BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10710.1
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341207 jgi|Araly1|341207|fgenesh1_pg.C_scaffold_3000970 2588 0.0
Ahg487283 jgi|Araly1|487283|fgenesh2_kg.6__417__AT5G04960.1 459 4e-128
> Ahg341207 jgi|Araly1|341207|fgenesh1_pg.C_scaffold_3000970
Length=1686
Score = 2588 bits (1401), Expect = 0.0
Identities = 1596/1691 (94%), Gaps = 10/1691 (1%)
Strand=Plus/Plus
Query 1 ATGTCCTCTCCTTACGGCAAAGTCGACGAGCGTGAACATGTAAGGCTCGAAGCTCGTCGT 60
|||||||| || ||||||||||||||||||| |||||| ||||||||| |||||||||||
Sbjct 1 ATGTCCTCCCCGTACGGCAAAGTCGACGAGCATGAACACGTAAGGCTCCAAGCTCGTCGT 60
Query 61 AAGACGAGAAAGAACATCGCAATCATCGCTGTATCACTAGTCATTCTTGCCGGAATCGTG 120
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 61 AAGACGAGAAAGAACATCGCAATAATCGCTGTATCACTCGTCATTCTCGCCGGAATCGTG 120
Query 121 ATCGGAGCTGTGTTTGGAACCATGGCTCACAAGAAGTCACCAGAGACAGTGGAGACTAAT 180
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 ATCGGAGCCGTGTTTGGAACCATGGCTCACAAGAAGTCATCAGAGACAGTGGAGACTAAT 180
Query 181 AACAACGGAGACTCAATCTCCGTTTCCGTTAAAGCCGTTTGCGACGTTACGTTGCATAAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AACAACGGAGACTCAATCTCCGTTTCCGTTAAAGCCGTTTGCGACGTTACGTTGCATAAA 240
Query 241 GAAAAATGCTTCGAAACCCTCGGATCAGCTCCAAACGCAAGCAGTCTCAATCCAGAAGAG 300
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 GACAAATGCTTCGAAACCCTCGGATCAGCTCCAAACGCAAGCAGTCTTAATCCAGAAGAG 300
Query 301 CTCTTCAGATACGCAGTCAAAATCACAATCGCCGAAGTTTCAAAAGCTATCAACGCTTTC 360
||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 301 CTCTTCAAATACGCAGTCAAAATCACAATCACCGAAGTTTCAAAAGCTCTCAACGCTTTC 360
Query 361 TCTTCATCCTTAGGCGATGAAAAGAACAACATCACCATGAACGCTTGCGCTGAGCTTCTT 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCCTCATCCTTAGGCGATGAAAAGAACAACATCACCATGAACGCTTGCGCTGAGCTTCTT 420
Query 421 GACCTAACGATAGATAACCTCAACAACACGTTAACCTCATCATCAAACGGTGATGTCACG 480
||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||
Sbjct 421 GACCTAACGATAGATAACCTCAACAACACGTTAACGTCATCAGCAAACGGTGGTGTCACG 480
Query 481 GTTCCTGAGCTAGTCGATGATCTCCGTACATGGCTGAGTTCAGCCGGGACGTATCAACGG 540
|||||||||||||| ||||| || |||||||||||||| ||||||| |||||||||| |
Sbjct 481 GTTCCTGAGCTAGTTGATGACCTACGTACATGGCTGAGCTCAGCCGAGACGTATCAA-GA 539
Query 541 A-CGTGCGTGGAAACGTTGGCTCCAGATATGAGGCCGTTCGGCGAAAGTCATCTCAAGAA 599
| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 540 AACGTGCGTGGAAACGTTGGCTCCAGATATGAAGCCGTTCGGAGAAAGTCATCTCAAGAA 599
