BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10820.2
Length=2211
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317880 jgi|Araly1|317880|fgenesh1_pm.C_scaffold_3000896 989 0.0
Ahg928790 jgi|Araly1|928790|scaffold_301247.1 588 6e-167
Ahg932431 jgi|Araly1|932431|scaffold_400419.1 342 6e-93
> Ahg317880 jgi|Araly1|317880|fgenesh1_pm.C_scaffold_3000896
Length=1242
Score = 989 bits (535), Expect = 0.0
Identities = 650/703 (92%), Gaps = 18/703 (3%)
Strand=Plus/Plus
Query 168 ATGAGACCATCTGTTTCGTTGGATACTTGGAGAGAGTATTTCCGGCGAGGAGATTCTGAT 227
|||| |||||| ||||||||||||| |||||| || ||||||| ||||||||||||||||
Sbjct 1 ATGAAACCATCGGTTTCGTTGGATAATTGGAGGGACTATTTCCAGCGAGGAGATTCTGAT 60
Query 228 ATTTTTGGTATCATTGATCATGCGATTATGGTAGCTGCTGCAGATTGGCCAAAGGAGTTT 287
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATTTTTGGAATCATTGATCATGCGATTATGGTAGCTGCTGCAGATTGGCCAAAGGAGTTT 120
Query 288 AAATCCAGGAGTGATAGAATTGCTGAGCTTCTCTTCTCTTGTAAAGTGAGTCGCTGCATT 347
||||||||||| |||||||||||||||||||| |||||||||| |||||| |||||||||
Sbjct 121 AAATCCAGGAGAGATAGAATTGCTGAGCTTCTATTCTCTTGTAGAGTGAGCCGCTGCATT 180
Query 348 GGTTGTGACCACCTTGAGCTCTCGATAGCTGGAGACGAAGCGG----C---GG-TGGA-G 398
|||||||||||||||||||| ||||| ||||||||||||| || | || || | |
Sbjct 181 GGTTGTGACCACCTTGAGCTGTCGATTGCTGGAGACGAAGAGGCTAACTATGGCTGTAGG 240
Query 399 ATAGTTG-G--AGTTGGCGGCGGCGGTGATAGGGGTGATTCTGGTGTTGCGACGGGTGAA 455
| || | | ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 241 ACGGTGGAGACAGTTGGCGGCGGCGGTGATAGGGATGATTCTGGTGTTGCGACGGATGAT 300
Query 456 GGTGAAGAGGCGTCTGTGAGTGTTGATGAGGTTATGAGGATCAGAGATATCTTGTCGAAC 515
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 301 GGTGAAGAGGCTTCTGTGATTGTTGATGAGGTTATGAGGATCAGAGATATCTTGTTGAAC 360
Query 516 AAAGACGATGAGAAAGATTCTGTGTTACTCGAATCTCTGAGAAAGCTTGAGTCAATGTCT 575
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAAGAAGATGAGCCAGATTCTGTGTTACTCGAATCTCTGAGAAAGCTTGAGTCAATGTCT 420
Query 576 ATGAGTGTGGACATTCTTAAGGATACTGAAATTGGAAAGGCTGTTAATGGTCTGAGGAGA 635
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 ATGAATGTGGACATTCTTAAGGATACTGAAATCGGAAAGGCTGTTAATGGTCTGAGGAGA 480
Query 636 CATAGTTCCGATAAGATTAGCAAACTTGCAAAGACTCTTTTCGCAGAGTGGAAG-AGGCT 694
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 481 CATAGTTCCGATAAGATTAGCAAACTTGCAAAGACTCTTTTCGCAGAGTGGAAGGAG-CT 539
Query 695 GGTGGACCAGTGGATGAACACCCCAGA-GGAAATGGCTGGCACTGAAGGGACGCCAGAGT 753
|||||||||||||||||||||||| || ||||||||| ||| ||||||||||||||||||
