BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10790.1
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341215 jgi|Araly1|341215|fgenesh1_pg.C_scaffold_3000978 898 0.0
Ahg928019 jgi|Araly1|928019|scaffold_300476.1 139 3e-32
> Ahg341215 jgi|Araly1|341215|fgenesh1_pg.C_scaffold_3000978
Length=1158
Score = 898 bits (486), Expect = 0.0
Identities = 815/964 (85%), Gaps = 62/964 (6%)
Strand=Plus/Plus
Query 13 AAGG-GGAAAAGAACCATCAGTAACACTTGGAAACTTGTTACAAGGTCCCAAACTGACCC 71
|||| | ||||| || ||| ||||||||| |||| ||||||||||||||||||| ||||
Sbjct 13 AAGGTGAAAAAG-ACAATCGGTAACACTTCAAAACGTGTTACAAGGTCCCAAACTTACCC 71
Query 72 CTTTGAAGG---AATGCCTCTGCATCTGAAAGAGAAGATTCTCATGAAATTGAAGGCCAA 128
||| ||||| |||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 72 CTTCGAAGGAATAATGCCTCTGAATCTGAAAGAGGAGATTCTCATGAAATTGAAGGCCAA 131
Query 129 AATCATATCGACGTTCATCCTCCTTTCCAAGTCCTGGTCATCGATAGTCCTTAACAAAGA 188
|| |||||||| | | ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 132 AACCATATCGAAGCTGATCCTCCTTTCGAAGTCATGGTCATCGATAGTCCTTAACAAAGA 191
Query 189 TTTCACCAACATGTATTTGATAATAAAGTTCTTTGAATCTTTGAATCGACCACGTCTTCT 248
||||||||||| || | | | | | | |||||||| |||||||||||||||
Sbjct 192 TTTCACCAACA--TA--T-A-CCT---G-AC--TCAATCTTTGGCTCGACCACGTCTTCT 239
Query 249 TTTGGCAGTCGACGATCGAGAAATAAATATGCAGTTCTTCCACTCTTGCTCTCGAGAGGA 308
||| || || || ||| || ||| || |||| ||||||||||||||||||| ||||||
Sbjct 240 TTTCTCAATCTACAATCTTGACATAGATGTGCATTTCTTCCACTCTTGCTCTCAAGAGGA 299
Query 309 TCCATCTTCTGATCATCAAACGGTT-GGCTGTTACCCTGATTCGTA-TCCGCGTATCTGG 366
|||||||||||||||||||| |||| || ||||||||||||||| | || || || ||||
Sbjct 300 TCCATCTTCTGATCATCAAAGGGTTAGG-TGTTACCCTGATTCGAATTCGGC-TAGCTGG 357
Query 367 TATGACTTTTCTCCACCTGTTCGTGGCTTGATCTGCTGTCTA-AACAA--T-TCTACTAA 422
||||||| |||||||||||| ||||||||||||||||||||| || || | | ||||||
Sbjct 358 TATGACTATTCTCCACCTGTCCGTGGCTTGATCTGCTGTCTAGAA-AATCTATATACTAA 416
Query 423 AGTGGTAATTGGAAATCCTACTACTTGTCAATTTGAAACTTTACCGAGAGTCAGAAC--- 479
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 417 AGTGGTAATTGGAAATCCTACTACTTGTCAATTTGTAACTTTACCTAGAGTCAGAACTAA 476
Query 480 ----CAA-A-ATATACCAAGAAATATTTCCCTTCTTT-GGATACGATCATGTTAAGGATG 532
|| | |||| || ||| ||||| ||||| ||| ||||| |||| |||||||||||
Sbjct 477 GAAGAAAGACATATTCCCAGACATATTCCCCTT-TTTGGGATATGATCCTGTTAAGGATG 535
Query 533 AATACAAAGTCTTGTGCATGACGATATCGGATGAGTACTAT-AGTAGATCAGGAAATATT 591
|||||||||||||||||||||||||| | || | || | || | ||||||| ||
Sbjct 536 AATACAAAGTCTTGTGCATGACGATA---G--CAG-CCAATCA-TA-A--AGGAAATGTT 585
Query 592 GTGTCCAAGGAGCATAAAGTTTTCACTCTAGGATGTAAACAGAAGAAATGGAGAATGATC 651
||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 586 GTGTCCAAGGAACATCAAGTTTTCACTCTAGGAGGTAAAAAGAAGAAATGGAGAATGATC 645
Query 652 GAATGT-ACGATTAATCATTATCTTACTCCTGGAACTCAAGGAATATTTAGCAATGGGGT 710
|| ||| | |||||||||||||||| ||||| ||||| |||| |||| ||||||||||||
Sbjct 646 GATTGTGA-GATTAATCATTATCTTCCTCCTAGAACTAAAGGGATATGTAGCAATGGGGT 704
Query 711 TATCTATTACT-TCGCTAGGGTCAATGATGATCAGTCGCTAATGTGCTTTGTTGTGGGGT 769
| | ||||| | | |||| |||||| ||| |||||| ||||||||||||| ||||||||