Query 600 CTCAACGGAGTTGACGAGTAACGCACTAGCGATCATCACATGGCTCGGGAAGATCGCTGA 659
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 CTCAACGGAGCTGACGAGTAACGCACTAGCGATCATCACATGGCTCGGAAAGATCGCTGA 659
Query 660 CTCTTTCAAACTCCGGAGGCGTTTGTTAACAACTGCAGACGTGGAGGTGGACTTCCACGC 719
||| ||||||||||||||||||||||| || || | ||||||||||||||| |||| ||
Sbjct 660 CTCGTTCAAACTCCGGAGGCGTTTGTTGACTACGGTTGACGTGGAGGTGGACGTCCATGC 719
Query 720 GGGTC-GGAGATTGTTGCAGAGCACGGATTTGAGGAAAGTGGCGGATATTGTGGTGGCGA 778
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 720 GGG-CAGGAGATTGTTGCAGAGCACGGATTTGAGGAAAGTGGCGGATATTGTGGTGGCTA 778
Query 779 AGGATGGTTCAGGGAAGTATAGAACGATAAAG-AGGGCTTTACAAGATGTGCCAGAGAAG 837
|||||||||| ||||||||||||||||||| | ||||||||| | |||||||| ||||||
Sbjct 779 AGGATGGTTCGGGGAAGTATAGAACGATAA-GTAGGGCTTTAGAGGATGTGCCTGAGAAG 837
Query 838 AGTGAGAAGAGGACGATTATATATGTGAAGAAAGGAGTTTATTTTGAGAATGTGAAGGTG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AGTGAGAAGAGGACGATTATATATGTGAAGAAAGGAGTTTATTTTGAGAATGTGAAGGTG 897
Query 898 GAGAAGAAGATGTGGAATGTTATTGTGGTTGGAGATGGCGAGAGCAAGAGTATTGTCTCT 957
||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 898 GAGAAAAAGATGTGGAATGTTGTTGTGGTTGGAGATGGAGAGAGCAAGAGTATTGTCTCT 957
Query 958 GGTAGACTTAATGTCATCGATGGAACTCCCACTTTTAAGACCGCCACATTCGCTGTGTTT 1017
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 958 GGCAGACTTAATGTCATCGATGGAACTCCCACTTTTAAGACTGCCACATTCGCTGTGTTC 1017
Query 1018 GGAAAAGGGTTTATGGCAAGAGACATGGGCTTCATCAACACAGCTGGTCCATCCAAACAT 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GGAAAAGGGTTTATGGCAAGAGACATGGGCTTCATCAACACAGCTGGTCCATCCAAACAC 1077
Query 1078 CAAGCTGTTGCTCTAATGGTAAGCGCAGATCTCACAGCATTTTACCGTTGCACGATGAAC 1137
||||| || || |||||||||||||| |||||| | || ||||||||||| || ||||||
Sbjct 1078 CAAGCCGTAGCGCTAATGGTAAGCGCGGATCTCGCCGCCTTTTACCGTTGTACAATGAAC 1137
Query 1138 GCATACCAAGACACGCTTTACGTTCATGCACAACGCCAATTCTACCGTGAATGCACCATT 1197
||||||||||||||||||||||| || || |||||||||||||||||||| |||||||||
Sbjct 1138 GCATACCAAGACACGCTTTACGTGCACGCTCAACGCCAATTCTACCGTGACTGCACCATT 1197
Query 1198 ATCGGAACAGTAGATTTCATCTTTGGTAACTCAGCTTCAGTTCTCCAAAGCTGCCGGATT 1257
|| |||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1198 ATGGGAACAGTCGATTTCATCTTCGGTAACTCAGCTTCAGTTCTCCAAAACTGCCGGATT 1257
Query 1258 CTCCCTCGCCGACCAATGAAAGGACAACAAAACACAATCACGGCTCAAGGACGTACTGAT 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CTCCCTCGCCGACCAATGAAAGGACAACAAAACACAATCACGGCTCAAGGACGTACTGAT 1317
Query 1318 CCGAACATGAACACAGGAATCTCGATTCACCGTTGTAACATCTCTCCACTCGGTGACCTA 1377