Sbjct 540 GGTGGACCAGTGGATGAACACCCC-GAAGGAAATGGCCGGCGCTGAAGGGACGCCAGAGT 598
Query 754 CT-CTAAACCTTTCAGTAATTGATGAAGAAGAAGCCTTTCCTTCTCCTCCACATGATTTA 812
|| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 599 CTGC-AAACCTTTCAGTAATTGATGAAGAAGAAGCATTTCCTTCTCCTCCACATGATTTA 657
Query 813 GATATCTATGCACCTGAACCTAATGGGTTTGAACTTTCTCAGA 855
|||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 658 GATATCTATGCACCTGAACCCAATGGATTTGAACTCTCTCAGA 700
Score = 617 bits (334), Expect = 8e-176
Identities = 442/492 (90%), Gaps = 16/492 (3%)
Strand=Plus/Plus
Query 853 AGATCTTAGATTGTTTGGACTGCGATGGAAATCCTCGTCACAGTGTGGAGTCCAAACATG 912
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 764 AGATCTTAGATTGCCTGGACTGCGATGGAAATCCTCGTCACAGTGTGGAGTCAAAACATG 823
Query 913 AAAG-AAAATCGCAAAGTAGTGCGGGGAGGAGACCCAAGGGAACAAATGATGCAAATGTG 971
|||| ||||| ||||||||| | | |||| ||||| |||| ||||||||||| ||||||
Sbjct 824 AAAGAAAAAT-GCAAAGTAGCGAGAGGAGTAGACCTGAGGGTACAAATGATGCCAATGTG 882
Query 972 GTTGGGAGGTACTGCAATGATCAACAGACGAGGAGAGAAGAAGCTGATGTTAGACCTATG 1031
|||||| ||||| ||| |||||||| | | | ||| |||| || ||||||||||
Sbjct 883 GTTGGGGGGTACAACAAGGATCAACACATTA-G-GAG-AGAA---GA---TAGACCTATG 933
Query 1032 AAGCACTCAGCCACAGATGTTG-TCGAGCCTAAAAGACAAACAAAGCAAAGTAGAGAACA 1090
|||||||||||||| ||| ||| | ||||||| ||||||| |||||||||||||||||||
Sbjct 934 AAGCACTCAGCCACCGATTTTGAT-GAGCCTAGAAGACAACCAAAGCAAAGTAGAGAACA 992
Query 1091 AATGGTATCCGCAATCCAACGAAAACCAACTGCTGTTACTGAGCAAAAGCGGAAACTTGC 1150
||||||| ||||||||||| ||||||| || |||| || |||||||||||||||| ||
Sbjct 993 AATGGTACCCGCAATCCAAAGAAAACCGCCTATTGTTGCTAAGCAAAAGCGGAAACTAGC 1052
Query 1151 TGGACCTCAACAAGATAAACTCAAAGCTCTGGATCCAGACTCAAAGTTTGAGTTTGCAAA 1210
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1053 TGGACCTCAACAAGATAAACTCAAAGCTCTGGATCCAGACGCAAAGTTTGAGTTTGCAAA 1112
Query 1211 GCGGAAACTCCAAGAGAGCTACCACCAACATGAGAATGCTAAGAGACAGAGGACGATACA 1270
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1113 GCGGAAACTCCAAGAGAGCTACCAACAACATGAGAATGCCAAGAGACAGAGGACGATACA 1172
Query 1271 AGTACTGGAAACTATCCCAAAGCAAAATAAAGTTCAGAAACCGCAACTCAAGAGACCCGC 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 AGTACTGGAAACTATCCCAAAGCAAAATAAAGTTCAGAAACCGCAACTCAAGAGACCC-- 1230
Query 1331 CACACGAAGATA 1342
|||||||||||
Sbjct 1231 -ACACGAAGATA 1241
> Ahg928790 jgi|Araly1|928790|scaffold_301247.1
Length=824
Score = 588 bits (318), Expect = 6e-167
Identities = 634/776 (82%), Gaps = 63/776 (8%)
