BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10680.1
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341204 jgi|Araly1|341204|fgenesh1_pg.C_scaffold_3000967 2052 0.0
> Ahg341204 jgi|Araly1|341204|fgenesh1_pg.C_scaffold_3000967
Length=1470
Score = 2052 bits (1111), Expect = 0.0
Identities = 1359/1479 (92%), Gaps = 15/1479 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCGATTTTCAAGAGACCAAGGCCGGGAGGTGGCCGTCATCCGCCACCGCTGGCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGCGATTTTCAAGAGACCAAGGCCGGGAGGTGGCCGTCATCCGCCACCGCTGGCT 60
Query 61 CCGACAGTGAGTAGTTTCAAGCCGAGAGCTCAATGGACTAACTCCGGATCTTCCATTTTC 120
||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 61 CCGACGGTGAGTAGTTTCAAGCCCAGAGCTCAATGGACTAACTCTGGATCTTCCATTTTC 120
Query 121 CTCTACGTTAATCTTCCTGGGTTTTATAGGGATCAAATAGAAATAAAAAAGGATGAGAGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCTACGTTAATCTTCCTGGGTTTTATAGGGATCAAATAGAAATAAAAAAGGATGAGAGG 180
Query 181 ACAAGGACTGTCCAGATTCAAGGCCAGCGACCGCTCTCTGCTCAGACTAAGGCTCGTTTC 240
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACAAGGACTGTCCAGATTCGAGGCCAGCGACCGCTCTCTGCTCAGACTAAGGCTCGTTTT 240
Query 241 AGTGAAGCTTACCGTGTCCCTGATACCTGTGACATGACCAAATTGAGCACCTCCTTCTCA 300
| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 AATGAAACTTACCGTGTCCCAGATACCTGTGACATGACCAAATTGAGCACCTCCTTCTCA 300
Query 301 CATGGACTCTTGACCATCGAGTTTCCAGCAATCGTGGAAGCTAACAAA-CAGGAGAAAGC 359
|||||||||||||| |||||||||||||| |||||||||||||| ||| |||||||||||
Sbjct 301 CATGGACTCTTGACGATCGAGTTTCCAGCGATCGTGGAAGCTAA-AAAGCAGGAGAAAGC 359
Query 360 AGTCCAAGATCAGGAGAAGATTGGACAGAGGTCTAATCAGGAGAAAAGTGGAGGGCCTGG 419
||| ||||||||| ||||||||||||||| ||||||| ||||||||||||||| |||||
Sbjct 360 AGTTAAAGATCAGGGGAAGATTGGACAGAGTTCTAATCGGGAGAAAAGTGGAGGCCCTGG 419
Query 420 TCCTAATGGGAGTACCTTGGGACGAAAGAAAGCTTTGGA-GGAGGAGAAACAAGTGGGAA 478
| | |||||||| | |||||||||||||||| ||| ||| || |||||||||||||||||
Sbjct 420 TGCAAATGGGAGGAGCTTGGGACGAAAGAAACCTTCGGACGG-GGAGAAACAAGTGGGAA 478
Query 479 CAAGTCAAGAGAAAACCACTCCAACGTTGAATGAAGAAGCACCCAAAACGTATAAATCAG 538
|||||||||| | | | |||||||||||||||||||| | || ||||||||||||||||
Sbjct 479 CAAGTCAAGATACAGCTGCTCCAACGTTGAATGAAGAA-C-CC-AAAACGTATAAATCAG 535
Query 539 TGGTTGAGGGTAAAAGAGCAGTGCCAACGGGCAGTCAAGAGAAGTCTGAAGCGAAAGTTA 598
|||||||||| |||||||| |||||||||||||||| ||| ||||||||| ||||||| |
Sbjct 536 TGGTTGAGGGGAAAAGAGCGGTGCCAACGGGCAGTCGAGAAAAGTCTGAAACGAAAGTAA 595
Query 599 AAGCGCGAGAGGCAATCCCTAGCTTAGGGGG-AAGAGAACGTGCGAAAGAAGAGAAGGTG 657
||||| |||| ||||| |||||||||| ||| || |||| ||| |||||||| ||||||
Sbjct 596 AAGCGAGAGAAGCAATTCCTAGCTTAGTGGGCAAC-GAACCTGCAAAAGAAGAAAAGGTG 654
Query 658 GTTGAGAGAAAGGAGGCTGCTCACATAGTTCAGCAAAAGATAGGAGATAAATTGAAGGAG 717
| |||||||||||||||||||| |||| |||||||||||| ||| | ||||| ||||||
Sbjct 655 GCCGAGAGAAAGGAGGCTGCTCAAATAGGTCAGCAAAAGATTGGACAAAAATTAAAGGAG 714