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1318 CCGAACATGAACACAGGAATCTCAATTCACCGTTGTAACATCTCTCCGCTCGGTGACCTA 1377
Query 1378 ACCGATGTTATGACGTTTCTAGGTCGACCATGGAAGAATTTCTCGACGACGGTTATAATG 1437
|||||||||| ||||||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct 1378 ACCGATGTTAAGACGTTTTTAGGTCGACCATGGAAGAATTTCTCGACGACAGTGATAATG 1437
Query 1438 GACTCGTATTTGCATGGTTTTATTGACCGGAAAGGCTGGTTACCGTGGACCGGAGATTCT 1497
||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1438 GACTCGTATTTGCATGGGTTTGTTGACCGGAAAGGTTGGTTACCGTGGACCGGAGATTCG 1497
Query 1498 GCGCCGGATACTATATTTTACGGTGAGTATAAGAATACCGGTC-CTGGTGCATCGACGAA 1556
||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| ||
Sbjct 1498 GCGCCGGATACTATATTTTACGGTGAGTATAAGAATACCGG-CGCTGGTGCGTCGACAAA 1556
Query 1557 GAATAGGGTTAAGTGGAAGGGTTTGAGGTTTCTT-AGTACGAAGGAAGCGAATAGGTTTA 1615
|||||| |||||||||||||| ||| |||||||| | |||||||||||||||||||||||
Sbjct 1557 GAATAGAGTTAAGTGGAAGGGATTGCGGTTTCTTTA-TACGAAGGAAGCGAATAGGTTTA 1615
Query 1616 CGGTGAAACCTTTCATCGACGGTGGAAGATGGCTTCCGGCGACGAAAGTGCCGTTCAGGT 1675
| |||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1616 CCGTGAAAGCTTTCATCGACGGAGGAAGATGGCTTCCGGCCACGAAAGTGCCGTTCAGGT 1675
Query 1676 CCGGTCTCTGA 1686
|||||||||||
Sbjct 1676 CCGGTCTCTGA 1686
> Ahg487283 jgi|Araly1|487283|fgenesh2_kg.6__417__AT5G04960.1
Length=1890
Score = 459 bits (248), Expect = 4e-128
Identities = 711/930 (76%), Gaps = 49/930 (5%)
Strand=Plus/Plus
Query 769 GTGGTGGCGAAGGATGGTTCAGGGAAGTATAGAACGATAAAGAG-GGCTTTA-CAAGATG 826
|||||||| || || || |||||||||||||| ||||| | | | ||||||| | || |
Sbjct 857 GTGGTGGCCAAAGACGGCTCAGGGAAGTATAGGACGAT-AGGTGAGGCTTTAGC-GGAAG 914
Query 827 TGCCA-GAGAAGAGTGAGAAGA-GGACGATTATATATGTGAAGAAAGGAGTTTATTTTGA 884
|| | ||||||| |||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 915 TG-GAGGAGAAGAATGAGAA-ACCTACGATTATATATGTGAAGAAAGGAGTTTATTTGGA 972
Query 885 GAATGTGAAGGTGGAGAAGAAGATGTGGAATGTTATTG-TGGTTGGAGATGG-CGAGAGC 942
|||||| | ||| |||||||||| ||||||||| | | ||||||||||||| | ||||
Sbjct 973 GAATGTTAGGGTTGAGAAGAAGAAATGGAATGTTGT-GATGGTTGGAGATGGAC-AGAGT 1030
Query 943 AAGAGTATTGTCTCTGGTAGACTTAA-TGTCATCGATGGAACTCCCACTTTT-AAGACCG 1000
|||| ||| ||||||| | |||| || | ||||||||||||| ||||| || || ||||
Sbjct 1031 AAGACTATCGTCTCTGCTGGACTCAACT-TCATCGATGGAACACCCACGTTCGAA-ACCG 1088
Query 1001 CCACATTCGCTGTGTTTGGAAAAGGGTTTATGGCAAGAGACATGGGCTTCATCAACACAG 1060
||||||| |||||||||||||| ||||| ||||| || |||||||||||||| || ||||
