BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10720.2
Length=2050
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478407 jgi|Araly1|478407|fgenesh2_kg.3__1108__AT3G10720.2 2793 0.0
Ahg487284 jgi|Araly1|487284|fgenesh2_kg.6__418__AT5G04970.1 1146 0.0
> Ahg478407 jgi|Araly1|478407|fgenesh2_kg.3__1108__AT3G10720.2
Length=1878
Score = 2793 bits (1512), Expect = 0.0
Identities = 1762/1880 (94%), Gaps = 28/1880 (1%)
Strand=Plus/Plus
Query 40 ATGCAAACACTAAACTTCACTTCTTCTCTCTTGTTCTTGTCTTTTATCTTCCTCTCATGT 99
||||||| |||||||||| ||||||| ||||| ||| |||||||| ||||| |||||||
Sbjct 1 ATGCAAAGACTAAACTTCTCTTCTTCACTCTTATTCCTGTCTTTTTTCTTCTTCTCATGG 60
Query 100 GCTCTGCTTATCTCATCACAACAATCTCCATCACAG----C--C--A--------CA--- 140
||| |||| |||||||||||||||||||| |||||| | | | ||
Sbjct 61 GCTTTGCTAATCTCATCACAACAATCTCCGTCACAGCCACCTTCTGACCCTCCGTCACCG 120
Query 141 TT--C---TGAGCCTCCGTCACAGCTACCTTTTGAGCCTCCGGTAGAGTCACCATTCTTC 195
|| | |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTACCTTTTGAGCCTCCGTCGCAGCTACCTTTTGAGCCTCCGGTAGAGTCACCATTCTTG 180
Query 196 CCTCCGTCACAGCCACCAATATTCGTGCCACCGTCACAGCCACCTTCTTTGCCTCCGTCA 255
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 CCTCCGTCACAGCCACCAATATTCGTGCCACCGTCACACCCACCTTCTTTGCCTCCGTCA 240
Query 256 CAGTCTCAGTCACCTTCTCTCGCTTGCAAGTCAACTCCATACCCTAAGCTTTGCCGTACG 315
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 241 CAGTCTCAGTCACCTTCTCTCGCTTGTAAGTCAACTCCATACCCTAAGCTCTGCCGTACG 300
Query 316 ATCCTCAACGCTGTCAAATCCTCACCGTCAGATCCTTACCGTTACGGCAAATTCACTATA 375
||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 301 ATCCTTAACGCTGTTAAATCCTCACCGTCCGATCCTTACCGTTACGGCAAATTCACGATA 360
Query 376 AAGCAATGCCTCAAGCAAGCAAGCCGTCTATCCAAAGTCATCACCAGTTACGCGCGGCGC 435
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 361 AAGCAATGCCTCAAACAAGCAAGCCGTCTCTCCAAAGTCATCACCAGTTACGCGCTCCGC 420
Query 436 GTGGAAAGCAAACCAGGCTCGGCCACGGCCGAGGAAATAGGGGCGGTGGCGGACTGCGGC 495
||| |||||||||||||||| ||||||||||||||||| || || | ||||||||||||
Sbjct 421 GTGAAAAGCAAACCAGGCTCCGCCACGGCCGAGGAAATCGGCGCTCTAGCGGACTGCGGC 480
Query 496 GAGTTATCGGAGCTGAGTGTGAACTACCTTGAAACCGTCACGACGGAGCTTAAGACGGCG 555
|||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 481 GAGTTATCGGAGCTGAGTGTGAACTACCTTGAAATGGTCACGACGGAGCTCAAAACGGCG 540
Query 556 CAGGTGATGACGGCAGCTCTCGTCGAGCATGTGAACAGTCTTCTCAGTGGTGTAGTGACG 615
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 541 CAGGTGATGACGGCAGCTCTAGTCGAGCATGTGAACAGTCTTCTCAGTGGCGTGGTGACG 600
Query 616 AATCAGCAGACGTGTCTTGACGGACTCGTGGAGGCTAAGAGTGGTTTCGCCGCCGCGATT 675
|||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||
