BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10660.1
Length=2142
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478400 jgi|Araly1|478400|fgenesh2_kg.3__1101__AT3G10660.1 3136 0.0
Ahg905714 jgi|Araly1|905714|Al_scaffold_0003_2842 1989 0.0
Ahg939889 jgi|Araly1|939889|scaffold_600433.1 1740 0.0
Ahg345668 jgi|Araly1|345668|fgenesh1_pg.C_scaffold_4002010 636 0.0
> Ahg478400 jgi|Araly1|478400|fgenesh2_kg.3__1101__AT3G10660.1
Length=2089
Score = 3136 bits (1698), Expect = 0.0
Identities = 1869/1949 (96%), Gaps = 21/1949 (1%)
Strand=Plus/Plus
Query 1 ATGGGTAATGCTTGCGTTGGACCAAACATTTCTGGAAATGGTTTCTTGCAAACTGTTACG 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGGTAATGCTTGCGTTGGACCAAACATTTCTGGAAATGGTTTCTTACAAACTGTTACG 60
Query 61 GCTGCAATGTGGAGGCCACGGATCGGAGCTGAGCAAG---CTTCTTCTTCTTCCCATGGT 117
|||||||||||| ||||||||||||||| |||||||| |||||||||||||||| |
Sbjct 61 GCTGCAATGTGGCGGCCACGGATCGGAGTTGAGCAAGCTTCTTCTTCTTCTTCCCA---T 117
Query 118 AATGGACAAGTTTCTAAAGAAGCAGCTTCAGAACCAGCTA-CTGATCAAGTCCAGAATAA 176
|||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 118 AATGGACAAGTTGCTAAAGAAGCAGCTTCAGAACCAGC-ACCTGATCAAGTCCAGAATAA 176
Query 177 ACCCCCTGAGCCTATCACAATGCCAAGCT-CAAAGACCAATCCCGAAACTAAACTGAAAC 235
|||||||||||||||||||||||||| | ||| ||||||||||||||| |||| |||||
Sbjct 177 ACCCCCTGAGCCTATCACAATGCCAA-ATGCAAGGACCAATCCCGAAACCAAACCGAAAC 235
Query 236 CCGATCTAGAGATCCAACCTGAAGAAAAGAAGGAGAAAGTTCTTGCAGAAGAAACCAAGC 295
|||||||||||||||||||| | || ||||||||||| | ||||||| |||||
Sbjct 236 CCGATCTAGAGATCCAACCT--------G-AGCAGAAAGTTCTTCCTGAAGAAATCAAGC 286
Query 296 AGAAAGTTGTTCCTGAAGAAAGTAAGCAGGAAGTTCCTCCTGAAGAAAGTAAGCGGGAAG 355
||||||| ||||||||||||||||||||||||||| ||||||||| || ||||||||||
Sbjct 287 CGAAAGTTCTTCCTGAAGAAAGTAAGCAGGAAGTTCTTCCTGAAGAGAGCAAGCGGGAAG 346
Query 356 TTGTTGTGCAGCCGGAGTCAGCAAAACCAGAAACAAAGTCTGAATCCAAGCCAGAGACAA 415
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 TTGTTGTGCAGCCGGAGACAGCAAAACCAGAAACAAAGTCTGAATCCAAGCCAGAGACAA 406
Query 416 CAAAACCAGAAACAACGTCTGAAACCAAGCCAGAGACGAAAGCTGAACCTCAGAAGCCTA 475
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 407 TAAAACCAGAAACAACGTCTGAAACCAAGCCGGAGACGAAACCTGAACCTCAGAAGCCTA 466
Query 476 AACATATGAGGAGAGTGTCCAGTGCAGGGCTTAGAACTGAGTCAGTGTTGCAGAGGAAAA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 AACATATGAGGAGAGTGTCCAGTGCAGGGCTTAGAACTGAGTCAGTGTTGCAGAGGAAAA 526
Query 536 CTGAAAACTTTAAGGAGTTCTATTCATTAGGG-AGGAAACTTGGACAAGGGCAATTTGGG 594
||||||||||||| |||||||||||||| ||| ||||||||||||||||| |||||||||
Sbjct 527 CTGAAAACTTTAAAGAGTTCTATTCATT-GGGAAGGAAACTTGGACAAGGCCAATTTGGG 585
Query 595 ACGACGTTTTTATGCCTTGAGAAAGGTACTGGGAACGAATATGCGTGCAAGTCGATTTCC 654
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 586 ACGACGTTTTTATGCCTTGAGAAAGGTACGGGGAATGAGTATGCGTGCAAGTCGATTTCC 645
