BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10730.1
Length=1756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478408 jgi|Araly1|478408|fgenesh2_kg.3__1109__AT3G10730.1 2209 0.0
Ahg497464 jgi|Araly1|497464|fgenesh2_kg.532__1__AT3G10730.1 2169 0.0
Ahg939904 jgi|Araly1|939904|scaffold_600448.1 728 0.0
> Ahg478408 jgi|Araly1|478408|fgenesh2_kg.3__1109__AT3G10730.1
Length=1539
Score = 2209 bits (1196), Expect = 0.0
Identities = 1434/1544 (93%), Gaps = 35/1544 (2%)
Strand=Plus/Plus
Query 155 AAGATCATGTCGGCGTCAACGGTGTCAATCACCGCTAGTCCT---AGGACAATAAGGCGG 211
|||||||||||||| ||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 1 AAGATCATGTCGGCATCAACGGTGTCAATCACCGCTAGTCCTACGAGGGCAATTAGGCGG 60
Query 212 ACGCCGGTTCTCTCCGGTGAGAAGAAATCTAATTTTGATTTCCCGCCGAGCGAATCTCAT 271
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 61 ACGCCGGTTCTCTCCGGTGAGAATAAATCCAATTTTGATTTCCCGCCGAGCGAATCTCAT 120
Query 272 GCCAATGCGGCAATTGGAGAGTCGTCTGCTGGTACGAACAAGGATCTGATTCGCGCCGAG 331
||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct 121 GCCAATGCGGCAATTGGAGAGTCTTCCGCTGGTACGAACAAGGATCTGATTCGCTCCGAG 180
Query 332 GCTGCCGGTGAGAGATCCAACACCTACGACGTAGGTCCGGTGACAAGGAAATCAGGATCC 391
||||||| ||||||||| |||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct 181 GCTGCCGCTGAGAGATCTAACACCTACGACGTCGGTCCTGTGACTAGGAAATCGGGATCC 240
Query 392 ACCGCGACGGGGACTAATACAACCACCACGCAGCGTCGGACGCGGAAGTCTCAGGGGAAT 451
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 ACCGCGACGGGGACTAATACAACCACCACGCAGCGTCGAACGCGGAAGTCTCAGGGGAAT 300
Query 452 AAGATAGAT-AGAGGGAAATGGAAGACAGTGGTTAGGGTATTCGCGAAGCAATTTGGGGC 510
|||| |||| || ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGACAGATAAG-GGGCAGTGGAAGACAGTGGTTAGGGTATTCGCGAAGCAATTTGGGGC 359
Query 511 TCTTTTGTTACTTGTTGGATTGATTCAGTTGATTAGGAAATTGACTTTGAAGGATTCGTC 570
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 TCTTTTGTTACTTGTTGGGTTGATTCAATTGATTAGGAAATTGACTTTGAAGGATTCGTC 419
Query 571 TCTGTCTTCTTCGAATTTCCCAATTGAAACGGAAATGGTGCTTTCGGAATTGGAGAGTCG 630
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCTATCTTCTTCGAATTTCCCAATTGAAACGGAAATGGTGCTTTCGGAATTGGAGAGTCG 479
Query 631 GATTTCTGCAGTTGATGGTTTGGTGAAGACTACGACGAAGATGATGCAGGTTCAAGTTGA 690
|||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 480 GATTTCGGCTGTTGATGGTTTGGTAAAGACTACTACGAAGATGATGCAGGTTCAAGTTGA 539