Sbjct 705 TGTGTATTA-TCTAGCTATGGTCAACCATGTTCAGTCTCTAATGTGCTTTGATGTGGGGT 763
Query 770 CTGAAAAGTTTAGTGTCGTTGAGTTACCGAGGCCGGCCGTCGAAGTTCTAGCGAACTACG 829
|||||||||||||||||||| |||||||| || || || ||| |||||||||| ||||
Sbjct 764 CTGAAAAGTTTAGTGTCGTTAAGTTACCGGGGAAGGTCG--GAA-TTCTAGCGAAGTACG 820
Query 830 GCGAAAAGATAGCTGTAACGAATTTGTTATATG-CTAGTAATGATAGACTTTTTGTATGG 888
|||||||||||||||||||||||||||||| || || || || | ||||| || |||
Sbjct 821 GCGAAAAGATAGCTGTAACGAATTTGTTATTTGACT-GT-AT-A-CGACTTGACGTTTGG 876
Query 889 ATTCTAGAAGATGCCAGCAAACAAGAATGGTCAAACT-TTTGTGTCTTGGTTCCTTCTTG 947
||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||
Sbjct 877 ATTCTAGAAGATGCCAGCAAACAAGAATGGTCAAA-TATTTATGTCTTGGTTCCTTCTTG 935
Query 948 GGTA 951
|||
Sbjct 936 TGTA 939
> Ahg928019 jgi|Araly1|928019|scaffold_300476.1
Length=1221
Score = 139 bits (75), Expect = 3e-32
Identities = 431/595 (72%), Gaps = 56/595 (9%)
Strand=Plus/Plus
Query 373 TTTTCTCCACCTGTTCGTGGCTTGATCTGCTGTCTAAACAATTCTACTAAAGTGGTAATT 432
||||||||||| || || |||||||||||| ||| || ||| ||||| ||| | |||
Sbjct 409 TTTTCTCCACCCGTCCGCGGCTTGATCTGCCGTC--AA-AATGATACTACCGTGATCATT 465
Query 433 GGAAATCCTA-CTACTTGTCAATT-TGAAACTTTACCGAGAGTCAGAA-CCAAAATATAC 489
|||||||||| | || | || || | ||||||||| ||||||| || | | | | |
Sbjct 466 GGAAATCCTAGC-ACGGGCCAGTTCT-TAACTTTACCTAGAGTCA-AATCTAGGAGA-A- 520
Query 490 CAAGAAATATTTC-CCTTCTTTGGATACGATCATGTTAAGGATGAATACAAAGTCTTGTG 548
|| || ||| |||| |||||||| |||| ||| || |||||||||||||| |||||
Sbjct 521 -GAGGTTTA-TTCTCCTTTTTTGGATATGATCCTGTGAATGATGAATACAAAGTGTTGTG 578
Query 549 CATGACGATATCGGATGAGTACTAT-AGTAGATCAG-GAA--A-TA-TTGTGTCCAAGGA 602
||||||| || | | ||| | | | ||| | | ||| | | ||||| || ||||
Sbjct 579 CATGACGGTA-C-TACAAGTTC-GTCA-AAGA-C-GTGAATCACGAGTTGTGGCCGAGGA 632
Query 603 GCATAAAGTTTTCACTCTAGGATG-TAAACAGAAGAAATGGAGAATGATCGAATGT-ACG 660
|||| ||||||||||||||||| | ||||| || |||||||||| |||||||||| ||
Sbjct 633 GCATCAAGTTTTCACTCTAGGA-GCTAAAC--AA-AAATGGAGAAGGATCGAATGTAACC 688
Query 661 ATTAATCAT-TATCTTACTCCTGGAACTCAAGGAATATTTAGCAATGGGGTTATCTATTA 719
| | ||||| | || | || || |||| |||| ||| | || || ||| | |||||
Sbjct 689 A-TGATCATCT-TCCTCCTTCTTTAACTAAAGGGGTATGCATAAACGGTGTTGTTTATTA 746
Query 720 CTT-CGCTAGGGTC--AA-TG-ATGATCAGTCGCTAATGTGCTTTGTTGTGGGGTCTGAA 774
|| ||| || || || || | |||| | | ||| |||||| | || ||||||
Sbjct 747 -TTATGCTTGGATCAAAAGTGAAGGATC-TTTGATAA---GCTTTGATCTGATATCTGAA 801
Query 775 AAGTTTAGTGTCGTTGAGTTACCGAGGCCGGCCGTCGAAGT-TCTAGCGAACTACGGCGA 833
||||| |||| || ||||||| | || || || | |||| ||||||| |
Sbjct 802 GTGTTTAATGTCATTAAGTTACC--TG-AGGATATCCAA-TGCCTAGTGAACTACAATGG 857
Query 834 AAAGATAGCTGTAACGAATTTGTTATATGCTAGTAATGATAGACTTTTTGTATGGATTCT 893
|||||||||| || ||| ||| || || | | | | || |||| | ||| ||||
Sbjct 858 AAAGATAGCTTTAGCGAGTTT-TTGTA----AATTA-GGTACACTTGACCTGTGGGTTCT 911
Query 894 AGAAGATGCCAGCAAACAAGAATGGTCAAACTTTTGTGTCTTGGTTCCTTCTTGG 948
||||||||||||||||||||||||||||| ||| | |||||||||||||||||
Sbjct 912 GGAAGATGCCAGCAAACAAGAATGGTCAAAAGTTTCTCTCTTGGTTCCTTCTTGG 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35644927395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5