Query 655 AAGAGGAAGCTTTTGACTGATGAGGATGTTGAAGATGTGAGAAGAGAGATTCAGATAATG 714
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 646 AAGAGGAAGCTTTTGACTGATGAGGACGTTGAAGATGTGAGAAGGGAGATTCAGATAATG 705
Query 715 CATCACTTGGCTGGTCATCCGAATGTTATATCTATTAAAGGTGCTTATGAGGATGTTGTT 774
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 706 CATCACTTGGCTGGTCATCCAAATGTTATATCTATAAAAGGCGCTTATGAGGATGTTGTT 765
Query 775 GCGGTACATCTTGTGATGGAGTTGTGTTCGGGTGGCGAGCTTTTTGATAGAATTATTCAA 834
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 GCGGTACACCTTGTGATGGAGTTGTGTTCGGGTGGCGAGCTTTTTGATAGAATTATTCAA 825
Query 835 CGTGGACATTACACTGAGAGGAAAGCTGCTGAGCTTGCGAGAACCATTGTTGGGGTTTTA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 CGTGGACATTACACTGAGAGGAAAGCTGCTGAGCTTGCGAGAACCATTGTTGGGGTTTTA 885
Query 895 GAGGCTTGTCACTCTCTTGGTGTTATGCATCGGGACCTCAAGCCAGAGAATTTTCTATTT 954
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 886 GAGGCTTGTCACTCTCTTGGTGTTATGCATCGAGACCTCAAGCCCGAGAATTTTCTATTT 945
Query 955 GTTAGTAGAGAGGAAGATTCCCTGTTGAAAACGATCGACTTTGGACTCTCAATGTTCTTT 1014
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 946 GTTAGTAAAGAGGAAGATTCCCTCTTGAAAACGATCGACTTTGGACTCTCAATGTTCTTT 1005
Query 1015 AAGCCAGATGAGGTTTTTACAGATGTTGTTGGTAGTCCGTATTATGTAGCTCCAGAAGTT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 AAGCCAGATGAGGTTTTTACAGATGTTGTTGGTAGTCCGTATTATGTAGCTCCAGAAGTT 1065
Query 1075 CTTAGAAAGCGTTATGGTCCTGAATCAGATGTGTGGAGTGCTGGTGTGATTGTTTACATT 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 CTTAGAAAGCGTTATGGTCCTGAATCAGATGTGTGGAGTGCTGGTGTGATTGTTTACATT 1125
Query 1135 TTGTTAAGCGGAGTTCCTCCTTTCTGGGCCGAAACCGAACAAGGTATTTTCGAGCAGGTC 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 TTGTTAAGCGGAGTTCCTCCTTTCTGGGCCGAAACCGAACAAGGTATTTTCGAGCAGGTC 1185
Query 1195 CTTCATGGAGATCTTGACTTTTCATCTGATCCATGGCCAAGCATCTCTGAAAGCGCGAAA 1254
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1186 CTTCATGGAGATCTTGACTTTTCATCTGATCCATGGCCAAGCATCTCTGAAAGCGCAAAA 1245
Query 1255 GACTTGGTAAGGAAAATGCTTGTTCGAGACCCCAAGCGAAGACTAACCGCACATCAAGTA 1314
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1246 GACTTGGTGAGGAAAATGCTTGTTCGGGACCCCAAGCGAAGACTAACCGCACATCAAGTG 1305
Query 1315 TTATGTCATCCATGGGTACAGATTGACGGTGTGGCTCCAGATAAACCTCTGGACTCTGCT 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 TTATGTCATCCATGGGTACAGATTGACGGTGTGGCTCCAGATAAACCTCTGGACTCTGCT 1365
Query 1375 GTTCTGAGCCGTATGAAGCAATTTTCTGCAATGAACAAGTTCAAGAAAATGGCTCTTAGA 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 GTTCTGAGCCGTATGAAGCAATTTTCTGCAATGAACAAGTTCAAGAAAATGGCTCTTAGA 1425
Query 1435 GTCATAGCTGAGAGCTTATCTGAAGAAGAAATAGCCGGTTTAAAACAAATGTTCAAGATG 1494
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1426 GTCATAGCTGAGAGCTTATCCGAAGAAGAAATAGCCGGTTTAAAAGAAATGTTCAAGATG 1485
Query 1495 ATAGACGCAGACAATAGTGGTCAGATCACTTTTGAAGAACTGAAAGCAGGACTAAAACGA 1554
|| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1486 ATTGACGCAGACAACAGTGGTCAGATAACTTTTGAAGAACTGAAAGCAGGACTAAAACGA 1545
Query 1555 GTTGGTGCCAATCTCAAAGAGTCAGAGATTCTTGATCTAATGCAAGCTGCTGATGTGGAC 1614
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1546 GTTGGTGCCAATCTCAAAGAGTCAGAAATTCTTGATCTAATGCAAGCTGCTGATGTAGAC 1605
Query 1615 AATAGCGGAACGATAGACTACAAAGAGTTCATAGCCGCCACATTGCATCTAAACAAAATA 1674
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1606 AATAGCGGAACGATAGATTACAAAGAGTTCATAGCCGCCACATTGCATTTAAACAAAATA 1665
Query 1675 GAGAGAGAGGACCATTTGTTCGCCGCCTTCTCTTACTTTGACAAGGACGAGAGTGGCTTT 1734
||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 1666 GAGAGAGAGGACCATTTGTTCGCGGCCTTCTCCTACTTTGACAAGGACGAGAGCGGCTTC 1725
Query 1735 ATCACCCCGGACGAGCTTCAACAAGCTTGCGAAGAGTTTGGTGTTGAAGATGCCCGCATA 1794
|||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1726 ATCACCCCAGATGAGCTTCAACAAGCTTGCGAGGAGTTTGGTGTTGAAGATGCCCGCATA 1785
Query 1795 GAAGAAATGATGCGCGATGTTGATCAAGACAAGGATGGACGAATAGACTACAACGAGTTT 1854
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1786 GAAGAAATGATGCGCGATGTTGATCAAGACAAGGATGGGCGAATAGACTACAACGAGTTT 1845
Query 1855 GTGGCAATGATGCAGAAAGGGAGCATAATGGGAGGACCTGTGAAGATGGGTTTAGAGAAC 1914
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1846 GTGGTAATGATGCAGAAAGGGAGCATAATGGGAGGACCTGTGAAAATGGGTTTAGAGAAC 1905
Query 1915 AGCATTAGCATTTCTCTGAAACATTAGTT 1943
|||||||||||||||||||||||||||||
Sbjct 1906 AGCATTAGCATTTCTCTGAAACATTAGTT 1934
Score = 224 bits (121), Expect = 2e-57
Identities = 133/138 (96%), Gaps = 4/138 (3%)
Strand=Plus/Plus
Query 1992 ATGATGATCATGATTGTGTTTAT-CTCAACATTTTGATGAGA-TTTTTGTTCGTTAGACT 2049
||||||||||||||||||||| | |||||||||||||||||| |||||| ||||||||||
Sbjct 1954 ATGATGATCATGATTGTGTTT-TCCTCAACATTTTGATGAGATTTTTTG-TCGTTAGACT 2011
Query 2050 GGTTTAGGTAAATCTGTTTCTGTACTATGTACTTTTATGCATATACACATAGCTTTTGTC 2109
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2012 GGTTTAGGTAAATCTGTTTCTGTACTATGTACTTTTATGCATATACACATAGTTTTTGTC 2071
Query 2110 TGTAACTTTTGGTCATAA 2127
||||||||||||||||||
Sbjct 2072 TGTAACTTTTGGTCATAA 2089
> Ahg905714 jgi|Araly1|905714|Al_scaffold_0003_2842
Length=1257
Score = 1989 bits (1077), Expect = 0.0
Identities = 1172/1218 (96%), Gaps = 6/1218 (0%)
Strand=Plus/Plus
Query 388 ACAAAGTCTGAATCCAAGCCAGAGACAACAAAACCAGAAACAACGTCTGAAACCAAGCCA 447
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACAAAGTCTGAATCCAAGCAAGAGACAACAAAACCAGAAACAACGTCTGAAACCAAGCCG 60
Query 448 GAGACGAAAGCTGAACCTCAGAAGCCTAAACATATGAGGAGAGTGTCCAGTGCAGGGCTT 507
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGACGAAACCTGAACCTCAGAAGCCTAAACATATGAGGAGAGTGTCCAGTGCAGGGCTT 120
Query 508 AGAACTGAGTCAGTGTTGCAGAGGAAAACTGAAAACTTTAAGGAGTTCTATTCATTAGGG 567
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 121 AGAACTGAGTCAGTGTTGCAGAGGAAAACTGAAAACTTTAAAGAGTTCTATTCATT-GGG 179
