAGAACGCATCACCTTTCCAGGCATCACAGAGTCTAG 3902
||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 3812 GCCAACCGATGGGAAGCACGTCACAGAACGCATCACCTTTCCAGGCATCACAGAGTCTAG 3871
Query 3903 AGTTCCAAGGAGGTGGGAGCTTTTCACTAGGCAGCACTGGAGGTGGCGATAAGTCAGGCC 3962
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 3872 AGTTCCAAGGAGGGGGGAGCTTTTCACTAGGCAGCACTGGAGGCGGAGATAAGTCAGGCC 3931
Query 3963 GCAGAATCTTCAAAGCAAAGAAATCCACCAGGAAGAAATAA 4003
||||||||||||||||||||||||||| ||| |||||||||
Sbjct 3932 GCAGAATCTTCAAAGCAAAGAAATCCAACAGAAAGAAATAA 3972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 166235478864
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5