Query 691 GTTTCTTGATAAGAAGATGGATAGTGAATCAAGAGCATTGAGGCAGACGATAGATTCCAC 750
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 540 ATTTCTTGATAAGAAGATGGAAAGCGAATCAAGAGCATTGAGGCAGACGATAGATTCCAC 599
Query 751 ATCTTCTGTGTTACATAGTGAGTTGAAGAAGGTAGAGTCTAAGACAGAGAGGTTACAGGT 810
|||||||| ||| || |||| |||||||||||||||||||||||| ||||| || |||||
Sbjct 600 ATCTTCTGCGTTGCAGAGTGGGTTGAAGAAGGTAGAGTCTAAGACGGAGAGATTGCAGGT 659
Query 811 TTCTGTAGATGAGTTAAATGCTAAACCTTTGGTGTCTAGAGAGGAGTTAGAGAGAGTTTA 870
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 TTCCGTAGATGAGTTAAATGCTAAACCTTTGGTGTCTAGAGAGGAATTAGAGAGAGTTTA 719
Query 871 CGAGGAGTTGAAGAAGGGTAAGGTCGGTGATTCTGATGTTAACATTGATAAACTGAGGGC 930
||||||||||||||||||||||| ||||||||||| ||||||||||||| || |||||||
Sbjct 720 CGAGGAGTTGAAGAAGGGTAAGGCCGGTGATTCTGCTGTTAACATTGATGAATTGAGGGC 779
Query 931 TTATGCTCGTGACATAGTGGAGAAAGAGATAGGGAAA-CATGTTGCAGATGGCCTTGGTC 989
||||||||||||| |||||||||||||||| ||||| |||| ||| ||||||||||| |
Sbjct 780 TTATGCTCGTGACGTAGTGGAGAAAGAGAT-TGGAAAGCATGCTGCTGATGGCCTTGGGC 838
Query 990 GAGTAGATTATGCGTTAGCGTCTGGTGGAGCTTTTGTAATGGGGCATTCGGATCCGTTTC 1049
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 839 GAGTAGACTATGCGTTAGCGTCTGGTGGGGCTTTTGTAATGGGGCATTCGGATCCGTTTC 898
Query 1050 TTGTTGGAAATGGGCGTAATTGGTTTGGGACAAGCAGGAGACGGGTTCATAGCAAAGCGG 1109
|||||||||||||| ||| ||||||||||||||||||| | |||||||||||||||||||
Sbjct 899 TTGTTGGAAATGGGGGTATTTGGTTTGGGACAAGCAGGCGGCGGGTTCATAGCAAAGCGG 958
Query 1110 TTAAGATGTTAACTCCGAGTTTCGGGGAGCCTGGACAGTGTTTTCCTCTGAAAGGAAGCA 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TTAAGATGTTAACTCCGAGTTTCGGGGAGCCTGGACAGTGTTTTCCTCTGAAAGGAAGCA 1018
Query 1170 ATGGATATGTTCTAGTCAGGCTAAGAGCACCAATAATTCCAGAAGCTGTTACTTTGGAAC 1229
|||| |||||||||||||||||||||||||||||||||||||| || ||||| ||||| |
Sbjct 1019 ATGGCTATGTTCTAGTCAGGCTAAGAGCACCAATAATTCCAGAGGCCGTTACCTTGGAGC 1078
Query 1230 ATGTCTCTAAGGCTGTAGCATATGACAGATCGAGCGCCCCAAAGGATTGCCGTGTATCAG 1289
|||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1079 ATGTCTCTGAGGCTGTAGCGTATGACAGATCGAGCGCCCCAAAGGATTGCCGGGTATCAG 1138
Query 1290 GATGGCTAGGTGACATAGATATGGAGACTGAGACAATGCCCCTTCTTACAGAATTCAGTT 1349
||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||
Sbjct 1139 GATGGCTAGGTGACATAGATATGGAGACTGAAACCATGCCCATTCTTACAGAATTCAGTT 1198
Query 1350 ACGACTTAGACAGGTCCAATGCACAGACATTCGACATTGCAGACTCTGCTCACTCAGGAC 1409