Sbjct 601 AATCAGCAGACGTGTCTTGACGGACTCGCGGAGGCGAAGAGTGGATTCGCCGCCGCGATT 660
Query 676 GGTTCGCCGATGGGGAATCTCACTCGCCTTTACAGTATCTCGTTAGGACTTGTGAGCCAC 735
|| |||||||||||||||||||| || ||||||||||||||||| || ||||||||||||
Sbjct 661 GGGTCGCCGATGGGGAATCTCACGCGACTTTACAGTATCTCGTTGGGGCTTGTGAGCCAC 720
Query 736 GCACTTAACCGTAACCTGAAGAGGTTTAAAGCCT-CCAAAGGGAAGATTCTTGGTGGTGG 794
|| ||||| |||||||| ||||||| ||||| || | ||||||||||||||||||||||
Sbjct 721 GCGCTTAATCGTAACCTAAAGAGGTATAAAG-CTGCTAAAGGGAAGATTCTTGGTGGTGC 779
Query 795 GAACTCAACCTATCGCGAACCGCTCGAGACTTTGATTAAGGGTTTACGTAAAACATGCGA 854
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 780 GAACTCAACATATCGCGAACCGCTCGAGACTTTAATTAAGGGTTTACGTAAAACATGCGA 839
Query 855 CAACGACAAAGATTGCCGGAAAACTAGCCGGAACTTAGGGGAGCTAGGTGAGACCAGCGG 914
||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 840 CAACGACAAAGATTGTCGGAAAGCTAGCCGGAACTTAGGGGAGCTAGGTGAGACGAGCGG 899
Query 915 CGGTTCCATCCTCGTGAGTAAAGCAGTGATCGTCGGTCCGTTCAAATCCGACAACTTCAC 974
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 900 TGGTTCCATCCTCGTGAGTAAAGCAGTGATCGTCGGCCCGTACAAATCCGACAACTTCAC 959
Query 975 AACCATCACCGATGCTATTGCAGCCGCACCTAATAACACTAGACCAGAGGATGGTTACTT 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AACCATCACCGATGCTATTGCAGCCGCACCTAATAACACTAGACCAGAGGATGGTTACTT 1019
Query 1035 TGTTATCTACGCAAGAGAAGGTGTCTATGAAGAATATATTGTTGTTCCCATCAACAAAAA 1094
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TGTCATCTACGCAAGAGAAGGTGTCTATGAAGAATATATTGTTGTTCCCATCAACAAAAA 1079
Query 1095 GAACTTAATGCTTATGGGAGATGGGATCAATAAGACGATTATTACAGGGAACCATAATGT 1154
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1080 GAACTTAATGCTTATTGGAGATGGGATCAATAAGACGATTATTACTGGGAACCATAACGT 1139
Query 1155 TGTTGATGGTTGGACTACGTATAATTGCTCGAGCTTCGCTGTGGTTGGAGAGCGGTTCAT 1214
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1140 TGTTGATGGTTGGACAACGTATAATTGCTCGAGCTTTGCTGTGGTTGGAGAGCGGTTCAT 1199
Query 1215 GGCGGTTGATGTTACATTCAGAAACACAGCCGGACCTGAAAAACATCAGGCAGTGGCTTT 1274
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1200 GGCGGTTGATGTTACATTCAGAAACACAGCCGGACCTGAAAAACATCAGGCTGTGGCTTT 1259
Query 1275 GAGGAACAATGCGGAAGGATCAAGTTTTTATCGGTGTAGTTTTGAAGGCTATCAAGATAC 1334
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GAGGAACAATGCAGAAGGATCGAGTTTTTATCGGTGTAGTTTTGAAGGCTATCAAGATAC 1319
Query 1335 TCTCTACGTCCATTCTCTTAGACAATTCTATCGCGAATGCGATATATATGGTACCGTCGA 1394
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1320 TCTCTACGTCCATTCTCTCAGACAATTCTATCGTGAATGCGATATATATGGTACCGTCGA 1379
Query 1395 TTTTATATTCGGAAATGCAGCCGCAATTTTTCAAAACTGCAACATATATGCTCGAAAACC 1454
