BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10810.1
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317879 jgi|Araly1|317879|fgenesh1_pm.C_scaffold_3000895 2525 0.0
> Ahg317879 jgi|Araly1|317879|fgenesh1_pm.C_scaffold_3000895
Length=2097
Score = 2525 bits (1367), Expect = 0.0
Identities = 1496/1556 (96%), Gaps = 17/1556 (1%)
Strand=Plus/Plus
Query 230 AGGTGGGGTTTCTCTTTGTTGCTATGTCTTGAAACCTTAGTTTGC-TTTTGTCAATGGGT 288
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 547 AGGTGGGGTTTCTCTTTGTTGCTATGGCTTGAAACCTTAGTTTGCTTTTTGTCAATGGGT 606
Query 289 AAAACCGAGGATGATGTGAGTCTCCGTGTCGCCGGCGGCGAAGCTACCGGCGATTCGACG 348
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 607 AAAACCGAGGATGATGTGAATCTCCGTGTCGCCGGCGGCGAAGCTACCGGCGATTCGACG 666
Query 349 GTGAGGAATGCTCGGTGTGGGTGTTGCAAATGGATCTCAAGCTTCGTTGGGTTCAAATGT 408
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GAGAGGAATGCTCGGTGTGGGTGTTGCAAATGGATCTCAAGCTTCGTTGGGTTCAAATGT 726
Query 409 TTATTCGTGCTGCTTTTATCAGTCG-CTTTGTTTCTTTCGGCTTTGTTTTTGTTGCTTCC 467
|| ||||| |||||||| ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 727 TTCTTCGTACTGCTTTTTTCAGT-GTCTTTGTTTCTTTCGGCTTTGTTTTTGTTGCTTCC 785
Query 468 GTTTCCTATGGATCGTGAGGATTCGAATCTTGATCCCAGATTTAGAGGTCATGCTATAGT 527
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 786 GTTTCCTATGGATCGTGAGGATTCGAATCTCGATCCCAGATTTAGAGGTCATGCTATATT 845
Query 528 GGCCAGTTTTAGCATCAATAGATCGGCTTCTTTTCTTAATGAAAATACATTGCAGCTTCA 587
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 846 AGCCAGTTTTAGCATCAATAGATCGGCTTCTTTTCTTAATGATAATACATTGCAGCTTCA 905
Query 588 GAATGACATCTTTCAAGAGATGAGCTACATTTCCATCAAAGTAACTATCCTGGCTGTTGA 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 GAATGACATCTTTCAAGAGATGAGCTACATTTCCATCAAAGTAACTATCCTGGCTGTTGA 965
Query 648 GCCGTCAGATGAATTGAACATAACAAAGGTTGTGTTTGGAATTGACCCTGATACTGGATA 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 GCCGTCAGATGAATTGAACATAACAAAGGTTGTGTTTGGAATTGACCCTGATACTGGATA 1025
Query 708 CCGAGAAATCTTACCTCTGTCCCTGAGTTCTATCAAAGAGATGTTTGAATCGGTGCTCAT 767
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1026 CCGAGAAATCTTACCTCTGTCCTTGAGTTCTATCAAAGAGATGTTCGAATCGGTGCTCAT 1085
Query 768 AAATCAATCTACTCTCCAGCTTACAAAATCCTTGTTTGGGGAAACCTTCCTTTTTGAAGT 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 AAATCAATCTACTCTCCAGCTTACAAAATCCTTGTTTGGGGAAACCTTCCTTTTTGAAGT 1145
Query 828 GCTAAAATTTCCAGGAGGAATCACTGTGATTCCACCACAAAGTGCTTTCCCTCTGCAGAA 887
|||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1146 GCTAAAGTTTCCAGGAGGAATCACTGTGATTCCACCGCAAAGTGTTTTCCCTCTGCAGAA 1205
Query 888 ATTCAAGATTGTTTTCAACTTTACCCTAAACTACTCTATTCACCAGATACAGATAAACTT 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 ATTCAAGATTGTTTTCAACTTTACCCTAAACTACTCTATTCACCAGATACAGATAAACTT 1265
Query 948 CAATACCCTTGCTAGTCAACTCAAAAATGGGCTGAATCTCGCACCATACGAGAATTTGTA 1007
