BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10780.1
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903963 jgi|Araly1|903963|Al_scaffold_0003_1091 678 0.0
> Ahg903963 jgi|Araly1|903963|Al_scaffold_0003_1091
Length=684
Score = 678 bits (367), Expect = 0.0
Identities = 413/435 (95%), Gaps = 4/435 (1%)
Strand=Plus/Plus
Query 55 ATGGCGATCTCACCGGTACTATTCATTGGTTTGATTTACCTCGCCGGCGGTGGCTCTCTT 114
|||||||||||||| |||||||||||||||||||| | |||||| |||||||||||| ||
Sbjct 1 ATGGCGATCTCACCCGTACTATTCATTGGTTTGATGTGCCTCGCAGGCGGTGGCTCTATT 60
Query 115 TTTCCGGGGGTGGAGGCAATATGGTTAACGGTTCCAGA-ATCAGGAGAGAGATGCGTCTA 173
||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 61 TTTCCGGCGGTGGAGGCAATATGGTTAACGGTTCCA-ACTTCAGGAGAGAGATGCGTCTA 119
Query 174 CGAAGAGATCCAAGCCAACGTGGTCGTTGTCCTTGATTACATTTGCATCGACGATG-CTT 232
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 120 CGAAGACATCCAAGCCAACGTGGTCGTTGTCCTCGATTACATTTGCATCGACGA-GTCTT 178
Query 233 TCACTCAACTTGGTCCAACATTAGATGTTCGGGTAACATCTCCATATGGGAAGGAACTGT 292
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 179 TCACTCAACTTGGTCCAACATTAGATGTTCGGGTAACATCTCCGTATGGTAAGGAACTAT 238
Query 293 ACAAGATAGCAAACGTGACACACGGTCAGGCTGCGTTTACAACGAGCGAGAGTGGAACAT 352
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 239 ACAAGATAGCAAACGTGACTCACGGTCAGGCTGCCTTTACAACGAGCGAGAGTGGAACAT 298
Query 353 TCTTAGCTTGTTTAGCAATGCATCACGACCAGTCACATCACTCAGTCAATAGCTCTGTTA 412
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 299 TCTTAGCTTGTTTAGCAATGCATCACGACCAGACACATCACTCAGTCAATAACTCTGTTA 358
Query 413 TCGTCAGTCTTGATTGGAAGATGGGTATCAGAGCCAAAGACTGGGATTCTGTTGCTAAAA 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 359 TCGTCAGTCTTGATTGGAAGATGGGTATCAGAGCCAAAGACTGGGATTCTGTTGCCAAGA 418
Query 473 AAGAAAAGATCGAGG 487
|||||||||||||||
Sbjct 419 AAGAAAAGATCGAGG 433
Score = 305 bits (165), Expect = 2e-82
Identities = 206/225 (92%), Gaps = 6/225 (3%)
Strand=Plus/Plus
Query 487 GGTGTGGAGCTTGAGATTCGAAGATCTACAGAATACGCAAGTGCTATTAGGGCCAACATA 546
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 463 GGTGTGGAGCTTGAGATTCGAAAATCTACAGAATACGCAAGTGCTATTAGGGCCAACATA 522
Query 547 CTCTATTTGAGAATCAGGGAAGCATATATGAGGGAAATAAACGAGAAGACAAAC-ACGAG 605
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 523 CTCTATTTGAGAATCAGGGAAGCATATATGAGGGAAATAAACGAGAAGACAAACCA-GAG 581
Query 606 GGTCAA-TCAGCTCGGCTTAATGTCTTTAGGAGTAGCTATTGTCGTTTCGA-TTAGTCAA 663
||| | |||||||||||| |||||||| ||| ||||| ||| |||||| | ||| ||||
Sbjct 582 GGT-AGCTCAGCTCGGCTTTATGTCTTTCGGACTAGCTTTTGGCGTTTC-ACTTATTCAA 639
Query 664 GTTTTGTATCTCAAACGATACTTCCTCAAAAAGAAGCTTATTTAA 708
|||| | |||||||||| | ||||||||||||||||||| |||||
Sbjct 640 GTTTGGCATCTCAAACGCTTCTTCCTCAAAAAGAAGCTTCTTTAA 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26037952311
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5