BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10700.1
Length=1646
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478404 jgi|Araly1|478404|fgenesh2_kg.3__1105__AT3G10700.1 2230 0.0
> Ahg478404 jgi|Araly1|478404|fgenesh2_kg.3__1105__AT3G10700.1
Length=1468
Score = 2230 bits (1207), Expect = 0.0
Identities = 1372/1449 (95%), Gaps = 22/1449 (2%)
Strand=Plus/Plus
Query 6 TAGACGTGTTACCAAGCAGCACCTTATTTGGTCATCTTCCTCATTCGAAGGTTACTCGCA 65
||||||||||||||| || ||||||||||||||||||||||||||| | |||||||| ||
Sbjct 4 TAGACGTGTTACCAAACACCACCTTATTTGGTCATCTTCCTCATTCCACGGTTACTCCCA 63
Query 66 CTTCCTCTGCACACTTCTTCCTCTCCATCTAACCTCAGTACTCC-TACAATCCTCTAAGA 124
| | ||| | |||||| | || | || || | || || |||| | ||| || | |||
Sbjct 64 CAT-CTC-G--CACTTCCT-CTGTACA-CT-TCTTC-GT-CTCCATCCAA-CC-C-CAGA 111
Query 125 ATCCATAGATCAACTGCTGGGAAAAGCTTCGCGACAATGTCTTGGCCTACGGATTCTGAG 184
| | | | || |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 112 A--C-T---CCTAC-GCTGAGAAAAGCTTCGCGACAATGTCTTGGCCTACGGATTCTGAG 164
Query 185 TTAAATTCCATAAAGGAGGCAGTGGCTCAGATGAGTGGAAGAGATAAAGGAGAAGTTCGA 244
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 TTAATTTCCATAAAGGAAGCAGTGGCTCAGATGAGTGGAAGAGATAAAGGAGAAGTTCGA 224
Query 245 GTGGTGGTCGCTCCTTATCGTATATGTCCTTTAGGAGCTCACATTGATCACCAGGGTGGA 304
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 GTGGTGGTTGCACCTTATCGTATATGTCCTTTAGGAGCTCACATTGATCACCAGGGTGGA 284
Query 305 ACTGTATCAGCTATGACGATTAATAAAGGGATCCTTCTTGGTTTTGTTCCATCGGGTGAT 364
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 285 ACTGTATCAGCTATGACGATTAATAAAGGGATCCTTCTTGGTTTTGTTCCATCCGGCAAT 344
Query 365 ACTCAGGTCCAGTTGCGCTCTGCACAATTTGAAGGAGAAGTATGTTTCAGAGTAGATGAA 424
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 ACTCAGGTCCAGTTGCGTTCTGCACAATTTGAAGGAGAAGTATGTTTCAGAGTAGATGAA 404
Query 425 ATCCAGCACCCAATAGGCCTAGCAAACAAGAATGGTGCAAGCACGCCATCTCCATCGAAG 484
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 405 ATCCAGCACCCCATAGGCCTAGCAAACAAGAATGGTGCAAGCACCCCATCTCCATCGAAA 464
Query 485 GAAAAAAGTATCTGGGGTACTTATGCCAGAGGAGCAGTTTATGCGTTACAGAGCAGCAAA 544
|||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 465 GAAAAAAGCATCTGGGGCACTTATGCCAGAGGAGCAGTTTATGCGTTACAGACCAGCAAA 524
Query 545 AAGAATCTCAAACAGGGCATTATTGGTTACCTCAGTGGCTCAAATGGACTAGATAGCTCC 604
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 525 AAGAATCTCAAACAGGGCATTGTTGGTTACCTCAGTGGCTCAAATGGACTAGATAGTTCT 584
Query 605 GGGCTTAGCTCATCAGCTGCTGTTGGTGTGGCATACCTGCTAGCTCTAGAGAATGCAAAC 664
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 585 GGGCTTAGCTCATCAGCTGCTGTTGGTGTGGCATACCTGCTCGCTTTAGAGAATGCAAAC 644
Query 665 GAATTGACTGTATCCCCAACAGAAAATATCGAATATGACAGGCTTATTGAGAATGGGTAT 724
