BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10800.1
Length=2291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478415 jgi|Araly1|478415|fgenesh2_kg.3__1116__AT3G10800.1 3554 0.0
> Ahg478415 jgi|Araly1|478415|fgenesh2_kg.3__1116__AT3G10800.1
Length=2236
Score = 3554 bits (1924), Expect = 0.0
Identities = 2139/2244 (95%), Gaps = 10/2244 (0%)
Strand=Plus/Plus
Query 1 TTGTTCCAAAGTTATAAACCGTGTGGAACCATCGAGAAGCGAAGCCAGAATAAATTTTCG 60
|||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| ||
Sbjct 1 TTGTTCCAAAGTTAAAAACCGTGTGGAATCATCGAGAAGCGAAGCCAGAAGAAA-AATCA 59
Query 61 AATCCTCCGACGATGACGGAATCAACATCCGTGGTTGCTCCTCCGCCGGAGATACCTAAT 120
|| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 60 AACCCTCCGACGATGACGGAATCAACATTCGTTATTGCTCCTCCGCCGGAGATACCTAAT 119
Query 121 CTGAACCCTAGCATGTTTTCTGAGTCCGATTTGTTTTCTATTCCGCCGCTAGATCCTCTT 180
|||||| |||||||||||||||| |||||| || ||||||||||||||||||||||||||
Sbjct 120 CTGAACTCTAGCATGTTTTCTGAATCCGATATGATTTCTATTCCGCCGCTAGATCCTCTT 179
Query 181 TTCCTATCTGATTCTGATCCGATTTCAATGGATGCGCCAATCTCCGATCTCGACTTCTTA 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 180 TTCCTATCTGATTCTGATCCGATTTCAATGGATGCGCCGATCTCCGATCTCGACTTCTTA 239
Query 241 CTCGACGATGAGAACGGAgatttcgctgattttgatttctcgtttgataattctgatgat 300
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 240 CTCGACGATGAGAACGGAGATTTTGCTGATTTCGATTTCTCGTTTGAGAATTCTGATGAT 299
Query 301 ttcttcgatttcgatttATCGGAGCCCGCGGTGGTGATCCCTGAGGAGATCGGTAACAAT 360
||||||| ||||||||| |||||||||||||||||||||||||||||||||| || | |
Sbjct 300 TTCTTCGCTTTCGATTTGGCGGAGCCCGCGGTGGTGATCCCTGAGGAGATCGGGAATAGT 359
Query 361 CGTTCGAATTTGGACTCATCGGAAAACAGAAGCGGCGATGGAGGTTTAGAAGGAAGATCT 420
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 360 CGTTCGAATTTGGACTCATCGGAGAACAGAAGCGGCGATGGAGGTTTAGAAGGACGATCT 419
Query 421 GAGTCTGTTCATTCACAGGTTTCATCTCAAGGCTCCAAGACTTTTGTGTCCGACACCGTT 480
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 420 GATTCTGTTCATTCTCAGGTTTCATCTCAAGGCTCAAAGACTTTTGTGTCCGACACCGTT 479
Query 481 GACGCATCATCCTCCCCTGAATCAAGCAATCACCAGAAATCTTCTGTTAGCAAGAGGAAG 540
||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 480 GACGCATTATCCTCCCCTGAATCAATCAATCACCAGAAATCTTCTGTCAGCAAGAGGAAG 539
Query 541 AAGGAAAATGGAGACTCCAGTGGCGAATTAAGGAGCTGCAAGTACCAAAAGTCCGATGAT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 540 AAGGAAAATGGAGACTCCAGTGGCGAATTAAGGAGCTGCAAGTACCAAAAGTCTGATGAT 599
Query 601 AAATCAGTCGCTACGAACAACGAAGGTGATGATGACGACGACAAGAGGAAGTTGATAAGG 660
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 600 AAATCAGTCGCTACGAACAACGAAGGTGATGAT---GACGACAAGAGGAAGTTGATAAGG 656
Query 661 CAGATTAGGAACCGTGAAAGTGCTCAGCTTTCGAGGTTGAGGAAGAAGCAACAAACTGAG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CAGATTAGGAACCGTGAAAGTGCTCAGCTTTCGAGGTTGAGGAAGAAGCAACAAACTGAG 716
