BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10670.1
Length=1376
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478401 jgi|Araly1|478401|fgenesh2_kg.3__1102__AT3G10670.1 2087 0.0
> Ahg478401 jgi|Araly1|478401|fgenesh2_kg.3__1102__AT3G10670.1
Length=1380
Score = 2087 bits (1130), Expect = 0.0
Identities = 1306/1388 (94%), Gaps = 23/1388 (2%)
Strand=Plus/Plus
Query 3 AAGAATCCCTGGACCTAACTAACCACATCACTTCACCGGATAAAACCTCCACCGTCTTCT 62
|||| |||||||||||||| ||||||||||||||||||||| |||||||||||| |||
Sbjct 1 AAGATTCCCTGGACCTAACCAACCACATCACTTCACCGGAT-AAACCTCCACCG---TCT 56
Query 63 TCCGCCGCAATTTCTGTCTCCATGGCCGGCGTTAACCTACAGCTCCGTCACGCATACTCC 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 TCCGCCGCAATTTCTGTCTCCATGGCCGGCGTTAACCTACAGCTCCGTCACGCATACTCT 116
Query 123 ATAGCTCAATTCGTTCCAACTGTTTCTTCTCCTCCTCCTCTTCCTACTCAGCGAGTTCGC 182
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 117 ATAGCTCAATTCGTTCCTACTGTTTCTTCTCCTCCTCCTCTTCATACTCAGCGAGTTCGG 176
Query 183 CTCGGGACTTCACCCTCTCGTGTTCTATTATGCAATCTCCGAGCTAATTCCGCCGCCGCT 242
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 177 CTCGGGACTTCACCCTCTCGTGTTCTCTTATGCAATCTCCGAGCTAATTCCGCCGCCGCT 236
Query 243 CCAATCCTGCGAACTACTCGCCGTTCAGTTATTGTTTCGGCGTCTTCCGTATCCTCAGCC 302
|||||||| | |||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 237 CCAATCCTACCAACTACTCGCCGTTCAGTTACTGTTTCGGCGTCTTCCGTATCCTCATCA 296
Query 303 GTCGATTCGGATTCGTTGGTGGAAGATCGTGATGACGTGGGGAGGATCCCGTTGCTTGAA 362
|||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||
Sbjct 297 GTCGATTCGGATTCGTTGGTGGAAGAACGCGATGACGTGGCGAGGATCCCGTTGCTTGAA 356
Query 363 GTTAGGGATTTGAGAGCAGTGATTGCTGAATCGAGACAAGAGATACTGAAAGGCGTCAAT 422
||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 357 GTTAGGGATTTGAGAGCTGTGATTGCTGAATCGAGACAGGAGATACTAAAAGGCGTCAAT 416
Query 423 TTGGTTGTCTACGAAGGAGAGGTTCACGCAGTGATGGGGAAGAACGGTTCAGGAAAGAGC 482
|| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 417 TTAGTTATCTACGAAGGAGAGGTTCACGCAGTGATGGGGAAGAACGGTTCAGGGAAGAGC 476
Query 483 ACGTTTTCGAAGGTTCTTGTTGGTCATCCCGATTATGAAGTGACGGGAGGGAGTATTGTG 542
|| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 477 ACATTTTCCAAGGTTCTTGTTGGTCATCCGGATTATGAAGTGACGGGAGGAAGTATAGTG 536
Query 543 TTTAAAGGGCAGAATCTACTTGATATGGAACCAGAGGATAGATCTCTTGCCGGTCTCTTT 602
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 537 TTTAAAGGGCAGAATCTACTTGATATGGAACCAGAAGATAGATCTCTTGCCGGTCTTTTT 596
Query 603 ATGAGTTTCCAGTCCCCAGTTGAGATCCCTGGTGTTAGCAATATGGATTTCTTGAATATG 662
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ATGAGTTTCCAATCCCCAGTTGAGATCCCTGGTGTTAGCAATATGGATTTCTTGAATATG 656