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1266 CAATACCCTTGCTAGTCAACTCAAGAATGGGCTGAATCTCGCACCATACGAGAATTTGTA 1325
Query 1008 TGTAAGCTTATCGAACTCAGAAGGGTCGACCGTGTCTCCCCCGACAACTGTTCACTCATC 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 TGTAAGCTTATCGAACTCAGAAGGGTCGACCGTGTCTCCCCCGACAACTGTTCACTCATC 1385
Query 1068 AGTTTTGCTAAGAGTCGGGACTTCAAATTCAAGCCCAAGGTTGAAACAACTGACTGATAC 1127
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1386 GGTTTTGCTAAGAGTCGGGTCTTCAAATTCAAGCCCAAGGTTGAAACAACTGGCTGATAC 1445
Query 1128 CATCACAGGTTCACGCTCGAAAAACCTTGGCCTGAATAATACCATATTTGGTAAGGTCAA 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 CATCACAGGTTCACGCTCGAAAAACCTTGGCCTGAATAATACCATATTTGGTAAGGTCAA 1505
Query 1188 GCAAGTTCGTCTGTCATCTTTCTTGCCAAACAGCAGTGATAGTAGCACCAAATCTccatc 1247
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1506 GCAAGTTCGTCTTTCATCTTTCTTGCCAAACAGCAGTGATAGTAGCACCAAATCTCCATC 1565
Query 1248 accctcacctagtccccattcgaagca------tcaccatcaccatcaccatcacca--- 1298
|||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 1566 ACCCTCACCTAGTCCCCACTCCAAGCACCACCATCACCATCACCATCACCATCACCACCA 1625
Query 1299 tcaccaccaccaccatcaccatcacaaccatcatcaccaccaccaccacAATCTTAGCCC 1358
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1626 TCACCACCACCACCATCACCATCACAACCATCATCACCACCACCACCACCATCTTAGCCC 1685
Query 1359 GAAAATGGCTCCCGAGGTTTCACCTGTGGCCTCTCCTGCTCCTCACAGAAGCCGTAAGAG 1418
||| ||||||||||||||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 1686 GAATATGGCTCCCGAGGTTTCACCTGTGGCCTCTCCTGCTCCTCAGAGAAGCCGCAGGAG 1745
Query 1419 AGCTCCATCTGCACCTCCACCCTGCAACCCAGGGAATAGAGTACATTTCAAGGAGAAACG 1478
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1746 AGCTCCATCTGCACCTCCACCCTGCAACTCAGGGAATAGAGTACATTTCAAGGAGAAACA 1805
Query 1479 CGTGCAGTTTTC-ATCCACACCTGCGCCTGCTCCTTCTGCTGGGGCACCACATCATCAGC 1537
|||||| ||||| ||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1806 CGTGCA-TTTTCCATCCACACCTGCGCCTGCTCCTTCTACTGGGGCACCACGTCATCAGC 1864
Query 1538 TGCACTCACCGGCCCCAATTTCTGCAGCCAAGTCTCATATAGTTCCAATCTCTGCCCCTC 1597
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1865 TGCACTCACCGGCCCCGATTCCTGCAGCCAAGTCTCATATAGTTCCAATCTCTGCCCCTC 1924
Query 1598 TACCACATGTGGTGTTTGCCCATGCAGCTCAACCACCCATAACGGAACCACGGGAACCAC 1657
||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||| |
Sbjct 1925 TACCACATGTGGTGTTTGCCCATGCAGCTCAACCACCCAAAACCGAACCAAGGGAACCTC 1984
Query 1658 ATGCAAACGAAGTTGCTCATCCTCAACCGCAGTCCTCTTCATCAGCGATTGAGGTTTTAC 1717
| |||||||||| ||||||||||||||||||| |||||||||| | |||| ||||||||
Sbjct 1985 ACGCAAACGAAGCTGCTCATCCTCAACCGCAGACCTCTTCATC-G--ATTGCGGTTTTAC 2041
Query 1718 CAGCTATGCCATGGATTGTCCTTCTCATGCTGATAGTGGCCTGGCTTCATGAATAA 1773
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2042 CAGCTCTGCCATGGATTGTCCTTCTCATGCTGATAGTGGCCGGGCTTCATGAATAA 2097
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66543658015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5