BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10770.1
Length=1444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928783 jgi|Araly1|928783|scaffold_301240.1 1716 0.0
Ahg487300 jgi|Araly1|487300|fgenesh2_kg.6__434__AT5G05100.1 453 2e-126
Ahg917433 jgi|Araly1|917433|Al_scaffold_0008_2184 313 3e-84
Ahg891121 jgi|Araly1|891121|Al_scaffold_0007_3107 313 3e-84
Ahg912587 jgi|Araly1|912587|Al_scaffold_0001_2841 302 6e-81
Ahg887970 jgi|Araly1|887970|Al_scaffold_0469_1 296 3e-79
> Ahg928783 jgi|Araly1|928783|scaffold_301240.1
Length=1043
Score = 1716 bits (929), Expect = 0.0
Identities = 1007/1045 (96%), Gaps = 3/1045 (0%)
Strand=Plus/Plus
Query 224 TACGAGGC-TTTTCTTCATCTTTATGGCTTCTATGACCGAGAAGGAAGCTATGGTGGATC 282
||||| || ||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1 TACGAAGCTTTTTCTTCATC--TATGGCTGCTATGACCGAGAAGGAAGCTATGGTGGATC 58
Query 283 CTTTTCTGGTCGAGGCTCTTCAAAATCCTCGTCATCGTCTCACCATTTTGCGAATGGAGC 342
||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 59 CTTTTCTGGTCGAAGCTCTTCAGAATCCTCGTCATCGTCTCACCATTTTGCGGATGGAGC 118
Query 343 TTGATATACAGAAGTTCTTTCAAAACCCTGAGCAGCTTCAGTTCGAATTCCCGCCTTTTC 402
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 119 TTGATATACAGAAGTTCTTTCAAAACCCTGAGCAGCTTCAGTTCGAATTCCGGCCTTTTC 178
Query 403 CAACATCGTACCTGCGTCTTGCTGCACATCGAGTTGCTCAGCATTATGGACTAGTAACCA 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CAACATCGTACCTGCGTCTTGCTGCACATCGAGTTGCTCAGCATTATGGACTAGTAACCA 238
Query 463 TGGCTTTGGACAATGGTACTGGTGCAGGAGATGGATCCGATAACAGAATCCTCGTGACGA 522
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |
Sbjct 239 TGGCTTTGGACAATGGTACTGGTGCAGGTGATGGATCCGAGAACAGAATCCTGGTGACTA 298
Query 523 AGACAGCGGAAAGTAGATTTCCTTATGTCTGCTTATCCGAAATCCCTGTGAAACAACCTG 582
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AGACAGCGGAGAGTAGATTTCCTTATGTCTGCTTATCCGAAATCCCTGTGAAACAACCTG 358
Query 583 AGAATGGTAGACCCGAGGGTTTCAAAATCGCTATCAAGCCTAGACCCAAGAGAGGATCTG 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AGAATGGTAGACCCGAGGGTTTCAAAATCGCTATCAAGCCTAGACCCAAGAGAGGATCTG 418
Query 643 GTTGTGGGGGTAGCGGATCAGGAGTACAGCAGAATCTTTTGAGAAGTGTTGAGGAGAGAA 702
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 419 GTTGTGGGGGTAGCGGATCGGGAGTACAACAGAATCTTTTGAGAAGTGTTGAGGAGAGAA 478
Query 703 AGGAAGAGTATGATAAAGCTCGCGCTCGGATCTTTAATAGTCCTAGCAGTTCCGACTCTG 762
||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||
Sbjct 479 AGGAAGAGTATGATAAAGCCCGGGCTCGGATCTTTAACAGCCCTAGCAGTTCCGACTCTG 538
Query 763 AAGATTCTTCATCACTACGACCTCCCTCTCTTGAAGTGAGAAACACATGTATAAACCGGA 822