Query 663 GCATTCAATGCTCGGAAAAGAAAGCTTGGTCAGCCAGAGCTTGATCCAATCCAGTTCTAC 722
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GCATTTAATGCTCGAAAAAGAAAGCTTGGTCAGCCAGAGCTTGATCCAATCCAGTTCTAC 716
Query 723 AGCCACTTGGTATCAAAACTCGAAGTTGTGAATATGAAGACCGATTTTCTCAACAGAAAT 782
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 717 AGCCACTTAGTATCAAAACTTGAAGTTGTGAATATGAAGACCGATTTTCTCAACAGAAAT 776
Query 783 GTCAATGAAGGATTTAGTGGTGGTGAAAGGAAACGCAATGAGATTCTACAGTTAGCGGTC 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GTCAATGAAGGATTTAGTGGTGGTGAAAGGAAACGCAATGAGATTCTACAGTTAGCGGTC 836
Query 843 CTTGGAGCTGAGTTGGCTATACTGGACGAGATTGATTCAGGGTTGGATGTTGATGCTCTT 902
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 837 CTTGGAGCCGAGTTGGCTATACTGGACGAAATTGATTCAGGGTTGGATGTTGATGCTCTT 896
Query 903 CAAGATGTGGCAAAGGCGGTGAACGGGCTTTTGACACCAAAAAACTCTGTTCTGATGATA 962
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 897 CAAGATGTGGCAAAGGCGGTGAATGGGCTTTTGACACCAAAAAACTCTGTTCTGATGATA 956
Query 963 ACGCACTACCAACGCCTACTTGACTACATCAAACCAACTCTCATACATATCATGGAGAAT 1022
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 957 ACCCACTATCAACGCCTACTTGACTACATCAAACCAACTCTCATACACATCATGGAGAAT 1016
Query 1023 GGGAGAATCATTAAAACCGGAGACAACTCCTTGGCCAAACTACTGGAAAAGGAAGGCTAC 1082
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GGAAGAATCATTAAAACTGGAGACAACTCCTTGGCCAAACTACTGGAAAAGGAAGGCTAC 1076
Query 1083 AAAGCGATATCCGGTTAGTTATCGCGGATCATACATATAACCTGTCTTCCTTCTTTGAGA 1142
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1077 AAAGCGATATCCGGTTAGTTATCGCCGATCATACATATAACCTGTCTTCCTTCTCTGAGA 1136
Query 1143 GACCATGGTTATTATATGGGACAAATACAATGGAAGCTAAAGCTGATGATTGGAAACTGA 1202
|||||||||||| ||||||| |||| |||||||||||||||||||||||||||||| | |
Sbjct 1137 GACCATGGTTAT-ATATGGGTCAAAGACAATGGAAGCTAAAGCTGATGATTGGAAAATCA 1195
Query 1203 AATCTATCACTACAATCTTTGACCCGTAG-TTTTGGTTTG-CA--ATT--T--GCATGAC 1254
||| | |||||||||||||||||||||| |||| |||| || ||| | |||||||
Sbjct 1196 AATTTGCCACTACAATCTTTGACCCGTAGGTTTT--TTTGGCATCATTGGTTTGCATGAC 1253
Query 1255 AAACTACTTTATTGGGATGTGAACAGTA-TTCCACACCTTTTTGTAACTAACAAGTTTAA 1313
|||||||||||||||| |||||||||| ||||| ||||||||||||||||||| | |||
Sbjct 1254 AAACTACTTTATTGGGTTGTGAACAGTTCTTCCATACCTTTTTGTAACTAACAACTATAA 1313
Query 1314 AATTCAGTTAATAAATTTTGTTATTATAA-ATGCTCTTAT-A----AAGTTTGAGACTTT 1367
||||||||||||||||| |||||||| | ||||||| || | |||||||||||||
Sbjct 1314 AATTCAGTTAATAAATTATGTTATTA-ACGATGCTCTAATTATGTTAAGTTTGAGACTTG 1372
Query 1368 AAGTGGAT 1375
||||||||
Sbjct 1373 AAGTGGAT 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51504060867
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5