Query 568 -AGGAAACTTGGACAAGGGCAATTTGGGACGACGTTTTTATGCCTTGAGAAAGGTACTGG 626
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 AAGGAAACTTGGACAAGGCCAATTTGGGACGACGTTTTTATGCCTTGAGAAAGGTACGGG 239
Query 627 GAACGAATATGCGTGCAAGTCGATTTCCAAGAGGAAGCTTTTGACTGATGAGGATGTTGA 686
|||||| |||||||| | ||||||||||||||||||||||||||| |||||||| |||||
Sbjct 240 GAACGAGTATGCGTGTACGTCGATTTCCAAGAGGAAGCTTTTGACGGATGAGGACGTTGA 299
Query 687 AGATGTGAGAAGAGAGATTCAGATAATGCATCACTTGGCTGGTCATCCGAATGTTATATC 746
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 AGATGTGAGAAGGGAGATTCAGATAATGCATCACTTGGCTGGTCATCCAAATGTTATATC 359
Query 747 TATTAAAGGTGCTTATGAGGATGTTGTTGCGGTACATCTTGTGATGGAGTTGTGTTCGGG 806
||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 360 TATTAAAGGCGCTTATGAGGATGTTGCTGCGGTACACCTTGTGATGGAGTTGTGTTCGGG 419
Query 807 TGGCGAGCTTTTTGATAGAATTATTCAACGTGGACATTACACTGAGAGGAAAGCTGCTGA 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGGCGAGCTTTTTGATAGAATTATTCAACGTGGACATTACACTGAGAGGAAAGCTGCTGA 479
Query 867 GCTTGCGAGAACCATTGTTGGGGTTTTAGAGGCTTGTCACTCTCTTGGTGTTATGCATCG 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GCTTGCGAGAACCATTGTTGGGGTTTTAGAGGCTTGTCACTCTCTTGGTGTTATGCATCG 539
Query 927 GGACCTCAAGCCAGAGAATTTTCTATTTGTTAGTAGAGAGGAAGATTCCCTGTTGAAAAC 986
||||||||||| |||||||||||||| ||||||| ||||||||||||||| ||||||||
Sbjct 540 AGACCTCAAGCCCGAGAATTTTCTATTCGTTAGTAAAGAGGAAGATTCCCTCTTGAAAAC 599
Query 987 GATCGACTTTGGACTCTCAATGTTCTTTAAGCCAGATGAGGTTTTTACAGATGTTGTTGG 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GATCGACTTTGGACTCTCAATGTTCTTTAAGCCAGATGAGGTTTTTACAGATGTTGTTGG 659
Query 1047 TAGTCCGTATTATGTAGCTCCAGAAGTTCTTAGAAAGCGTTATGGTCCTGAATCAGATGT 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TAGTCCGTATTATGTAGCTCCAGAAGTTCTTAGAAAGCGTTATGGTCCTGAATCAGATGT 719
Query 1107 GTGGAGTGCTGGTGTGATTGTTTACATTTTGTTAAGCGGAGTTCCTCCTTTCTGGGCCGA 1166
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 GTGGAGTGCTGGTGTGATTGTTTACATTTTGTTAAGCGGAGTTCCTCCTTTTTGGGCCGA 779
Query 1167 AACCGAACAAGGTATTTTCGAGCAGGTCCTTCATGGAGATCTTGACTTTTCATCTGATCC 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AACCGAACAAGGTATTTTCGAGCAGGTCCTTCATGGAGATCTTGACTTTTCATCTGATCC 839
Query 1227 ATGGCCAAGCATCTCTGAAAGCGCGAAAGACTTGGTAAGGAAAATGCTTGTTCGAGACCC 1286
||||||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||
Sbjct 840 ATGGCCAAGCATCTCTGAAAGTGCAAAAGACTTGGTGAGGAAAATGCTTGTTCGGGACCC 899
Query 1287 CAAGCGAAGACTAACCGCACATCAAGTATTATGTCATCCATGGGTACAGATTGACGGTGT 1346
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CACGCGAAGACTAACCGCACATCAAGTATTATGTCATCCATGGGTACAGATTGACGGTGT 959
Query 1347 GGCTCCAGATAAACCTCTGGACTCTGCTGTTCTGAGCCGTATGAAGCAATTTTCTGCAAT 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GGCTCCAGATAAACCTCTGGACTCTGCTGTTCTGAGCCGTATGAAGCAATTTTCTGCAAT 1019
