BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G10790.1 Length=960 Score E Sequences producing significant alignments: (Bits) Value Ahg341215 jgi|Araly1|341215|fgenesh1_pg.C_scaffold_3000978 898 0.0 Ahg928019 jgi|Araly1|928019|scaffold_300476.1 139 3e-32 > Ahg341215 jgi|Araly1|341215|fgenesh1_pg.C_scaffold_3000978 Length=1158 Score = 898 bits (486), Expect = 0.0 Identities = 815/964 (85%), Gaps = 62/964 (6%) Strand=Plus/Plus Query 13 AAGG-GGAAAAGAACCATCAGTAACACTTGGAAACTTGTTACAAGGTCCCAAACTGACCC 71 |||| | ||||| || ||| ||||||||| |||| ||||||||||||||||||| |||| Sbjct 13 AAGGTGAAAAAG-ACAATCGGTAACACTTCAAAACGTGTTACAAGGTCCCAAACTTACCC 71 Query 72 CTTTGAAGG---AATGCCTCTGCATCTGAAAGAGAAGATTCTCATGAAATTGAAGGCCAA 128 ||| ||||| |||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 72 CTTCGAAGGAATAATGCCTCTGAATCTGAAAGAGGAGATTCTCATGAAATTGAAGGCCAA 131 Query 129 AATCATATCGACGTTCATCCTCCTTTCCAAGTCCTGGTCATCGATAGTCCTTAACAAAGA 188 || |||||||| | | ||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 132 AACCATATCGAAGCTGATCCTCCTTTCGAAGTCATGGTCATCGATAGTCCTTAACAAAGA 191 Query 189 TTTCACCAACATGTATTTGATAATAAAGTTCTTTGAATCTTTGAATCGACCACGTCTTCT 248 ||||||||||| || | | | | | | |||||||| ||||||||||||||| Sbjct 192 TTTCACCAACA--TA--T-A-CCT---G-AC--TCAATCTTTGGCTCGACCACGTCTTCT 239 Query 249 TTTGGCAGTCGACGATCGAGAAATAAATATGCAGTTCTTCCACTCTTGCTCTCGAGAGGA 308 ||| || || || ||| || ||| || |||| ||||||||||||||||||| |||||| Sbjct 240 TTTCTCAATCTACAATCTTGACATAGATGTGCATTTCTTCCACTCTTGCTCTCAAGAGGA 299 Query 309 TCCATCTTCTGATCATCAAACGGTT-GGCTGTTACCCTGATTCGTA-TCCGCGTATCTGG 366 |||||||||||||||||||| |||| || ||||||||||||||| | || || || |||| Sbjct 300 TCCATCTTCTGATCATCAAAGGGTTAGG-TGTTACCCTGATTCGAATTCGGC-TAGCTGG 357 Query 367 TATGACTTTTCTCCACCTGTTCGTGGCTTGATCTGCTGTCTA-AACAA--T-TCTACTAA 422 ||||||| |||||||||||| ||||||||||||||||||||| || || | | |||||| Sbjct 358 TATGACTATTCTCCACCTGTCCGTGGCTTGATCTGCTGTCTAGAA-AATCTATATACTAA 416 Query 423 AGTGGTAATTGGAAATCCTACTACTTGTCAATTTGAAACTTTACCGAGAGTCAGAAC--- 479 ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 417 AGTGGTAATTGGAAATCCTACTACTTGTCAATTTGTAACTTTACCTAGAGTCAGAACTAA 476 Query 480 ----CAA-A-ATATACCAAGAAATATTTCCCTTCTTT-GGATACGATCATGTTAAGGATG 532 || | |||| || ||| ||||| ||||| ||| ||||| |||| ||||||||||| Sbjct 477 GAAGAAAGACATATTCCCAGACATATTCCCCTT-TTTGGGATATGATCCTGTTAAGGATG 535 Query 533 AATACAAAGTCTTGTGCATGACGATATCGGATGAGTACTAT-AGTAGATCAGGAAATATT 591 |||||||||||||||||||||||||| | || | || | || | ||||||| || Sbjct 536 AATACAAAGTCTTGTGCATGACGATA---G--CAG-CCAATCA-TA-A--AGGAAATGTT 585 Query 592 GTGTCCAAGGAGCATAAAGTTTTCACTCTAGGATGTAAACAGAAGAAATGGAGAATGATC 651 ||||||||||| ||| ||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 586 GTGTCCAAGGAACATCAAGTTTTCACTCTAGGAGGTAAAAAGAAGAAATGGAGAATGATC 645 Query 652 GAATGT-ACGATTAATCATTATCTTACTCCTGGAACTCAAGGAATATTTAGCAATGGGGT 710 || ||| | |||||||||||||||| ||||| ||||| |||| |||| |||||||||||| Sbjct 646 GATTGTGA-GATTAATCATTATCTTCCTCCTAGAACTAAAGGGATATGTAGCAATGGGGT 704 Query 711 TATCTATTACT-TCGCTAGGGTCAATGATGATCAGTCGCTAATGTGCTTTGTTGTGGGGT 769 | | ||||| | | |||| |||||| ||| |||||| ||||||||||||| |||||||| Sbjct 