Query 718 GAAGAGGCTAAAAGTACACCAACCCTTGGTGGTAGCTTAAAACCTAAGGTACAGGCAAAA 777
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |||
Sbjct 715 GAAGAGGCTAAAAGAACACCAACCCTTGGTGGTAGTTTAAAACCCAAGGTACAGGGGAAA 774
Query 778 GAAGAGAAAGTAATTGAGAGAAAGAAAGATGATGATATAAGTCAGCTTAAGACTGGACAG 837
|| |||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 775 GAGGAGAAATTAATTGAGAGAAAGAAAGATGATGATATAAGTCAGAATAAGTCTGGACAG 834
Query 838 AAGGTGAAGGAAAAAGAGATTAGCAGAACGCCGACCATAGATGCTAGAGTGGAATCCAAG 897
||||||||||| |||||||||||||||||||||||||| |||||| |||||||| |||||
Sbjct 835 AAGGTGAAGGAGAAAGAGATTAGCAGAACGCCGACCATTGATGCTGGAGTGGAACCCAAG 894
Query 898 GAACATGCCAAAGTTGTTGAGAAAAAGGAAGATGGTGAAATAGGTCAGAAGCTGGA-G-G 955
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 895 GAACATGCTAAAGTTGTTGAGAAAAAGGAAGATGGTGAAATAGGTCAGAAGCTGAAAGAG 954
Query 956 GA-GGAAGGATTAACTTGGGACCAAAGAAAGAAGATAAATTTACAAAACCAGTTGTTGGT 1014
|| |||||||||||||| |||| |||||||||||| ||| |||| |||||||||||||||
Sbjct 955 GAAGGAAGGATTAACTTAGGACAAAAGAAAGAAGAGAAAATTACTAAACCAGTTGTTGGT 1014
Query 1015 GATGAGGCAAGAAGAATAGAGAAGAATGTTGCTCAGAGAAACCAAGCAGAGCCTAAGCTA 1074
|||||||||||||||||||||| ||| ||||||||| |||||||||||||||| || ||
Sbjct 1015 GATGAGGCAAGAAGAATAGAGATGAAAATTGCTCAGACAAACCAAGCAGAGCCTGAGATA 1074
Query 1075 AAAACGAAAGAGGGAGATGAAAGAATCAAACTGGATGTTGATGATGGCGTGAGAAACAAG 1134
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1075 AAAACGAAAGAGGGAGATGAAAGAATCAAACTGGATGTTGATGATCGCTTGAGAAACAAG 1134
Query 1135 CAGGATGAGAATAATGAGATGGTTGGAGACATGGTTAGTGAAGGAGAGATTCAAGACAGA 1194
||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 CAGGATGAGAAAAACGAGCCGGTTGGAGACATGGTTAGTGAAGGAGAGATTCAAGACAGA 1194
Query 1195 GTGGAGCAGAAGAAGATAGACGAAGCTGGTTTAGCCAAAGATAGAGGCGATCTAAAGGAT 1254
| | |||||||||| ||| | |||||| ||||||||||||||| ||| | | ||||||||
Sbjct 1195 GAGAAGCAGAAGAAAATAAAAGAAGCTTGTTTAGCCAAAGATACAGGAGGTTTAAAGGAT 1254
Query 1255 AATGCTGAAGTCGTGGAACCAGAAACCGGTCCATTACTAGTCAAAGAAGGACAGAAGAAG 1314
||||||||| ||||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 1255 AATGCTGAAATCGTGGATTCAGAAACCGGTCCATTACTAGTCAAAG--G-ACAGAAGAAG 1311
Query 1315 AGCGACATGGATCCTCCTCTTGCAGTAGGAGGAAGAGGAATGGGTGAAGAAGAGAGTCGG 1374
|| | ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 AGTGGCATAGATTCTCCTCTTGCAGTAGGAGGAAGAGGAATGGGTGAAGAAGAGAGTCGG 1371
Query 1375 ACATATGACATACCTTTGGTGAATGTTGGTGTAGCTGCTCTTGTGATTATGGGGTTTGGT 1434
|||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1372 ACATATGACATATCTTTGGTGAATGTTGGTGCAGCAGCTCTTGTGATTATGGGGTTTGGC 1431
Query 1435 GCTTACGTCTTTGTACCACTAGTAAAATATTTCTCCTGA 1473
|||||||||||||||||||| |||||||||||||| |||
Sbjct 1432 GCTTACGTCTTTGTACCACTTGTAAAATATTTCTCTTGA 1470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55116584515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5