Query 1407 GAACAAGTTCAAGAAAATGGCTCTTAGAGTCAT--AGCTGAGAGCTTATCTGAAGAAGAA 1464
|||||||||||||||||||||||||||| | | | || | |||||| |||||||||
Sbjct 1020 GAACAAGTTCAAGAAAATGGCTCTTAGATTTTTTCAACTT-GT-CTTATCCGAAGAAGAA 1077
Query 1465 ATAGCCGGTTTAAAACAAATGTTCAAGATGATAGACGCAGACAATAGTGGTCAGATCACT 1524
||||||||||||||| |||||||||||||||| ||| ||||||| ||||||||||| |||
Sbjct 1078 ATAGCCGGTTTAAAAGAAATGTTCAAGATGATTGACACAGACAACAGTGGTCAGATAACT 1137
Query 1525 TTTGAAGAACTGAAAGCAGGACTAAAACGAGTTGGTGCCAATCTCAAAGAGTCAGAGATT 1584
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1138 TTTGAAGAACTGAAAGCAGGACTAAAACGAGTTGGTGCCAATCTCAAAGAGTCAGAAATT 1197
Query 1585 CTTGATCTAATGCAAGCT 1602
||||||||||||||||||
Sbjct 1198 CTTGATCTAATGCAAGCT 1215
> Ahg939889 jgi|Araly1|939889|scaffold_600433.1
Length=1874
Score = 1740 bits (942), Expect = 0.0
Identities = 1316/1498 (88%), Gaps = 20/1498 (1%)
Strand=Plus/Plus
Query 456 AGCTGAACCTCAGAAGCCTAAACATATGAGGAGAGTGTCCAGTGCAGGGCTTAGAACTGA 515
|||| ||||| ||||||||||||| |||| ||||||||| |||||||||||||| |||||
Sbjct 368 AGCTAAACCTAAGAAGCCTAAACACATGAAGAGAGTGTCAAGTGCAGGGCTTAGGACTGA 427
Query 516 GTCAGTGTTGCAGAGGAAAACTGAAAACTTTAAGGAGTTCTATTCATTAGGG-AGGAAAC 574
|||||| ||||||||||| ||||||||||| ||||| |||||||| || ||| |||||||
Sbjct 428 GTCAGTATTGCAGAGGAAGACTGAAAACTTCAAGGAATTCTATTCCTT-GGGAAGGAAAC 486
Query 575 TTGGACAAGGGCAATTTGGGACGACGTTTT-TATGCCTTGAGAAAG-GTACTGGGAACGA 632
| ||||||||||||||||||||||| |||| |||| | ||| ||| ||| ||||| ||
Sbjct 487 TCGGACAAGGGCAATTTGGGACGAC-TTTTCTATGTGTGGAG-AAGACTACAGGGAAGGA 544
Query 633 ATATGCGTGCAAGTCGATTTCCAAGAGGAAGCTTTTGACTGATGAGGATGTTGAAGATGT 692
| ||| |||||||||||| | ||||||||||| |||||||||||||| ||||| |||||
Sbjct 545 GTTTGCATGCAAGTCGATTGCTAAGAGGAAGCTGTTGACTGATGAGGACGTTGAGGATGT 604
Query 693 GAGAAGAGAGATTCAGATAATGCATCACTTGGCTGGTCATCCGAATGTTATATCTATTAA 752
|||||| || ||||||||||||||||||||||||||||| || ||||| ||||| |||||
Sbjct 605 GAGAAGGGAAATTCAGATAATGCATCACTTGGCTGGTCACCCCAATGTCATATCCATTAA 664
Query 753 AGGTGCTTATGAGGATGTTGTTGCGGTACATCTTGTGATGGAGTTG-TGTTCGGGTGGCG 811
||| ||||||||||||||||| ||||| || ||||| |||||| || ||| | |||||||
Sbjct 665 AGGAGCTTATGAGGATGTTGTGGCGGTGCACCTTGTAATGGAG-TGTTGTGCAGGTGGCG 723
Query 812 AGCTTTTTGATAGAATTATTCAACGTGGACATTACACTGAGAGGAAAGCTGCTGAGCTTG 871
|||||||||| || || |||||||| || || ||||| ||||||||||| ||||||||
Sbjct 724 AGCTTTTTGACAGGATCATTCAACGCGGTCACTACACAGAGAGGAAAGCGGCTGAGCTCA 783
Query 872 CGAGAACCATTGTTGGGGTTTTAGAGGCTTGTCACTCTCTTGGTGTTATGCATCGGGACC 931
| ||||| || |||||||| |||||||||| || |||||||||||||||||||| ||||
Sbjct 784 CTAGAACAATAGTTGGGGTAGTAGAGGCTTGCCATTCTCTTGGTGTTATGCATCGAGACC 843
Query 932 TCAAGCCAGAGAATTTTCTATTTGTTAGTAGAGAGGAAGATTCCCTGTTGAAAACGATCG 991
||||||| ||||||||||| |||||||||| | | ||||||||||| ||||| ||||| |
Sbjct 844 TCAAGCCCGAGAATTTTCTGTTTGTTAGTAAACACGAAGATTCCCTCTTGAAGACGATTG 903
