BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10760.1
Length=1570
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928781 jgi|Araly1|928781|scaffold_301238.1 1580 0.0
> Ahg928781 jgi|Araly1|928781|scaffold_301238.1
Length=1048
Score = 1580 bits (855), Expect = 0.0
Identities = 1001/1066 (94%), Gaps = 31/1066 (3%)
Strand=Plus/Plus
Query 209 CCTCCTCTGTTTTTTCAAAGATAAAAATGAGAGAAGACGATTCAGACTGGTTCGCAAGAT 268
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 CCTCCTCTGTTTTTTTGAAGAT---AATGAGAGAAGACGATTCAGACTGGTTCGCAAGAT 57
Query 269 GGGAAGAAGAACTTCCATCACCAGAAGAGCTCATGCCAATATCACAATCTCTAATCTCAC 328
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 58 GGGAAGAAGAACTTCCATCACCAGAAGAGCTCATGCCAATTTCTCAATCTCTAATCTCAC 117
Query 329 CCGATCTAGCTCTAGCCTTCGATATACGAACCCCAAATCACGGAAACGGAAACTCAAACC 388
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 118 CCGATCTAGCTCTAGCCTTCGATATACGAAGCCCAAATCACGGAAACGGAAACTCAAACC 177
Query 389 AACCtcatcatcatcatcatcaCCAAACCACACCTCCTACACCGTCTCAGCTTCAGCTTC 448
| | | | |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 178 -A----A-C--C-TCATCATCACCAAACCACACCTCCTACACCATCTCAGCTTCAGCTTC 228
Query 449 CATCTTCTCAAGCCAATTCCTCAGCCGAATTCGCTGCAGATTCAGCAGATCTAGGCTCCG 508
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 229 CATCTTCACAAGCCAATTCCTCAGCCGAATTCGCTGCAGATTCAGCAGATCTAGGCT-C- 286
Query 509 GAGGAGCTGCCGGAGACGAACCAGCTCGGACTTTAAAACGACCTCGTCTTGTCTGGACAC 568
|||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||
Sbjct 287 -AGGAGCTGCCGGAGACGAACCAGCACGAACCTTAAAACGACCGCGTCTTGTCTGGACAC 345
Query 569 CGCAGCTGCATAAACGTTTCGTTGATGCTGTTGCGCATTTAGGGATTAAGAACGCAGTTC 628
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 346 CGCAGCTTCATAAACGTTTCGTTGATGCTGTTGCGCATTTAGGGATTAAGAACGCGGTTC 405
Query 629 CTAAAACGATTATGCAGCTTATGAGTGTTGATGGTTTAACTAGAGAAAACGTTGCGAGTC 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 CTAAAACGATTATGCAGCTTATGAGTGTTGATGGTTTAACTAGAGAAAACGTTGCGAGTC 465
Query 689 ATTTGCAAAAGTATAGACTTTATCTTAAGAGAATGCAAGGTTTGTCTTCTGGTGGTGGTG 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 ATTTGCAAAAGTATAGACTTTATCTTAAGAGAATGCAAGGTTTGTCTTCTGGTGGTGGTG 525
Query 749 CTGGTTCAGATCCAGCTACTGATCGTCTTTTCGCTAGCTCTCCTGTTCCTGCTCACTTTC 808
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 526 CTGGTTCAGATCCGGCTACTGATCGTCTTTTCGCTAGCTCTCCGGTTCCTGCTCATTTTC 585
Query 809 TTCATCCTAATCGTGTTCCCAGTTCTGATCATTTCATGCCGTCTTTTGTTCCTATTGCTA 868
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 586 TTCATCCTAATCGTGTTCCCAGTTCTGATCATTTCATGCCGTCTTTTGTTCCCATTGCTA 645
Query 869 CTCTTCAACAACAACAACAAATGGCTGCTGCTGCGGCCG---CTGCTGCAGCAGCTAATC 925
||||||||||||||||||||||||||||||| || |||| |||| |||||||||||||
Sbjct 646 CTCTTCAACAACAACAACAAATGGCTGCTGCGGCTGCCGTGGCTGCAGCAGCAGCTAATC 705
Query 926 CTCATTTACAACCGCCTCAGTTCCACCGTCAAATCGCAGCTGCGCATTTTGGTTCACCGA 985
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 706 CTCATTTACAACCGCCTCAGTTCCACCGACAAATCGCAGCTGCGCATTTTGGTTCACCGA 765
Query 986 CTAATGGTGGATTCAGTTCACCGACGAGTAATGGACAGTTTGGATCACCGACTAGTAATG 1045
| || |||||||||||||||||||||| | ||| || ||||||||||||||||||||||
Sbjct 766 CAAACGGTGGATTCAGTTCACCGACGA--A-TGGTCAATTTGGATCACCGACTAGTAATG 822
Query 1046 GATTTGGATCACCGACGACTAATGGGAAGTTTGATCCTTCGTTCTTGGCGGTGAGGCAAA 1105
| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 823 GGTTTGGATCACCGACGGCGAATGGGAAGTTTGATCCTTCGTTCTTGGCGGTGAGGCAAA 882
Query 1106 CGC---AGCAGCA--A-C--C-AATTCAGAGAATGTCTACACCATCATTGCATAGTCCAG 1156
||| ||||||| | | | |||||| |||||||||||||||||||||||||||||||
Sbjct 883 CGCCGCAGCAGCAGCAGCAACCAATTCACAGAATGTCTACACCATCATTGCATAGTCCAG 942
Query 1157 TTAGTAATTACGTTGAGGATTTGGAATCTGCAAACGCTAATGGAGGGAGAACTGTCTTAA 1216
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 TTGGTAATTACGTTGAGGATTTGGAATCTGCAAACGCTAATGGAGGGAGAACTGTCTTAA 1002
Query 1217 CTTTATTCCCAACTCGAGACGATTAAAAAGTCATTATCTTTCCGGT 1262
|||||||||||||||||||||||| ||| |||| ||||||| |||
Sbjct 1003 CTTTATTCCCAACTCGAGACGATTGAAA-GTCAAAATCTTTCTGGT 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58811338280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5