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1380 TTTTATATTCGGAAATGCAGCCGCAATTTTCCAAAATTGCAACATATATGCTCGAAAACC 1439
Query 1455 GATGGCCAAGCAAAAGAACGCAATAACAGCGCATGGAAGACTCGATCCAAACCAGAATAC 1514
|||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 1440 AATGGCCAAGCAAAAGAACGCGATAACTGCTCATGGAAGACTCGATCCAAACCAGAATAC 1499
Query 1515 CGGAATCTCTATCATCAATTGTACAATAAAAGCCGCCCCAGATCTTGCAGCTGAGCCTAA 1574
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1500 CGGAATCTCTATCATCAATTGTACAATAAAAGCCGCCCCAGATCTTGCAGCCGAGCCTAA 1559
Query 1575 ATCTGCCATGACATTCTTAGGGAGACCGTGGAAGCCATACTCAAGGACGGTTTTCATGCA 1634
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1560 ATCAGCCATGACATTCTTAGGGAGACCATGGAAGCCCTACTCAAGGACGGTTTTCATGCA 1619
Query 1635 ATCATACATTAGTGACATTGTTCAACCAGTCGGATGGCTCGAATGGAACGGTACAATTGG 1694
|||||| |||||||||||||| |||||||| |||||||| |||||||||||||||| |||
Sbjct 1620 ATCATATATTAGTGACATTGTCCAACCAGTTGGATGGCTGGAATGGAACGGTACAACTGG 1679
Query 1695 ACTAGACACAATCTACTACGGTGAGTATAG-TAACTTTGGACCAGGTGCTAACACGAACC 1753
||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||
Sbjct 1680 ACTAGACACAATCTACTACGGTGAGTA-CGATAACTTTGGACCAGGGGCTAACACGAACC 1738
Query 1754 AGAGAGTGCAGTGGTTAGGGTACAATTTATTGAACTTGGCAGAAGCCATGAACTTCACGG 1813
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1739 AGAGAGTGCAGTGGTTAGGGTATAATTTATTGAACTTGGCAGAAGCCATGAACTTCACGG 1798
Query 1814 TCTACAACTTCACCATGGGAGATACATGGTTGCCTCAAACCGATATTCCTTTCTATGGTG 1873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 TCTACAACTTCACCATGGGAGATACATGGTTGCCTCAAACCGATATTCCTTTCTATGGTG 1858
Query 1874 GTTTGCTTAGCAAAGAATGA 1893
|||||||| |||||||||||
Sbjct 1859 GTTTGCTTCGCAAAGAATGA 1878
> Ahg487284 jgi|Araly1|487284|fgenesh2_kg.6__418__AT5G04970.1
Length=1979
Score = 1146 bits (620), Expect = 0.0
Identities = 1317/1650 (80%), Gaps = 62/1650 (4%)
Strand=Plus/Plus
Query 277 GCTTGCAAGTCAACTCCATACCCTAAGCTTTGCCGTACGATCCTCAACGCTGTCAAATCC 336
||||| || || ||||| ||||| ||||| ||||| |||||||| |||||||||||||
Sbjct 273 GCTTGTAAATCCACTCCTTACCCGAAGCTCTGCCGCACGATCCTTTCCGCTGTCAAATCC 332
Query 337 TCACCGTCAGATCCTTACCGTTACGGCAAA-TTCACTAT-AAAGCAATGCCTCAAGCAAG 394
|||||||| ||||||||||||||||| ||| ||||| || ||| ||||||||||| ||||
Sbjct 333 TCACCGTCCGATCCTTACCGTTACGG-AAAGTTCACAATGAAA-CAATGCCTCAAACAAG 390
Query 395 CAAGCCGTCTATCCAAAGTCATC-ACCAG-TTACGCGCGGCGCGTGGAAAGCA--AACCA 450
| | || || |||||||||||| ||| | || || | ||||||| ||| | | |||
Sbjct 391 CTCGTCGCCTCTCCAAAGTCATCAACC-GCTT-TGCCCATCGCGTGG-AAG-ATGATCCA 446
Query 451 GGCT-CGGCCACGGCCGAGGAAAT-AGGGGCGGTGGCGGACTGCGGCGAGTTATCGGAGC 508
|| | || | |||| || || | | | |||||||| || ||||||||| || | |||