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 1199 ACGACTTAGACAGGTCCAATGCACAGACATTCGACATTGCAGAGTCTGCTCATTCGGGAC 1258
Query 1410 TTGTCAACACTGTCAGGCTAGACTTCAATTCCAACCATGGAAGCTCTTCACACACTTGCA 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTGTCAACACTGTCAGGCTAGACTTCAATTCCAACCATGGAAGCTCTTCACACACTTGCA 1318
Query 1470 TCTACCGCTTCAGGGTTCATGGCCGTGAACTAGACTCAGTCTCTGTTGCTCATGCTTGAT 1529
||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct 1319 TCTACCGCTTCAGGGTTCATGGCTGTCAACTAGACTCAGTCTCTGTTGTTCATGCTTGAT 1378
Query 1530 CTGAAAGTCCACGTCAAACTTTTCTTCTCTTTGTAACATTCCCTCTAATAGATATCTCTC 1589
||||| |||||||| ||||||||||||| |||||||||| | | | | | | | |
Sbjct 1379 CTGAA-GTCCACGTGAAACTTTTCTTCTATTTGTAACAT-C--T-T--T---T-T-T-T- 1424
Query 1590 TTCtttttttGTGTTAGTTTATGTGGTGGGAAAGCTTCTCTTAGTCTGTAATCAGAATCA 1649
|| || | ||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1425 TT--------GT-T-AGTTTGTGTGGTGGGAAAGCTTCT---AGTCTGTAATCAGAATCA 1471
Query 1650 TTTGGTTGTATTCGTGATTATTAGCTT-CAAATCTGTTTTGGTT 1692
|||||||||||||||| |||||| || ||||||||||||||||
Sbjct 1472 TTTGGTTGTATTCGTGCTTATTATTTTTCAAATCTGTTTTGGTT 1515
> Ahg497464 jgi|Araly1|497464|fgenesh2_kg.532__1__AT3G10730.1
Length=1495
Score = 2169 bits (1174), Expect = 0.0
Identities = 1415/1526 (93%), Gaps = 38/1526 (2%)
Strand=Plus/Plus
Query 155 AAGATCATGTCGGCGTCAACGGTGTCAATCACCGCTAGTCCT---AGGACAATAAGGCGG 211
|||||||||||||| ||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 1 AAGATCATGTCGGCATCAACGGTGTCAATCACCGCTAGTCCTACGAGGGCAATTAGGCGG 60
Query 212 ACGCCGGTTCTCTCCGGTGAGAAGAAATCTAATTTTGATTTCCCGCCGAGCGAATCTCAT 271
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 61 ACGCCGGTTCTCTCCGGTGAGAATAAATCCAATTTTGATTTCCCGCCGAGCGAATCTCAT 120
Query 272 GCCAATGCGGCAATTGGAGAGTCGTCTGCTGGTACGAACAAGGATCTGATTCGCGCCGAG 331
||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct 121 GCCAATGCGGCAATTGGAGAGTCTTCCGCTGGTACGAACAAGGATCTGATTCGCTCCGAG 180
Query 332 GCTGCCGGTGAGAGATCCAACACCTACGACGTAGGTCCGGTGACAAGGAAATCAGGATCC 391
||||||| ||||||||| |||||||||||||| ||||| ||||| |||||||| ||||||
Sbjct 181 GCTGCCGCTGAGAGATCTAACACCTACGACGTCGGTCCTGTGACTAGGAAATCGGGATCC 240
Query 392 ACCGCGACGGGGACTAATACAACCACCACGCAGCGTCGGACGCGGAAGTCTCAGGGGAAT 451
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 ACCGCGACGGGCACTAATACAACCACCACGCAGCGTCGAACGCGGAAGTCTCAGGGGAAT 300
Query 452 AAGATAGAT-AGAGGGAAATGGAAGACAGTGGTTAGGGTATTCGCGAAGCAATTTGGGGC 510