Sbjct 1089 CCACATTTGCTGTGTTTGGAAAGGGGTTCATGGCTAGGGACATGGGCTTCATTAATACAG 1148
Query 1061 CTGGTCCATCCAAACATCAAGCTGTTGCTCTAATGGTAAGCGCAGATCTCA-CAGCATTT 1119
|||||||| |||| |||||||| || |||||||||||||||||||| || | | ||
Sbjct 1149 CTGGTCCAACCAAGCATCAAGCCGTAGCTCTAATGGTAAGCGCAGA-CTTGTCTGTGTTC 1207
Query 1120 TACC-GTTGCACGATGAACGCATACCAAGACACGCTTTACGTTCATGCACAACGCCAATT 1178
||| || |||| ||| | || | |||||||||| | |||| |||||| ||||| || ||
Sbjct 1208 TACAAGT-GCACTATGGATGCTTTCCAAGACACGATGTACGCTCATGCCCAACGTCAGTT 1266
Query 1179 CTACCGTGAATGCACCATTATCGGAACAGTAGATTTCATCTTTGGTAACTCAGC--TTCA 1236
|||||||| || || ||||||| || ||||| || ||||| ||| | || ||
Sbjct 1267 TTACCGTGATTGTGTTATCCTCGGAACCGTTGATTTTATATTTGGAAACGCTGCGGTT-- 1324
Query 1237 GT-TCTCCAAAGCTGCCG-GATTCTC-CCTCGCCGACCAATGAAAGGACAACAAAACACA 1293
|| | |||||| || | ||| || ||||| || || ||| |||| || || || |||
Sbjct 1325 GTAT-TCCAAAATTGT-GAGAT-CTTGCCTCGTCGTCCTATGGAAGGCCAGCAGAATACA 1381
Query 1294 ATCACGGCTCAAGGACGTACTGATCCGAAC-ATGAACACAGGAATCTCGATTCACCGTTG 1352
|| || ||||| || || | ||||||||| | ||||| |||||||| || ||| |||
Sbjct 1382 ATAACCGCTCAGGGCCGGAAAGATCCGAACCAA-AACACCGGAATCTCTATCCACAATTG 1440
Query 1353 TAAC-ATCTCTCCACTCGG-TGACCTAACCGATGTT-ATGACGTTTCTAGGTCGACCATG 1409
|| | ||| || | || | ||||||||||| | | ||||| ||||| || || ||
Sbjct 1441 TA-CTATCAAGCCTTT-GGATAACCTAACCGATATCCAA-ACGTTCCTAGGCCGGCCTTG 1497
Query 1410 GAAGAATTTCTCGACGACGGTTATAATGGACTCGTATTTGCATGGTTTTATTGACCGGAA 1469
|||| | ||||| || ||||| || ||| | ||||| || | ||||| ||| |||
Sbjct 1498 GAAGGACTTCTCCACAACGGTGATCATGAAGTCGTACATGGACAAATTTATCAACCCGAA 1557
Query 1470 AGGCTGGTTACCGTGGACCGGAGATTCTGCGCCGGATACTATATTTTACGGTGAGTA-TA 1528
||| |||||||||||||| ||| || | || || | || || ||||||| || || |
Sbjct 1558 AGGGTGGTTACCGTGGACAGGATATGCCGCACCATACACCATCTTTTACGCCGAATACTT 1617
Query 1529 AGAATACCGGTCCTGGTGCATCGACGAAGAATAGGGTTAAGTGGAA-GGGTTTGAGGTT- 1586
| ||| |||| || || || ||||| ||||| ||||||||||||| ||||| || |
Sbjct 1618 A-AATTCCGGGCCAGGAGCCTCGACCAAGAACCGGGTTAAGTGGAAAGGGTT-GAAGACG 1675
Query 1587 TCTT-AGTACG-AAGGAAGCGAATAGGTTTACGGTGAAACCTTTCATCGACGGTGG-AAG 1643
|||| | | |||||||| |||| |||||||||||||||||| || ||||| ||
Sbjct 1676 TCTTTAACAAATAAGGAAGCAAATAAGTTTACGGTGAAACCTTTTATAGACGGCAATAAC 1735
Query 1644 ATGGCTT-CCGGCGACGAAAGTGCCGTTCA 1672
||| || ||||| || ||||| |||||||
Sbjct 1736 -TGG-TTGCCGGCAACCAAAGTTCCGTTCA 1763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63229806700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5