Query 992 ACTTTGGACTCTCAATGTTCTTTAAGCCAGATGAGGTTTTTACAGATGTTGTTGGTAGTC 1051
| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 904 ATTTTGGACTCTCCATGTTCTTTAAGCCAGACGATGTTTTTACAGATGTTGTTGGTAGCC 963
Query 1052 CGTATTATGTAGCTCCAGAAGTTCTTAGAAAGCGTTATGGTCCTGAATCAGATGTGTGGA 1111
| |||||||| ||||||||||||||| ||||||||||||| |||||| | ||||| ||||
Sbjct 964 CATATTATGTTGCTCCAGAAGTTCTTCGAAAGCGTTATGGCCCTGAAGCTGATGTCTGGA 1023
Query 1112 GTGCTGGTGTGATTGTTTACATTTTGTTAAGCGGAGTTCCTCCTTTCTGGGCCGAAACCG 1171
||||||| |||||||| |||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 1024 GTGCTGGAGTGATTGTGTACATTTTATTAAGCGGAGTTCCTCCATTCTGGGCTGAAACCG 1083
Query 1172 AACAAGGTATTTTCGAGCAGGTCCTTCATGGAGATCTTGACTTTTCATCTGATCCATGGC 1231
|||||||||||||||| |||||||| || || |||||||||||||| || ||||||||||
Sbjct 1084 AACAAGGTATTTTCGAACAGGTCCTCCACGGTGATCTTGACTTTTCGTCCGATCCATGGC 1143
Query 1232 CAAGCATCTCTGAAAGCGCGAAA-GACTTGGTAAGGAAAATGCTTGTTC-GAGACCCCAA 1289
||||||| |||||||| || ||| || || || ||||||||||||| || | || |||||
Sbjct 1144 CAAGCATATCTGAAAGTGC-AAAGGATTTAGTGAGGAAAATGCTTG-TCAGGGATCCCAA 1201
Query 1290 GCGAAGACTAACCGCACATCAAGTATTATGTCATCCATGGGTAC-AGATTGACGGTGTGG 1348
| ||| |||| || || ||||||||||||||||| ||||| | || | ||||| ||||
Sbjct 1202 GAAAAGGTTAACTGCCCACCAAGTATTATGTCATCCGTGGGTTCAAG-TCGACGGCGTGG 1260
Query 1349 CTCCAGATAAACCTCTGGACTCTGCTGTTCTGAGCCGTATGAAGCAATTTTCTGCAATGA 1408
||||||| || ||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CTCCAGACAAGCCTTTGGATTCTGCTGTTCTGAGCCGTATGAAGCAATTTTCTGCAATGA 1320
Query 1409 ACAAGTTCAAGAAAATGGCTCTTAGAGTCATAGCTGAGAGCTTATCTGAAGAAGAAATAG 1468
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1321 ACAAGTTCAAGAAAATGGCTCTTAGAGTCATTGCTGAGAGCTTATCTGAAGAAGAAATAG 1380
Query 1469 CCGGTTTAAAACAAATGTTCAAGATGATAGACGCAGACAATAGTGGTCAGATCACTTTTG 1528
|||| | ||| ||||||| || |||||||| || ||||| ||||||||||| ||||| |
Sbjct 1381 CCGGCCTGAAAGAAATGTTTAATATGATAGATGCGGACAAGAGTGGTCAGATAACTTTCG 1440
Query 1529 AAGAACTGAAAGCAGGACTAAAACGAGTTGGTGCCAATCTCAAAGAGTCAGAGATTCTTG 1588
||||||||||||||||||| |||||||| || || |||||||||||||| || ||||| |
Sbjct 1441 AAGAACTGAAAGCAGGACTGAAACGAGTAGGGGCGAATCTCAAAGAGTCCGAAATTCTCG 1500
Query 1589 ATCTA-ATGCAAGCTGCTGATGTGGACAATAGCGGAACGATAGACTACAAAGAGTTCATA 1647
| || ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 1501 A-CTTGATGCAAGCTGCTGATGTGGACAACAGCGGAACAATAGACTATAAAGAGTTCATA 1559
Query 1648 GCCGCCACATTGCATCTAAACAAAATAGAGAGAGAGGACCATTTGTTCGCCGCCTTCT-C 1706
|| || ||||||||||||||||||||||||||||||||||||||||| || ||||| | |
Sbjct 1560 GCTGCAACATTGCATCTAAACAAAATAGAGAGAGAGGACCATTTGTTTGCAGCCTT-TAC 1618
Query 1707 TTACTTTGACAAGGACGAGAGTGGCTTTATCACCCCGGACGAGCTTCAACAAGCTTGCGA 1766
||||||||||| || | ||| |||| |||||||||||||||||||||||||||||| ||
Sbjct 1619 ATACTTTGACAAAGATGGGAGCGGCTATATCACCCCGGACGAGCTTCAACAAGCTTGTGA 1678
Query 1767 AGAGTTTGGTGTTGAAGATGCCCGCATAGAAGAAATGATGCGCGATGTTGATCAAGACAA 1826