|||| |||| || ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGACAGATAAG-GGGCAGTGGAAGACAGTGGTTAGGGTATTCGCGAAGCAATTTGGGGC 359
Query 511 TCTTTTGTTACTTGTTGGATTGATTCAGTTGATTAGGAAATTGACTTTGAAGGATTCGTC 570
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 TCTTTTGTTACTTGTTGGATTGATTCAATTGATTAGGAAATTGACTTTGAAGGATTCGTC 419
Query 571 TCTGTCTTCTTCGAATTTCCCAATTGAAACGGAAATGGTGCTTTCGGAATTGGAGAGTCG 630
||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCTATCTGCTTCTAATTTCCCAATTGAAACGGAAATGGTGCTTTCGGAATTGGAGAGTCG 479
Query 631 GATTTCTGCAGTTGATGGTTTGGTGAAGACTACGACGAAGATGATGCAGGTTCAAGTTGA 690
|||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 480 GATTTCGGCTGTTGATGGTTTGGTAAAGACTACTACGAAGATGATGCAGGTTCAAGTTGA 539
Query 691 GTTTCTTGATAAGAAGATGGATAGTGAATCAAGAGCATTGAGGCAGACGATAGATTCCAC 750
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 540 ATTTCTTGATAAGAAGATGGAAAGCGAATCAAGAGCATTGAGGCAGACGATAGATTCCAC 599
Query 751 ATCTTCTGTGTTACATAG-TGAGTTGAAGAAGGTAGAGTCTAAGACAGAGAGGTTACAGG 809
|||||||||||| || || || |||||||||||||||||||||||| ||||| || ||||
Sbjct 600 ATCTTCTGTGTTGCAGAGTTG-GTTGAAGAAGGTAGAGTCTAAGACGGAGAGATTGCAGG 658
Query 810 TTTCTGTAGATGAGTTAAATGCTAAACCTTTGGTGTCTAGAGAGGAGTTAGAGAGAGTTT 869
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 659 TTTCCGTAGATGAGTTAAATGCTAAACCTTTGGTGTCTAGAGAGGAATTAGAGAGAGTTT 718
Query 870 ACGAGGAGTTGAAGAAGGGTAAGGTCGGTGATTCTGATGTTAACATTGATAAACTGAGGG 929
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 719 ACGAGGAGTTGAAGAAGGGTAAGGTCGGTGATTCTGATCTTAACATTGATGAATTGAGGG 778
Query 930 CTTATGCTCGTGACATAGTGGAGAAAGAGATAGGGAAA-CATGTTGCAGATGGCCTTGGT 988
|||||||||||||| |||||||||||||||| ||||| |||| || |||||||||||
Sbjct 779 CTTATGCTCGTGACGTAGTGGAGAAAGAGAT-TGGAAAGCATGCCGCTGATGGCCTTGGC 837
Query 989 CGAGTAGATTATGCGTTAGCGTCTGGTGGAGCTTTTGTAATGGGGCATTCGGATCCGTTT 1048
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 838 CGAGTAGACTATGCGTTAGCGTCTGGTGGGGCTTTTGTAATGGGGCATTCGGATCCGTTT 897
Query 1049 CTTGTTGGAAATGG-GCGTAATTGGTTTGGGACAAGCAGGAGACGGGTTCATAGCAAAGC 1107
|||||||||| ||| | ||||||||||| ||||||||||| | |||||||||||||||||
Sbjct 898 CTTGTTGGAAGTGGAG-GTAATTGGTTTCGGACAAGCAGGCGGCGGGTTCATAGCAAAGC 956
Query 1108 GGTTAAGATGTTAACTCCGAGTTTCGGGGAGCCTGGACAGTGTTTTCCTCTGAAAGGAAG 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GGTTAAGATGTTAACTCCGAGTTTCGGGGAGCCTGGACAGTGTTTTCCTCTGAAAGGAAG 1016