||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 645 GAATTGACTGTATCCCCAACAGAAAATATCGAATATGACAGACTTATTGAGAACGGATAT 704
Query 725 CTGGGTCTGCGGAATGGAATTTTGGATCAATCAGCTATTTTGCTTTCGAATTATGGGTGT 784
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 705 CTGGGTCTGCGGAATGGAATTTTGGATCAATCAGCCATTTTGCTTTCGAGTTATGGGTGT 764
Query 785 CTAACATACATGGACTGCAAGACTTTGGACCACGAGCTTGTACAGGCTCCTGAACTGGAG 844
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 765 CTAACATACATGGACTGCAAGACTATGGACCACGAGCTTGTACAGGCTCCTGAACTGGAG 824
Query 845 AAACCGTTCAGGATATTGTTAGCATTCTCAGGCTTGAGGCAGGCGTTGACCACCAACCCA 904
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 825 AAACCGTTCAGGATATTGTTAGCATTCTCAGGTTTGAGGCAGGCATTGACCACCAACCCA 884
Query 905 GGATATAATCTGCGAGTTTCTGAGTGTCAAGAGGCAGCAAAAGTTCTTTTGACTGCATCT 964
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 885 GGATATAATCTGCGAGTTTCTGAGTGTCAAGAGGCTGCAAAAGTTCTTTTGACTGCATCT 944
Query 965 GGGAACAGTGAGCTGGAACCTACGTTGTGCAATGTTGAGCATGCGGTCTATGAAGCTCAC 1024
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 945 GGGAACAGCGAGCTGGAACCTACCTTGTGCAATGTTGAGCATGCGGTCTATGAAGCTCAC 1004
Query 1025 AAGCATGAGCTGAAACCGGTTTTAGCTAAAAGAGCAGAGCATTATTTCTCGGAGAACATG 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1005 AAGCATGAGCTGAAACCGGTTTTAGCTAAAAGAGCAGAGCATTATTTCTCGGAAAACATG 1064
Query 1085 CGAGTTATCAAAGGACGGGAAGCCTGGGCTTCAGGGAATCTTGAAGAATTTGGAAAGCTA 1144
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1065 CGGGTTATCAAAGGACGGGAAGCCTGGGCTTCAGGCAATCTTGAAGAATTTGGAAAGCTA 1124
Query 1145 ATTTCAGCATCCGGCTTGAGTTCCATTGAGAATTACGAATGCGGTGCGGAGCCACTGATC 1204
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1125 ATTTCAGCATCCGGCTTGAGTTCCATTGAGAATTACGAATGCGGTGCGGAGCCACTAATC 1184
Query 1205 CAGCTATACAAGATTCTTCTGAAGGCTCCTGGTGTATATGGAGCTAGATTCAGCGGTGCA 1264
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1185 CAGCTATACAAGATTCTTCTGAAGGCTCCTGGTGTATATGGAGCTCGATTCAGCGGTGCA 1244
Query 1265 GG-TTTCAGGGGATGTTGTCTAGCCTTTGTAGATGCAGAAAAAGCTGAGGCAGCTGCTTC 1323
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 GGCTTT-AGGGGATGTTGTCTAGCCTTTGTAGATGCAGAAAAAGCTGAGGCAGCTGCTTC 1303
Query 1324 ATATGTGAAGGATGAATATGAAAAGGCCCAACCCGAGTTTGCTAACAATCTAAATGGAGG 1383
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1304 ATATGTGAAGGATGAATATGAAAAGGCCCAACCCGAGTTTGCTAAGAATCTGAATGGAGG 1363
Query 1384 AAAACCTGTTCTCATCTGTGAAGCAGGTGACGCTGCTCGTGTTCTTCTCTGATCAATCCT 1443
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1364 AAAACCTGTTCTCATCTGTGAAGCAGGTGATGCTGCTCGTGTTCTTCTCTGATCAATCCC 1423
Query 1444 GGAGTTTTT 1452
|||||||||
Sbjct 1424 GGAGTTTTT 1432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61706196900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5