Query 721 GAGCTTGAAAGAAAAGTGAAGAGTATGAATGCTACCATTGCTGAATTGAATGGTAAGATT 780
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 717 GAGCTTGAAAGAAAAGTGAAGAGTATGAATGCAACCATTGCTGAATTGAATGGTAAGATT 776
Query 781 GCTTATGTTATGGCTGAGAATGTCGCTTTAAGGCAACAAATGGCTGTTGCTTCTGGTGCT 840
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 777 GCTTATGTTATGGCTGAGAATGTAGCTTTAAGGCAACAAATGGCTGTTGCTTCTGGTGCT 836
Query 841 CCTCCTATGAATCCTTATATGGCTGCCCCGCCTTTACCGTATCAATGGATGCCGTATCCG 900
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 837 CCTCCTATGAATCCTTATATGGCTGCACCGCCTTTACCGTATCAATGGATGCCCTATCCG 896
Query 901 CCGTATCCTGTTAGGGGATATGGATCACAGACACCTTTGGTTCCCATTCCTAAGTTAAAT 960
|| |||||||||||||| |||||||||||||| || |||||||||||||| |||||||||
Sbjct 897 CCTTATCCTGTTAGGGGCTATGGATCACAGACTCCATTGGTTCCCATTCCCAAGTTAAAT 956
Query 961 CCTAAGCCTGTCTCGAGTTGTAGACCGAAGAAGGCAGAGAGTAAGAAGAATGAGGGTAAA 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 957 CCTAAGCCTGTCTCGAGTTGTAGACCGAAGAAGGCAGAGAGTAAGAAGAATGAGGGCAAA 1016
Query 1021 AGTAAGCTCAAGAAGGTTGCTAGTATTAGTTTTATTGGAATTCTCTTCTTTGTCTTCTTG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1017 AGTAAGCTCAAGAAGGTTGCTAGTATTAGTTTTATTGGAATTCTCTTCTTTATGTTCTTG 1076
Query 1081 TTTGGTACATTGGTTCCTTTTATGAATGTAAATTTTGGAGGAGAACGTGGAAGCTTTGGC 1140
||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1077 TTTGGTACATTGGTTCCGTTTATGAATGTAAATTATGGAGGAGAAGGTGGAAGCTTTGGC 1136
Query 1141 GGTTTGTCTAAATATGATGGCCACCGGTATTACGATGAACATAAGGGGAGGGTTTTAATG 1200
|||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||
Sbjct 1137 GGTTTGTCTAAATATGATGGTCACCGGTATTACGATGAACATAAGGGGAAGGTTCTAATG 1196
Query 1201 GTCGGCGATGGTTCTGATGTTAGAAGA-AATAGTGGAATTTCTGAAGGAAATATCCATTC 1259
||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 1197 GTCGGCGATGGTTCTGATGTTAGAAGAGAA-AGTGGGATTTCTGAAGGAAATATCCATTC 1255
Query 1260 TAGTAGGATTAGTCATGGTGAGAGAGATAGTTGTGGAGGAGTAGATTATAATGCTCATCC 1319
||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TAGTAGGATAATTCATGGTGATAGAGATAGTTGTGGAGGAGTAGATTATAATGCTCATCC 1315
Query 1320 GAAAGTAGAAGGACGACCAAGTTCGTTGAGCAATGCCAGTGATCCTCTCTTTGCTTCTCT 1379
|||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1316 GAAAGTAGAAGGACGATCAAGTTCATTGAGCAATGCGAGTGATCCTCTCTTTGCTTCTCT 1375
Query 1380 CTATGTCCCAAGAAACGATGGGCTTGTGAAGATCGATGGGAACTTGATAATTCACTCTGT 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 CTATGTCCCAAGAAACGATGGGCTTGTGAAGATCGATGGGAACTTGATAATTCACTCTGT 1435
Query 1440 TTTGGCGAGCGAGAAAGCAAGGGGTTTAGGAAAGAAGAATATCACTGAAACAGTAAAAAC 1499
|||||||||||||||||||| || | |||| ||||||||||||||||||||||| ||||
Sbjct 1436 TTTGGCGAGCGAGAAAGCAACGGCTCTAGGGAAGAAGAATATCACTGAAACAGTCAAAAG 1495