Query 1168 CAATGGATATGTTCTAGTCAGGCTAAGAGCACCAATAATTCCAGAAGCTGTTACTTTGGA 1227
|||||| |||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 1017 CAATGGCTATGTTCTAGTCAGGCTAAGAGCACCAATAATTCCAGAGGCCGTTACCTTGGA 1076
Query 1228 ACATGTCTCTAAGGCTGTAGCATATGACAGATCGAGCGCCCCAAAGGATTGCCGTGTATC 1287
||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1077 GCATGTCTCTGAGGCTGTAGCGTATGACAGATCGAGCGCCCCAAAGGATTGCCGGGTATC 1136
Query 1288 AGGATGGCTAGGTGACATAGATATGGAGACTGAGACAATGCCCCTTCTTACAGAATTCAG 1347
||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||
Sbjct 1137 AGGATGGCTAGGTGACATAGATATGGAGACTGAAACCATGCCCATTCTTACAGAATTCAG 1196
Query 1348 TTACGACTTAGACAGGTCCAATGCACAGACATTCGACATTGCAGACTCTGCTCACTCAGG 1407
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 1197 TTACGACTTAGACAGGTCCAATGCACAGACATTCGACATTGCAGAGTCTGCTCATTCGGG 1256
Query 1408 ACTTGTCAACACTGTCAGGCTAGACTTCAATTCCAACCATGGAAGCTCTTCACACACTTG 1467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 ACTTGTCAACACTGTCAGGCTAGACTTCAATTCCAACCATGGAAGCTCTTCACACACTTG 1316
Query 1468 CATCTACCGCTTCAGGGTTCATGGCCGTGAACTAGACTCAGTCTCTGTTGCTCATGCTTG 1527
||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 1317 CATCTACCGCTTCAGGGTTCATGGCTGTCAACTAGACTCAGTCTCTGTTGTTCATGCTTG 1376
Query 1528 ATCTGAAAGTCCACGTCAAACTTTTCTTCTCTTTGTAACATTCCCTCTAATAGATATCTC 1587
||||||| |||||||| ||||||||||||| |||||||||| | | | | | | |
Sbjct 1377 ATCTGAA-GTCCACGTGAAACTTTTCTTCTATTTGTAACAT-C--T-T--T---T-T-T- 1423
Query 1588 TCTTCtttttttGTGTTAGTTTATGTGGTGGGAAAGCTTCTCTTAGTCTGTAATCAGAAT 1647
| || || | ||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1424 T-TT--------GT-T-AGTTTGTGTGGTGGGAAAGCTTCT---AGTCTGTAATCAGAAT 1469
Query 1648 CATTTGGTTGTATTCGTGATTATTAG 1673
|||||||||||||||||| |||||||
Sbjct 1470 CATTTGGTTGTATTCGTGCTTATTAG 1495
> Ahg939904 jgi|Araly1|939904|scaffold_600448.1
Length=1473
Score = 728 bits (394), Expect = 0.0
Identities = 1093/1419 (77%), Gaps = 94/1419 (7%)
Strand=Plus/Plus
Query 161 ATGTCGGCGTCAACGGTGTCAATCACCGCTAGT-C--CTAG-GAC-AATAAGGCGGACGC 215
|||||||| ||||||||||| |||||||||| | | | | | | | | || |||||||
Sbjct 22 ATGTCGGCATCAACGGTGTCGATCACCGCTAATACGGC-GGCGGCGACT-AGACGGACGC 79
Query 216 CGGTTCTCTCCGGTGAGAAGAAATCTAATTTTGATTTCCCGCCGAGCGAATCTCATGCCA 275
|| |||| ||||| ||||| ||||| || ||||||| ||||| |||||||| | ||| |
Sbjct 80 CGATTCTTTCCGGAGAGAAAAAATCAAACTTTGATTACCCGCAAAGCGAATCGCTTGCGA 139