|||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1679 GGAGTTTGGTGTTGAGGATGTCCGCATAGAAGAACTGATGCGCGATGTTGATCAAGACAA 1738
Query 1827 GGATGGACGAATAGACTACAACGAGTTTGTGGCAATGATGCAGAAAGGGAGCATAATGGG 1886
|| || ||||||||||||||||| ||||||||||||||||||||||| ||||| | ||
Sbjct 1739 CGACGGGCGAATAGACTACAACGAATTTGTGGCAATGATGCAGAAAGGAAGCATCACAGG 1798
Query 1887 AGGACCTGTGAAGATGGGTTTAGAGAACAGCATTAGCATTTCTCTGAAACAT-TAGTT 1943
|||||||||||| |||||| ||||||| ||| |||||||| |||| |||| | |||||
Sbjct 1799 AGGACCTGTGAAAATGGGTCTAGAGAAAAGCTTTAGCATTGCTCTTAAAC-TCTAGTT 1855
> Ahg345668 jgi|Araly1|345668|fgenesh1_pg.C_scaffold_4002010
Length=1761
Score = 636 bits (344), Expect = 0.0
Identities = 1022/1342 (76%), Gaps = 76/1342 (6%)
Strand=Plus/Plus
Query 565 GGGAGGAAACTT-GGACAAGGGCAATTTGGGACGACGTTT-TTATGCCTTGAGAA-AGGT 621
|||| |||| || || ||||| |||||||| || |||||| || ||| | || || | |
Sbjct 418 GGGA-GAAAATTAGGTCAAGGACAATTTGGAACAACGTTTCTT-TGCGTGGATAAGAAG- 474
Query 622 ACTGGGAACGAATAT-GCGTGCAAGTCGATTTCCAAGAGGAAGCTTTTGACTGATGAGGA 680
|| || || |||| | || ||||| |||| | |||||||| || || ||||||
Sbjct 475 ACAGGTAAAGAAT-TCGCTTGCAAAACGATAGCTAAGAGGAAACTAACAACACCTGAGGA 533
Query 681 TGTTGAAGATGTGAGAAGAGAGATTCAGATAATGCATCACTTGGCTGGTCATCCGAATGT 740
||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || ||
Sbjct 534 TGTTGAAGATGTGAGAAGAGAGATTCAGATAATGCATCATTTGTCTGGTCATCCAAACGT 593
Query 741 TATATCT-ATTAAA-GGTGCTTATGAGGATGTTGTTGCGGTACATCTTGTGATGGAG-TT 797
|| || || | ||||| ||||| |||| || || || ||| ||||||||||| ||
Sbjct 594 GAT-TCAGAT-AGTTGGTGCGTATGAAGATGCAGTAGCTGTTCATGTTGTGATGGAGATT 651
Query 798 GTGTTCGGGTGGCGAGCTT-TTTGATAGAATTATTCA-ACGTGGACATTACACTGAGAGG 855
||| | ||||| ||| || |||||||| ||||| || | | |||||||| |||||||
Sbjct 652 -TGTGCAGGTGGAGAG-TTATTTGATAGGATTATACAGA-GAGGACATTATACTGAGAAA 708
Query 856 AAAGCTGCTGAGCTTGCGAGAACCATTGTTGGGGTTTTAGAGGCTTGTCACTCTCTT-GG 914
||||||||||||||||| || | ||||||||| ||| |||| |||||||| ||| || ||
Sbjct 709 AAAGCTGCTGAGCTTGCTAGGATCATTGTTGGTGTTATAGAAGCTTGTCATTCT-TTAGG 767
Query 915 TGTTATGCATCGGGACCTCAAGCCAGAGAATTTTCTA-TTTGTTAGTAGAGAGGAAGATT 973
||| ||||| || || || ||||| |||||||| || ||||||||| |||| |||||
Sbjct 768 TGTGATGCACCGTGATCTTAAGCCTGAGAATTT-CTTGTTTGTTAGTGGAGATGAAGAAG 826
Query 974 CC-CTGTTGAAAACGATCGACTTTGGACTCTCAATGTTCTTTAAGCCAG-ATGAGGTTTT 1031
| || | || || || || ||||| ||||| | |||||||| |||| | || ||
Sbjct 827 CTGCTCTC-AAGACTATTGATTTTGGTCTCTCTGTCTTCTTTAAACCAGGA-GAAACATT 884
Query 1032 TACAGATGTTGTTGGTAGTCCGTATTATGTAGCTCCAGAAGTTCTTA-G-AAAGCGTTAT 1089
|| ||||| ||||| ||||| |||||||| || ||||||||| ||| | ||| | ||||
Sbjct 885 CACTGATGTAGTTGGGAGTCCTTATTATGTGGCACCAGAAGTT-TTAAGGAAA-CATTAT 942
Query 1090 GGTCCTGAATCAGATGTGTGGAGTGCTGGTGTGATTGTTTACATTTTGTTAAGCGGAGTT 1149
||| ||||| ||||| ||||||||||| || ||| | |||||||| |||| || |||
Sbjct 943 AGTCATGAATGTGATGTTTGGAGTGCTGGAGTTATTATATACATTTTACTAAGTGGTGTT 1002