705 TGTGTATTA-TCTAGCTATGGTCAACCATGTTCAGTCTCTAATGTGCTTTGATGTGGGGT 763 Query 770 CTGAAAAGTTTAGTGTCGTTGAGTTACCGAGGCCGGCCGTCGAAGTTCTAGCGAACTACG 829 |||||||||||||||||||| |||||||| || || || ||| |||||||||| |||| Sbjct 764 CTGAAAAGTTTAGTGTCGTTAAGTTACCGGGGAAGGTCG--GAA-TTCTAGCGAAGTACG 820 Query 830 GCGAAAAGATAGCTGTAACGAATTTGTTATATG-CTAGTAATGATAGACTTTTTGTATGG 888 |||||||||||||||||||||||||||||| || || || || | ||||| || ||| Sbjct 821 GCGAAAAGATAGCTGTAACGAATTTGTTATTTGACT-GT-AT-A-CGACTTGACGTTTGG 876 Query 889 ATTCTAGAAGATGCCAGCAAACAAGAATGGTCAAACT-TTTGTGTCTTGGTTCCTTCTTG 947 ||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||| Sbjct 877 ATTCTAGAAGATGCCAGCAAACAAGAATGGTCAAA-TATTTATGTCTTGGTTCCTTCTTG 935 Query 948 GGTA 951 ||| Sbjct 936 TGTA 939 > Ahg928019 jgi|Araly1|928019|scaffold_300476.1 Length=1221 Score = 139 bits (75), Expect = 3e-32 Identities = 431/595 (72%), Gaps = 56/595 (9%) Strand=Plus/Plus Query 373 TTTTCTCCACCTGTTCGTGGCTTGATCTGCTGTCTAAACAATTCTACTAAAGTGGTAATT 432 ||||||||||| || || |||||||||||| ||| || ||| ||||| ||| | ||| Sbjct 409 TTTTCTCCACCCGTCCGCGGCTTGATCTGCCGTC--AA-AATGATACTACCGTGATCATT 465 Query 433 GGAAATCCTA-CTACTTGTCAATT-TGAAACTTTACCGAGAGTCAGAA-CCAAAATATAC 489 |||||||||| | || | || || | ||||||||| ||||||| || | | | | | Sbjct 466 GGAAATCCTAGC-ACGGGCCAGTTCT-TAACTTTACCTAGAGTCA-AATCTAGGAGA-A- 520 Query 490 CAAGAAATATTTC-CCTTCTTTGGATACGATCATGTTAAGGATGAATACAAAGTCTTGTG 548 || || ||| |||| |||||||| |||| ||| || |||||||||||||| ||||| Sbjct 521 -GAGGTTTA-TTCTCCTTTTTTGGATATGATCCTGTGAATGATGAATACAAAGTGTTGTG 578 Query 549 CATGACGATATCGGATGAGTACTAT-AGTAGATCAG-GAA--A-TA-TTGTGTCCAAGGA 602 ||||||| || | | ||| | | | ||| | | ||| | | ||||| || |||| Sbjct 579 CATGACGGTA-C-TACAAGTTC-GTCA-AAGA-C-GTGAATCACGAGTTGTGGCCGAGGA 632 Query 603 GCATAAAGTTTTCACTCTAGGATG-TAAACAGAAGAAATGGAGAATGATCGAATGT-ACG 660 |||| ||||||||||||||||| | ||||| || |||||||||| |||||||||| || Sbjct 633 GCATCAAGTTTTCACTCTAGGA-GCTAAAC--AA-AAATGGAGAAGGATCGAATGTAACC 688 Query 661 ATTAATCAT-TATCTTACTCCTGGAACTCAAGGAATATTTAGCAATGGGGTTATCTATTA 719 | | ||||| | || | || || |||| |||| ||| | || || ||| | ||||| Sbjct 689 A-TGATCATCT-TCCTCCTTCTTTAACTAAAGGGGTATGCATAAACGGTGTTGTTTATTA 746 Query 720 CTT-CGCTAGGGTC--AA-TG-ATGATCAGTCGCTAATGTGCTTTGTTGTGGGGTCTGAA 774 || ||| || || || || | |||| | | ||| |||||| | || |||||| Sbjct 747 -TTATGCTTGGATCAAAAGTGAAGGATC-TTTGATAA---GCTTTGATCTGATATCTGAA 801 Query 775 AAGTTTAGTGTCGTTGAGTTACCGAGGCCGGCCGTCGAAGT-TCTAGCGAACTACGGCGA 833 ||||| |||| || ||||||| | || || || | |||| ||||||| | Sbjct 802 GTGTTTAATGTCATTAAGTTACC--TG-AGGATATCCAA-TGCCTAGTGAACTACAATGG 857 Query 834 AAAGATAGCTGTAACGAATTTGTTATATGCTAGTAATGATAGACTTTTTGTATGGATTCT 893 |||||||||| || ||| ||| || || | | | | || |||| | ||| |||| Sbjct 858 AAAGATAGCTTTAGCGAGTTT-TTGTA----AATTA-GGTACACTTGACCTGTGGGTTCT 911 Query 894 AGAAGATGCCAGCAAACAAGAATGGTCAAACTTTTGTGTCTTGGTTCCTTCTTGG 948 ||||||||||||||||||||||||||||| ||| | ||||||||||||||||| Sbjct 912 GGAAGATGCCAGCAAACAAGAATGGTCAAAAGTTTCTCTCTTGGTTCCTTCTTGG 966 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35644927395 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5