Sbjct 447 GG-TGCGTCGACGGTGGAAGAGGTCA-GTGCGGTGGCTGATTGCGGCGAGCTAGCACAGC 504
Query 509 TGAGTG-TGAACTACCTTGAAACCGTCAC-GACGGAGCT-TAAGACGGCGCAGGTGATGA 565
| || | || | ||||| ||||| || || || |||||| ||| | ||| || ||||||
Sbjct 505 TTAGCGTTG-ATTACCTCGAAACGGTTACGGA-GGAGCTGAAAG-CAGCGGAGCTGATGA 561
Query 566 CGGCAGCTCTCGTCGAGCATGTGAAC-AGTCTTCTCAGTGGTGTAGTGACGAATCAGCAG 624
|||| || ||||| || | ||| || ||||||||| |||| || ||||| || |||||
Sbjct 562 CGGCCGCCCTCGTTGATCGTGT-TACGAGTCTTCTCGGTGGCGTTGTGACTAACCAGCAA 620
Query 625 ACGTGTCTTGACGGACTCGTGGAGGCTAAGAG-TGGTTTCGCCG-CCGCGATTGGTTCGC 682
||||| || ||||| || ||||| |||||||| ||||| | || | |||||||| |||
Sbjct 621 ACGTGCCTCGACGGTCTTGTGGACGCTAAGAGCGGGTTT-G-CGACGGCGATTGGAACGC 678
Query 683 CGATGGGGAATCTCACTCGCCTTTACAGTATCTCGTTAGGACTTGTGAGCCACGCACTTA 742
|| ||||||||||||| ||||| || ||| | |||||||| |||||||| ||||| ||||
Sbjct 679 CGTTGGGGAATCTCACGCGCCTCTATAGTGTGTCGTTAGGGCTTGTGAGTCACGCGCTTA 738
Query 743 ACCGTAACCTGAAGAGGTTTAAAGCCTCCAAAGGGAAGATTC-TTGGTGGTGGGAACTCA 801
||||||| |||||||||| ||||| ||||| ||||| | || |||||||||| ||| |
Sbjct 739 ACCGTAATCTGAAGAGGTATAAAGGGTCCAAGGGGAA-AATCTTTGGTGGTGGTAAC-AA 796
Query 802 A-CC-TATCGCGAACCGCTCGAGACTTTGATTAAGGGTTTACGTAAAACATGCGACAACG 859
| || | ||| ||||| ||||||||||||||||||| |||||| |||||||||||||| |
Sbjct 797 ACCCGT-TCGTGAACCTCTCGAGACTTTGATTAAGGTTTTACGCAAAACATGCGACAA-G 854
Query 860 A-CAAAGATTGCCGGAAAACTAG-CCGGAACTTAGGGGAGCTAGGTGAGACCAGCGGCGG 917
| ||| ||||| |||||| || | | | || ||||| |||||||| ||||| ||||| ||
Sbjct 855 AGCAAGGATTGTCGGAAAGCT-GACAGAAATTTAGGTGAGCTAGGAGAGACGAGCGGTGG 913
Query 918 TTCCATCCTCGTGAGTAAAGCAGTGATCGTCGGTCCGT-TCAAATCCGACAACTTCACAA 976
|| |||||||| || ||||||| | ||||||||| | | ||| |||| |||||| | |
Sbjct 914 CTCGATCCTCGTAAGGGAAGCAGTAACCGTCGGTCCATATGAAA-CCGATAACTTCTCTA 972
Query 977 CCATCACCGATGCTATTGCAGCCGCACCTAATAACACTA-GACCAGAGGATGGTTACTTT 1035
|||| || || || | || ||||||||||| ||||| | || ||| | || |||||
Sbjct 973 CCATAACTGAGGCCGTCGCTGCCGCACCTAACAACAC-ATTCCCGGAGCAAGGCTACTTC 1031
Query 1036 GTTATCTACGCAAGAGAAGGTGTCTATGAAGAATATATTGTT-GTTCCCATCAACAAAAA 1094
|| ||||| ||||| | |||| | || ||||||||| ||||| ||| || || |||||
Sbjct 1032 GTAATCTATGCAAGGGCAGGTCTTTACGAAGAATATGTTGTTATTTCAAAT-AA-AAAAA 1089
Query 1095 -GAACTTAATGCTTATGGGAGATGGGATCAATAAGACGATTATTACAGGGAACCATAATG 1153
|||| | |||||||| ||||||||||||||||| || || ||| | || ||||| | |
Sbjct 1090 GGAACATCATGCTTATTGGAGATGGGATCAATAAAACTATCATTTCTGGAAACCACAGTT 1149
Query 1154 TTGTTGATGGTTGGACTACGTATAATTGC-TCGAGCTTCGCTGTGGTTGGAGAGCGGTTC 1212
|| ||||||||||||| || ||||||| | || | ||| || ||||| ||||| || ||
Sbjct 1150 TTATTGATGGTTGGACGACTTATAATT-CTTCAACCTTTGCGGTGGTCGGAGACCGATTT 1208