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 539 AAGATTCTTCATCACTACGACCTCCCCCTCTTGAAGTGAAAAACACATGTATAAACCGGA 598
Query 823 ATGAGACTGAAGTGGCGGTTAATAATAGTCCTGTCGATGCTGTTACTCGAGACTCTGGAC 882
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 599 ATGAGACTGAAGTGGCGGTTAATAATAATCCTGTTGATGCTGTTACTCGAGACTCTGGAC 658
Query 883 GGACTTCTCGAGTAGCCATTATCAGAGATAGAGAGAAAGATCGATATGACCCGGATTATG 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GGACTTCTCGAGTAGCCATTATCAGAGATAGAGAGAAAGATCGATATGACCCGGATTATG 718
Query 943 ACAGGAGCTATGACAGGTATGTCGTGGATCCGGCCTACAGGTACGTTAGGGTTATGCCGT 1002
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 719 ACAGGAGCTATGACAGGTATGTCGTAGATCCCGCCTACAGGTACGTCAGGGTTATGCCGT 778
Query 1003 CTGGCCAAAGCTTCAGTCCAATGCCAATCCATATTCCGTTTCACGATGGGTTTTTCCCGC 1062
|||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||
Sbjct 779 CTGGCCAAAGCTTCAGTCCAATACCAATCCACATTCCGTTTCACGATGGGGTTTTCCCGC 838
Query 1063 ATATGCCAAGAGGTCATCAAGCCAACCTAAACTATGGGCATCCGCTTAACCCTGCTTTGA 1122
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGATGCCAAGAGGTCATCAAGCCAACCTAAACTATGGGCATCCGCTTAACCCTGCTTTGA 898
Query 1123 GTCCCTTTACTCATAACGTGGCTTCATATACACCGTGGCCAAACTCACCCGTTATGAACT 1182
|||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||
Sbjct 899 GTCCCTTTACTCATAACGCGGCTTCATATACACCGTGGCCAAACTCACCTGCTATGAACT 958
Query 1183 ATGCACAGCCGTTGAACGGCTCAGACACAAATCTTTACAGGTATCCTTCTGCAAGTAATC 1242
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 959 ATGCACAGCCGTTGAACGGCTCAGACACAAATCTTTTCAGGCATCCTTCTGCAAGTAATC 1018
Query 1243 CCTGACAGCAAGAGTAGTGTTTGAG 1267
|||||| |||||| |||||||||||
Sbjct 1019 CCTGACCGCAAGACTAGTGTTTGAG 1043
> Ahg487300 jgi|Araly1|487300|fgenesh2_kg.6__434__AT5G05100.1
Length=1479
Score = 453 bits (245), Expect = 2e-126
Identities = 445/540 (82%), Gaps = 19/540 (4%)
Strand=Plus/Plus
Query 246 ATGGCTTCTATGACCGAGAAGGAAGCTATGGTGGATCCTTTTCTGGTCGAGGCTCTTCAA 305
||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 226 ATGGCCGCTATGAGCGAGAAGGAAGCTATGGTGGATCCTTTTTTGGTCGAGGCTCTTCAG 285
Query 306 AATCCTCGTCATCGTCTCACCATTTTGCGAATGGAGCTTGATATACAGAAGTTCTTTCAA 365
|| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 286 AACCCTCGTCATCGTCTCACCATTTTGCGTATGGAGCTCGATATACAGAAGTTCTTTCAA 345
Query 366 AACCCTGAGCAGCTTCAGT-TCGAATTCCCGCCTTTTCCAACATCGTACCTGCGTCTTGC 424
| || ||||||| || | | || |||| |||||| || ||||| || || ||||||
Sbjct 346 AGTCCAGAGCAGCAACAATAT-GAGTTCCAGCCTTTGCCTACATCTTATCTTCGTCTTAT 404