Query 1150 CCTCC-TTTCTGGGCCGAAACCGAACAAGGTAT-TTTCGAGCAGGTCCTTCAT-GGAGAT 1206
||||| ||| |||| ||||| ||||| || || ||| |||||||| || | || ||
Sbjct 1003 CCTCCGTTT-TGGGATGAAACGGAACAGGGGATCTTT-GAGCAGGTT-TTGAAAGGTGAC 1059
Query 1207 CTTGACTTT-TCATCTGATCCATGGCCAAGCATCTCTGAAAGCGCGAAAGACTTGGTAAG 1265
||||| ||| | ||| || |||||||| || | || ||||| || ||||| ||||| |
Sbjct 1060 CTTGATTTTAT-ATCAGAACCATGGCCTAGTGTATCAGAAAGTGCTAAAGATTTGGTCCG 1118
Query 1266 GAAAATGCTTGTTC-GAGACCCCAAGCGAAG--ACTAACCGCACATCAAGTAT-TATGTC 1321
||||| | | ||||||| ||| ||| | | || || ||| |||| | | ||||
Sbjct 1119 TCGGATGCTAAT-CAGAGACCCTAAG--AAGCGAATGACTGCTCATGAAGT-TCTCTGTC 1174
Query 1322 ATCCATGGGTACAGATT-GACGGTGTGGCTCCAGATAAACCTCTGGACTCTGCTGTTCTG 1380
|||| |||| |||| | || ||||| |||| ||||||||||| || |||||||| ||
Sbjct 1175 ATCCTTGGGC-CAGAGTAGATGGTGTTGCTCTTGATAAACCTCTTGATTCTGCTGTCCTT 1233
Query 1381 AGCCGTATG-AAGCAATTTTCTGCAATGAACAAGTTCAAGAAAATGGCTCTTAGAG-TCA 1438
|| ||| || || || ||||| || ||||||||| |||||||||| ||| | | || | |
Sbjct 1234 AGTCGTTTGCAA-CAGTTTTCAGCCATGAACAAGCTCAAGAAAATTGCTATCA-AGGTAA 1291
Query 1439 TAGCTGAGAGCTTATCTGAAGAAGAAATAGCCGGTTTAAAACAAATGTTCAAGATGATAG 1498
|||| |||||||| || || ||||| ||||| || || || ||||||||||||||||||
Sbjct 1292 TAGCAGAGAGCTTGTCAGAGGAAGAGATAGCAGGATTGAAGGAAATGTTCAAGATGATAG 1351
Query 1499 ACGCAGACAATAGTGGTCAGATCACTTTTGAAGAACTGAAAGCA-GGACTAAA-ACGAGT 1556
| ||||||||||||| || |||||| | |||||||| || | | || || | | ||||
Sbjct 1352 ATACAGACAATAGTGGACACATCACTCTAGAAGAACTCAA-GAAAGGTTTAGACA-GAGT 1409
Query 1557 TGGTGCCAATCTCAAAGAGTCAGAGATTCTT-G-ATCTAATGCAAGCTGCTGATGTGGAC 1614
|||||| | || ||||| ||||| || || | || ||||||| || || ||| | ||
Sbjct 1410 TGGTGCTGACCTTAAAGATTCAGAAATA-TTAGGAT-TAATGCAGGCAGCGGATATAGAT 1467
Query 1615 AATAGCGGAACGATAGACTACAAAGAGTTCATAGCCGCCACATTGCATCTAAACAAAATA 1674
|| || || || |||||||| |||||| ||||| || | ||||| | |||||||||
Sbjct 1468 AACAGTGGGACTATAGACTATGGAGAGTTTATAGCAGCGATGGTGCATTTGAACAAAATA 1527
Query 1675 GAGAGAGAGGACCATTTGTTCGCCGCCTTCTCTTACTTTGAC-AAGGACGAGA-GTGGCT 1732
|||| ||| |||||||||||| | || |||||||| |||||| ||| | | || |||| |
Sbjct 1528 GAGAAAGAAGACCATTTGTTCACAGCATTCTCTTATTTTGACCAAG-ATG-GAAGTGG-T 1584
Query 1733 T-TATCACCCCG-GACGAGCTTCAACAAGCTTGCGAAG-AGTTTGGTGTT-GAAGATGCC 1788
| ||| ||| | |||||||| |||||||||||| ||| | ||||| || | ||||
Sbjct 1585 TATATAACCA-GAGACGAGCTCCAACAAGCTTGC-AAGCAATTTGGC-TTAGCGGATGTT 1641
Query 1789 CGCATAGAAGAAATGATGCGCGATGTTGATCAAG-ACAAGGATGGACGAATAGACTACAA 1847
| | || || || | ||||| || ||| ||| |||| |||||| ||||||| ||||
Sbjct 1642 CATTTGGACGACATTTTACGCGAAGTCGAT-AAGGACAACGATGGAAGAATAGATTACAG 1700
Query 1848 CGAGTTTGTGGCA-ATGATGCA 1868
|||||| |||| | ||||||||
Sbjct 1701 CGAGTTCGTGG-ATATGATGCA 1721
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80598958420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5