BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G10750.1

Length=900
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg903960 jgi|Araly1|903960|Al_scaffold_0003_1088                    185    4e-46


> Ahg903960 jgi|Araly1|903960|Al_scaffold_0003_1088
Length=630

 Score =  185 bits (100),  Expect = 4e-46
 Identities = 141/161 (88%), Gaps = 1/161 (1%)
 Strand=Plus/Plus

Query  721  CCACTTTCTTGGAACCAACCAAGTTCTGTACCGCGATGCGTGTTGTCTCACCTTGAGATC  780
            ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||| | |
Sbjct  373  CCACTTTCTTGGAACCAACCAAGTTCTGTACCGGGATGCTTGTTGTCTCGCCTTGACAAC  432

Query  781  TTGGAGTGGAAACTCTTTGAAGGAAGGAGAGAAGAGAAACAACTTCTGGCTTACATCCTC  840
            || ||||||| |  ||||| ||||   ||||||||||||||| || | ||||||||||||
Sbjct  433  TTTGAGTGGATAGACTTTGGAGGATCAAGAGAAGAGAAACAATTTGTCGCTTACATCCTC  492

Query  841  GAAAACTCTGAAGTCTTTGAAGACGGTGGAAATCTCACTGA  881
            ||||||||| |||| |||||||||||||| ||||||| |||
Sbjct  493  GAAAACTCT-AAGTGTTTGAAGACGGTGGGAATCTCATTGA  532


 Score =  135 bits (73),  Expect = 4e-31
 Identities = 144/177 (81%), Gaps = 9/177 (5%)
 Strand=Plus/Plus

Query  512  ATGGTTCTGGTAGGTCATTGGTTATAGATTCCCCGGGATTAAATTACCTTAGCATCATTG  571
            |||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct  8    ATGGTTATGGTAGGTCATTGGTTATAGATTCCCCGGGATTAAAATACCTTAGAATCATTG  67

Query  572  ACT-C--TTTAGGAGGCAATTTCTCCATCCAGAATATGCCATGCCTTGAAAAGGCCATCG  628
            ||  |  |||||||  |||| |||| |||||||||||||||||||||  |  |||| | |
Sbjct  68   ACCACCCTTTAGGAAACAATATCTCGATCCAGAATATGCCATGCCTTTTATCGGCCGTGG  127

Query  629  TTTCCCTCTGTGGTTTTTACCCGAATGACAAGTTTCTGACATCTTTCTCCTCTGTCA  685
            ||| ||   ||  |    ||  ||| ||||||||||||||||| || || |||||||
Sbjct  128  TTTTCC---GTACTC---ACGTGAAAGACAAGTTTCTGACATCCTTGTCATCTGTCA  178



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33357552375


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5