Query 425 TGCACATCGAGTTGCTCAGCATTATGGACTAGTA-ACCATGGCTTTGGACAATGGTACTG 483
||| || || |||||||||||||| || || || || | |||||| ||| |||| |
Sbjct 405 TGCTCACCGTGTTGCTCAGCATTACGGGCT-GTTTACAACGGCTTTAGACGGTGGT---G 460
Query 484 GTGCAGGAGATGGATCCGATAACAGAATCCTCGTGACGAAGACAGCGGAAAGTAGATTTC 543
||| | | ||| || | ||||||||| | | ||| || || ||||||||||||| |
Sbjct 461 GTGTTG-A--TGGCTCAGGGAACAGAATCTTGGCGACCAAAACTGCGGAAAGTAGATACC 517
Query 544 CTTATGTCTGCTTATCCGAAATCCCTGTGAAACAACCTGAGA---ATGGTAGACCCGAGG 600
| |||||||| || || || || ||||| || |||||||||| ||||||| || ||||
Sbjct 518 CGTATGTCTGTTTGTCTGAGATTCCTGTTAAGCAACCTGAGATTCATGGTAGGCCTGAGG 577
Query 601 GTTTCAAAATCGCTATCAAGCCTAGACCCAAGAGAGGATCTGGTTGTGGG--GGTAGCGG 658
||||||||||||| |||||||||||||| || |||||||||||| | || ||||| ||
Sbjct 578 GTTTCAAAATCGCCATCAAGCCTAGACCTAACAGAGGATCTGGT-G-GGATTGGTAGTGG 635
Query 659 ATCAGGAGTACAGCAGAATCTTTTGAGAAGTGTTGAGGAGAG-AAAGGAAGAGTATGATA 717
||||||||| | |||||||||||||||| ||||||||||| |||| ||||||||||||
Sbjct 636 ATCAGGAGTTGAAAAGAATCTTTTGAGAAGCGTTGAGGAGAGGAAAG-AAGAGTATGATA 694
Query 718 AAGCTCGCGCTCGGATCTTTAATAGTCCTAGCAGTTCCGACTCTGAAGATTCTTCATCAC 777
|||||| ||||| ||||| || || ||||||||||| |||||||||||||||||| |||
Sbjct 695 GAGCTCGGGCTCGTATCTTCAACAGCCCTAGCAGTTCAGACTCTGAAGATTCTTCAACAC 754
> Ahg917433 jgi|Araly1|917433|Al_scaffold_0008_2184
Length=210
Score = 313 bits (169), Expect = 3e-84
Identities = 193/205 (94%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 246 ATGGCTTCTATGACCGAGAAGGAAGCTATGGTGGATCCTTTTCTGGTCGAGGCTCTTCAA 305
|||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1 ATGGCTGCTATGACCGAGAAGGAAGCTATGGTAGATCCTTTTTTGGTCGAGGCTCTTCAG 60
Query 306 AATCCTCGTCATCGTCTCACCATTTTGCGAATGGAGCTTGATATACAGAAGTTCTTTCAA 365
|||||||| |||||||||||||||||| | |||||| |||||||||||||||||||||||
Sbjct 61 AATCCTCGCCATCGTCTCACCATTTTGTGGATGGAGATTGATATACAGAAGTTCTTTCAA 120
Query 366 AACCCTGAGCAGCTTCAGTTCGAATTCCCGCCTTTTCCAACATCGTACCTGCGTCTTGCT 425
|||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||||
Sbjct 121 AACCCTGAGCAGCTTCAGTTAGAATTCCTGCCTTTTCCAACATCGTACATGCGTTTTGCT 180
Query 426 GCACATCGAGTTGCTCAGCATTATG 450
|||||||||||||||||||||||||
Sbjct 181 GCACATCGAGTTGCTCAGCATTATG 205
> Ahg891121 jgi|Araly1|891121|Al_scaffold_0007_3107
Length=210
Score = 313 bits (169), Expect = 3e-84
Identities = 194/206 (94%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 246 ATGGCTTCTATGACCGAGAAGGAAGCTATGGTGGATCCTTTTCTGGTCGAGGCTCTTCAA 305
|||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1 ATGGCTGCTATGACCGAGAAGGAAGCTATGGTAGATCCTTTTTTGGTCGAGGCTCTTCAG 60