Query 1500 TAAAGAACCGGATTTGACCATTCCTGGTGCACTGTCTTCTGC-ATTAGCTGTTCCGGGGG 1558
||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| ||
Sbjct 1496 TAAAGAACCGGATTTGACCATGCCTGGTGCACTGTCTTCTGCTAT-AGCTGTTCCGGAGG 1554
Query 1559 TAAGAGGAAATGCAGCAATGCTTCCGCATTCAACAGCTCTCTCTTCTGAAGGGAAAAGAC 1618
||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 1555 TAAGAGGAAATGCAGCAATGCATCCACATTCAACGGCTCTCTCTTCTGAAGGGAAAAGAC 1614
Query 1619 TTCACCAATGGTTTCATGAAGGTGGCTCAGGGCCACTAATGGATTACAGCATGTGCACCG 1678
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1615 TTCACCAGTGGTTTCATGAAGGTGGCTCAGGGACACTAATGGATTACAGCATGTGCACCG 1674
Query 1679 AGGTTTTCCAGTTTGATATTGCTCCTGGTGCTATAGTCCCGTCATCAGTCTCCAGCATTT 1738
||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||
Sbjct 1675 AGGTTTTCCAGTTTGATATTGCTCCCGGTGCTATAGTCCCATCATCAGTCTCCAACATTT 1734
Query 1739 CTGCGGAGCATCTCCAAAATGTCACTACCCACGGCAAGAGAATGAAGAACAGGAGAATCC 1798
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1735 CTGCGGAGCATCTCCAAAATGTCACCACCCACGGCAAGAGAATGAAGAACAGGAGAATTC 1794
Query 1799 TTGAGGGACTTCCTGTTTCACTTGTGGCGTCAGAGCTCAATATCACCGGAACCCAGCCAA 1858
| ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| |
Sbjct 1795 TCGAGGGACTTCCTGTTTCACTTGTGGCGTCTGAGCTCAATATTACCGGAACTCAGCCGA 1854
Query 1859 ACAAAGACGCTCAAAATAAGACCTTTAATGGAAACACTAACAAACCCACATCATCATCCT 1918
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 ACAAAGACGCTCAAAACAAGACCTTTAATGGAAACACTAACAAACCCACATCATCATCCT 1914
Query 1919 CCATGGTTGTCTCAGTGTTACTTGATCCAAGAGAGGTCGTTGACTCTGAAACCGACAGAG 1978
||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||
Sbjct 1915 CCATGGTTGTCTCAGTGTTGCTTGATCCAAGAGAGGTCGTCGACTCTGAAAACGACAGAG 1974
Query 1979 TGGTTCCCCCAAACCCAAAATCACTTTCCCGGATCTTTGTGGTGGTGCTTCTTGACAGTG 2038
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 TGGTGCCCCCAAACCCAAAATCACTTTCCCGGATCTTTGTGGTGGTGCTTCTTGACAGTG 2034
Query 2039 TCAAGTACGTTACCTACTCATGCGTTCTTCCTCGATCGGGTCTCCATCTCGTAGCCACCT 2098
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2035 TCAAGTACGTTACCTACTCATGCGTTCTTCCTCGGTCGGGTCTCCATCTCGTAGCCACCT 2094
Query 2099 GATTTGAGCTACTCAGATCTTGACCTTAAGTAGGCGAACATTGACTTGTTTATACATACA 2158
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2095 GATTTGTGCTACTCAGATCTTGACCTTAAGTAGGAGAACATTGACTTGTTTATACATACA 2154
Query 2159 GACCTTGTTGACtttttttCCCTGTGTTGTATAACTCTTATGTTCTAAGGTTTTGGATTT 2218
|||||| ||||||||||||| |||||||||||||| ||||||| ||||||||||| |||
Sbjct 2155 GACCTTAATGACTTTTTTTCC-TGTGTTGTATAACT-TTATGTTTTAAGGTTTTGGTTTT 2212
Query 2219 TAATTTTGAGATAAGCATAAAGTG 2242
|||||||||||||| || ||||||
Sbjct 2213 TAATTTTGAGATAACCAGAAAGTG 2236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86274404925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5