Query 276 A---T-GCGGCAATTGGAGAGTCGTCTGCTGGTACGAACAAG-GATCTGATTCGCGCCGA 330
| | | || |||| | | | | | |||||||| | || ||||||| |||| ||
Sbjct 140 ACGGTGGTGG-TGTTGG-G-GAAG-CCGGTGGTACGAGC-AGAGATCTGAGCCGCGGTGA 194
Query 331 GGCTGCCGGTGAGAGATCCAACAC-CT-ACGACGTAGGTCCGGTGACAAGGAAATCAGGA 388
|||| || ||| | | | ||| | | || | ||||| ||||| |||| || ||
Sbjct 195 GGCTATCGTTGATCGCT-C-TCACGGTCAAGATTTGGGTCCTGTGACGAGGAGGTCTGGT 252
Query 389 TCCACCGCGACGGGGACTAATACAACCACCACGCAGCGTCGGACGCGGAA-GTCT-CAGG 446
||| | ||||||||||||||||| |||||||||||||| || |||||||| || | | |
Sbjct 253 TCCGCTGCGACGGGGACTAATACCACCACCACGCAGCGCCGTACGCGGAAGGT-TGC-GA 310
Query 447 GGAATAAG-ATAGATAGAGGGAAATGGAAGACAGTGGTTAGGGTATTCGCGAAGCAATTT 505
|||| | || | || | |||||||||||||| ||| ||||||| ||||| ||
Sbjct 311 CTCCTAAGCCT-GAGAAAGCGCGGTGGAAGACAGTGGTGAGGATATTCGCAAAGCAGCTT 369
Query 506 GGGGCTCTTTTG-TTACTTGTTGGATTGATTCAGTTGATTAGGAA-ATTGACTT-TGAAG 562
||||| |||||| | | ||||||| || ||||| |||| ||||| | ||| || | |||
Sbjct 370 GGGGCACTTTTGATCA-TTGTTGGGTTAATTCAATTGACGAGGAAGA-TGA-TTCTCAAG 426
Query 563 GATTCGTCTCTGTCTTCTTCGAATTTC--CCAATTGAAACGGAAATGGTGCTTTCGGAAT 620
| |||||||| ||| ||| || ||||| | | |||||||| |||| | |||||| ||
Sbjct 427 GCTTCGTCTCCGTCCTCTCCG-ATTTCTTCTTA-TGAAACGGGGATGGCGTTTTCGGGAT 484
Query 621 TGGAGAGTCGGATTTCTGCAGTTGATGGT-TTGGTGAAGACTACGACGAAG-ATGATGCA 678
| || || || ||| | | |||||||||| || || ||| | |||||| || | ||||||
Sbjct 485 TAGAAAGCCGAATTGCGGAAGTTGATGGTCTT-GTTAAGGCCACGACG-AGTACGATGCA 542
Query 679 GGTTCAAGTTGAGTTTCTTGATAAGAAGATGGATAGTGAATCAAGAGCATTGAGGC-AGA 737
|||||||||||| || ||||||||||||||||| || ||| ||| | | |||||| |||
Sbjct 543 GGTTCAAGTTGAATTACTTGATAAGAAGATGGAGAGGGAAGCAAAAACGCTGAGGCAAGA 602
Query 738 CGATAGATTCCACATCTTCTGTGTTACATAGTGAGTTGAAGAAGGTAGAGTCTAAG-ACA 796
|| || | | ||||||| || || ||||||||||||||| |||| ||| || ||
Sbjct 603 -AATCGAGAGGAAAGCTTCTGTATTTCAGAGTGAGTTGAAGAAGATAGAATCT-AGAACT 660
Query 797 GAGAGGTTACAGGTTTCTGTAGATG-AGTTAAATGCTAAACCTTTGGTGTCTAGAGAGGA 855
||| || || |||||||||| || ||||||||||| ||| |||| | | ||| ||
Sbjct 661 GAGTCACTAGAGAAGTCTGTAGATGAAG-TAAATGCTAAATCTTGGGTGACGAAAGATGA 719
Query 856 GTTAGAGA-GAGTTTACGAGGAGTTGAAGAAGGGTAAGGTCGGTGATTCTG-----A-T- 907
|||||||| || |||| ||||| ||||||||||||| |||| |||||||| | |
Sbjct 720 GTTAGAGAGGA-TTTATGAGGAACTGAAGAAGGGTAATGTCGATGATTCTGCTTTTAGTG 778
Query 908 -G-TTAACATTGATAAACTGAGGGCTTATGCTCGTGACATAGTGGAGAAAGAGATAGGGA 965