Query 1213 ATGGCGGTTGATGTTACATTCAGAAACACAGCCGGACCTGAAAAACATCAGGCAGTGGCT 1272
| || |||||||| |||||| |||||||||| ||||| || ||||| || || |||||
Sbjct 1209 GTTGCAGTTGATGTAACATTCCGAAACACAGCTGGACCAGAGAAACACCAAGCCGTGGCC 1268
Query 1273 TTGAGGAACAATGCGGAAGGATCAAGTTTTTATCGGTGTAGTTTTGAAGGCTATCAAGAT 1332
| || ||||||||||| || |||| |||||||| ||||||||||||||||||||||||
Sbjct 1269 GTAAGAAACAATGCGGATGGGTCAACATTTTATCGATGTAGTTTTGAAGGCTATCAAGAT 1328
Query 1333 ACTCTCTACGTCCATTCTCTT-AGACAATTCTATCGCGAATGCGATATATATGGTACCGT 1391
||||| ||||| |||||| || ||||| |||||||| ||||| ||||||||||| ||| |
Sbjct 1329 ACTCTTTACGTTCATTCT-TTAAGACAGTTCTATCGTGAATGTGATATATATGGGACCAT 1387
Query 1392 CGATTTTATATTCGGAAATGCAGCCGCAATTTTTCAAAACTGCAACATATATGCTCGAAA 1451
|||||||||||||||||||| || ||||| |||||||| |||||||||||||| |||||
Sbjct 1388 AGATTTTATATTCGGAAATGCGGCTGCAATCTTTCAAAATTGCAACATATATGCCCGAAA 1447
Query 1452 ACCGATGGCCAAGCAAAAGAACGCAATAACAGCGCATGGAAG-ACTCGATCCAAACCAGA 1510
||||||||| || || ||||| ||| | ||||| |||||||| || ||||||||||||||
Sbjct 1448 ACCGATGGCAAATCAGAAGAATGCAGTGACAGCCCATGGAAGAAC-CGATCCAAACCAGA 1506
Query 1511 ATACCGGAATCTCTATCATCAATTGTACAATAAAAGCCGCCCCAGATCTTGCAGCTGAGC 1570
| || |||||||| ||||| |||||||| ||| ||| ||||| || || || ||||| |
Sbjct 1507 AAACTGGAATCTCCATCATTAATTGTACTATAGGAGCTGCCCCGGACCTCGCGGCTGACC 1566
Query 1571 CTAAATCTG-CCATGACATT-CTTAGGGAGACCGTGGAAGCCATACTCAAGGACGGTTTT 1628
| || || | |||||||||| ||| ||| |||| |||||||| ||||| |||||||| |
Sbjct 1567 CCAACTC-GACCATGACATTCCTT-GGGCGACCATGGAAGCCTTACTCGAGGACGGTCTA 1624
Query 1629 CATGCAATCATACATTAGTGACATTGTTCAACCAGTCGGATGGCTCGAATGGAACGGTAC 1688
||| ||||||||||| || || |||| ||||| || || ||||| || ||||| || ||
Sbjct 1625 CATACAATCATACATCAGCGATGTTGTCCAACCCGTTGGGTGGCTAGAGTGGAATGGGAC 1684
Query 1689 AATTGGACTAGACACAATCTACTACGGTGAGTATAG-TAACTTTGGACCAGGTGCTAACA 1747
|| || |||||||| |||| ||| ||||| ||| | ||||||||||| || ||| |||
Sbjct 1685 AACCGGGCTAGACACGATCTCCTATGGTGAATAT-GACAACTTTGGACCGGGGGCTGACA 1743
Query 1748 CGAA-CCAGAGAGTGCAGTGGTTAGGGTACAATTTATTGAACTTGGCAGAAGCCATGAAC 1806
| || | || || || |||| ||| || | ||||||||||||||||||||||||||
Sbjct 1744 C-AAGTAAAAGGGTCCAATGGTCAGGATATAGCCTATTGAACTTGGCAGAAGCCATGAAC 1802
Query 1807 TTCACGGTCTACAACTTCACCATGGGAGATACATGGTTGCCTCAAACCGATATTCCTTTC 1866
||||| || || |||||||| ||||||| || ||||||||||| ||||| ||||| |||
Sbjct 1803 TTCACCGTATATAACTTCACTTTGGGAGACACTTGGTTGCCTCAGACCGACATTCCCTTC 1862
Query 1867 TATGGTGGTTTGCTT-AGCAAAGAATGAAA 1895
|| || ||||||||| | || ||||||||
Sbjct 1863 TACGGCGGTTTGCTTCA-CACCGAATGAAA 1891
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77094655880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5