Query 306 AATCCTCGTCATCGTCTCACCATTTTG-CGAATGGAGCTTGATATACAGAAGTTCTTTCA 364
|||||||| |||||||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct 61 AATCCTCGCCATCGTCTCACCATTTTGTCG-ATGGAGATTGATATACAGAAGTTCTTTCA 119
Query 365 AAACCCTGAGCAGCTTCAGTTCGAATTCCCGCCTTTTCCAACATCGTACCTGCGTCTTGC 424
||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| ||||
Sbjct 120 AAACCCTGAGCAGCTTCAGTTAGAATTCCTGCCTTTTCCAACATCGTACATGCGTTTTGC 179
Query 425 TGCACATCGAGTTGCTCAGCATTATG 450
||||||||||||||||||||||||||
Sbjct 180 TGCACATCGAGTTGCTCAGCATTATG 205
> Ahg912587 jgi|Araly1|912587|Al_scaffold_0001_2841
Length=210
Score = 302 bits (163), Expect = 6e-81
Identities = 191/205 (93%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 246 ATGGCTTCTATGACCGAGAAGGAAGCTATGGTGGATCCTTTTCTGGTCGAGGCTCTTCAA 305
|||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1 ATGGCTGCTATGACCGAGAAGGAAGCTATGGTAGATCCTTTTTTGGTCGAGGCTCTTCAG 60
Query 306 AATCCTCGTCATCGTCTCACCATTTTGCGAATGGAGCTTGATATACAGAAGTTCTTTCAA 365
|||||||| |||||||||||||||||| | |||||| |||||||||||||||||||||||
Sbjct 61 AATCCTCGCCATCGTCTCACCATTTTGTGGATGGAGATTGATATACAGAAGTTCTTTCAA 120
Query 366 AACCCTGAGCAGCTTCAGTTCGAATTCCCGCCTTTTCCAACATCGTACCTGCGTCTTGCT 425
||||||||||| |||||||| ||||||| ||||||||||||||||||| ||||| ||| |
Sbjct 121 AACCCTGAGCAACTTCAGTTAGAATTCCTGCCTTTTCCAACATCGTACATGCGTTTTGTT 180
Query 426 GCACATCGAGTTGCTCAGCATTATG 450
|||||||||||||||||||||||||
Sbjct 181 GCACATCGAGTTGCTCAGCATTATG 205
> Ahg887970 jgi|Araly1|887970|Al_scaffold_0469_1
Length=210
Score = 296 bits (160), Expect = 3e-79
Identities = 189/203 (93%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 246 ATGGCTTCTATGACCGAGAAGGAAGCTATGGTGGATCCT-TTTCTGGTCGAGGCTCTTCA 304
|||||| |||||||||||||||||||||||| ||||||| ||| |||||||||| |||||
Sbjct 1 ATGGCTGCTATGACCGAGAAGGAAGCTATGGCGGATCCTGTTT-TGGTCGAGGCACTTCA 59
Query 305 AAATCCTCGTCATCGTCTCACCATTTTGCGAATGGAGCTTGATATACAGAAGTTCTTTCA 364
||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||
Sbjct 60 GAATCCTCGTCATCGTCTCACCATTTCGCGGATGGAGCTTGATAGACAGAAGTTCTTTCA 119
Query 365 AAACCCTGAGCAGCTTCAGTTCGAATTCCCGCCTTTTCCAACATCGTACCTGCGTCTTGC 424
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 120 AAACCTTGAGCAGCTTCAGTTCGAATTCCCGCCTTTTCCAACATCGTACATGCGTGTTCC 179
Query 425 TGCACATCGAGTTGCTCAGCATT 447
|||||||| ||||||||||||||
Sbjct 180 TGCACATCAAGTTGCTCAGCATT 202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54011967410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5