| ||| ||||||| || |||||||||||||||||||||| |||||||||||||| | ||
Sbjct 779 AGATTAGCATTGATGAATTGAGGGCTTATGCTCGTGACATTGTGGAGAAAGAGATTGAGA 838
Query 966 AACATGTTGCAGATGGCCTTGGTCGAGTAGATTATGCGTTAGCGTCTGGTGGAGCTTTTG 1025
|||||| ||||||||||||||| ||||| |||||||| || || |||||||| |||||||
Sbjct 839 AACATGCTGCAGATGGCCTTGGCCGAGTTGATTATGCATTGGCTTCTGGTGGTGCTTTTG 898
Query 1026 TAATGGGGCATTCGGATCCGTT-TCTTGTTGGAAATGGGCGTAATTGGTTTGGGACAAGC 1084
| ||| |||||| ||||| || |||||||||||| ||| ||| ||||||| ||| | |
Sbjct 899 TGATGCAGCATTCAGATCC-TTATCTTGTTGGAAAAGGGAGTAGCTGGTTTGCGACTACC 957
Query 1085 AGGAGACGGGTTCATAGCAAAGCGGTTAAGATGTTAACTCCGAGTTTCGGGGAGCCTGGA 1144
| | |||| | ||||| ||| ||||||||||||||| |||||||||| ||||||||||||
Sbjct 958 ATGCGACGCGCTCATACCAATGCGGTTAAGATGTTATCTCCGAGTTTTGGGGAGCCTGGA 1017
Query 1145 CAGTGTTTTCCTCTGAAAGGAAGCAATGGATATGTTCTAGTCAGGCTAAGAGCACCAATA 1204
|||||||||||||||||||| || |||| ||||| | | ||||||| |||| ||||||
Sbjct 1018 CAGTGTTTTCCTCTGAAAGGTAGTGATGGCTATGTGCAAATCAGGCTGAGAGGACCAATC 1077
Query 1205 ATTCCAGAAGCTGTT-ACTTTGGAACATGTCTCTAAG-GCTGTAGCATATGACAGATCGA 1262
|| ||||| ||| || || ||||| ||||| ||||| | |||||| || ||||||||||
Sbjct 1078 ATACCAGAGGCT-TTCACATTGGAGCATGTAGCTAAGAG-TGTAGCTTACGACAGATCGA 1135
Query 1263 GCGCCCCAAAGGATTGCCGTGTATCAGGATGGCT--AGGTGACAT--A---G-A-T--A- 1310
| || ||||| ||||||||||||||||||||||| | | |||| | | | | |
Sbjct 1136 GTGCTCCAAAAGATTGCCGTGTATCAGGATGGCTGCAAG-GACAAGGAAAAGGACTGGAA 1194
Query 1311 T-----G-G-AGACTGAGA-CAATGCCCCTTCTTACAGAATTCAGTTACGACTTAGACAG 1362
| | | ||| ||||| || ||| ||||| ||||| |||| ||||||| |||||||
Sbjct 1195 TCCTCAGCGGAGAATGAGAACA-TGCAACTTCTAACAGAGTTCACTTACGACCTAGACAG 1253
Query 1363 GTCCAATGCACAGACATTCGACAT-TGCAGACTC-TGCTCACTCAGGACTTGTCAACACT 1420
||| || ||||| |||||| |||| | |||| | | | |||| || | || | |||
Sbjct 1254 GTCGAACGCACAAACATTCAACATCTT-AGACACAT-CAAACTCTGGTCCAATCGATACT 1311
Query 1421 GTCAGGCTAGACTTCAATTCCAACCATGGAAGCT-CTTCACACACTTGCATCTACCGCTT 1479
||||||||||| |||| ||||||||||||||| || | ||||||||||||||||| ||
Sbjct 1312 GTCAGGCTAGATTTCACCTCCAACCATGGAAGCGACT-CGCACACTTGCATCTACCGGTT 1370
Query 1480 CAGGGTTCATGGCCGTGAA-CTAGACTCAGTCTCTGTTG 1517
||||||||| || |||| | | |||| | ||| ||||||
Sbjct 1371 CAGGGTTCACGGGCGTGCATC-AGACCCGGTCCCTGTTG 1408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65896123850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5