Strand=Plus/Plus
Query 1478 TTTTGGACTCGTACTTGTGCAGATAGATAAAGCAGAGATGGTGGATGAGATGATGATTTT 1537
|||| |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1 TTTT-GACTAGTACTTGTGCAGATGGATAAAGCAGAAATGGTGGATGAGATGATGATTTT 59
Query 1538 CAAGAAGATGAGTGTCCTTCTAACTGAAAAGGATTTTGTTGATGCCATCGTATCTGTTTC 1597
|||||||||||||||||||| ||||||||||||||| ||||||||||||| || |||||
Sbjct 60 CAAGAAGATGAGTGTCCTTCCCACTGAAAAGGATTTTCTTGATGCCATCGTTTCGGTTTC 119
Query 1598 TCTCAAGGACCTTACGAGATCACTCTTTGTCAGGTTCGAGGCCAAGGCTTGCCCTAAGTT 1657
|||| |||| || | ||||||| || ||| | ||||| ||| |||||||||||
Sbjct 120 TCTCCAGGAGCTCAAGAGATCA-TC--CCTCA-----G-GGCCATGGCGTGCCCTAAGTT 170
Query 1658 TGACCTTATCCATAAGACTT-CCGTCGAGACGGTTAGGTGCGTAGGGAAAACC-TTTATG 1715
||||| |||||||| | ||| | | ||||||||||||| |||||||| ||| ||| ||
Sbjct 171 TGACCCTATCCATATGGCTTACAG-GGAGACGGTTAGGTTCGTAGGGACTACCTTTTCTG 229
Query 1716 CATATGCTCTCTAAGGTTTC-TAGAGAGTTTC-CTCCCCGCAATCG-AACTCATCCCG-G 1771
| |||| ||||||||| ||| || |||||||| | |||| | || | ||||||||||| |
Sbjct 230 C-TATGGTCTCTAAGG-TTCTTAAAGAGTTTCGC-CCCCTCGAT-GAAACTCATCCCGTG 285
Query 1772 -T--G--GCCTCCTCTATCAGCGATTTGATCCTACTCACTTGTCTCTTG-C-TCGCCAAC 1824
| | ||||||||| ||||||||||||| || ||||||| | |||| | | | | ||
Sbjct 286 TTCGGTCGCCTCCTCTCTCAGCGATTTGATGTTAGTCACTTGACCCTTGCCGTTG-C-AC 343
Query 1825 AAGTTGCTATATGCAAGGAAACTG------A-T-TCA-C---A-G--TAT-C--C----G 1862
|| || || |||||| || |||| | | ||| | | | | | | | |
Sbjct 344 AA-CTGGTAAATGCAAAGAGACTGTTTTACAGTATCAGCATGAGGTTTGTGCAGCTAATG 402
Query 1863 --C-ATGA-GATTGTGATTCACTGGACAAGTGCAAGCGCCTGAAAGTGGATGCTCTTGGT 1918
| | || ||||||||||||||||||||||||||||||||||| |||| |||||| |||
Sbjct 403 AACAAGGATGATTGTGATTCACTGGACAAGTGCAAGCGCCTGAATGTGGCTGCTCTCGGT 462
Query 1919 TACATGTTTACTATTGCAATGAGA-TGCGCCCCTAGTTTGGCTTATCTCGAAAAGTTCAG 1977
| | || ||||| |||| |||||| | | ||| | |||||||||||||||||||| ||||
Sbjct 463 TGCTTGCTTACTGTTGCTATGAGAATCCTCCCTT-GTTTGGCTTATCTCGAAAAGGTCAG 521
Query 1978 GCAGTACATGGCTCAGGCGAATGAGAAGAATCTGGAAGATGAGACTGCTGCTACTCTGAC 2037
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 522 GCAGTACATGGCTCAGGCGACTGAGAAGAATCTGGAAGATGAGAATGCTGCTACTCTGAC 581
Query 2038 GAACAAGAAGCATGTCGCCCTCTTGGCTGAGGAAGACTGCACAGTCCTTTGCACCCCTCG 2097
|||||||||||||||||||||||| || |||||| |||||| | |||| |||||||||
Sbjct 582 AAACAAGAAGCATGTCGCCCTCTTGTCTAAGGAAGCCTGCACTGGCCTTCACACCCCTCG 641
Query 2098 CTTTGAGT-TTCAAAATGTTGCCGACTTTGTTCTTCCAGAAACT-TTGCGTTGGCTTGAC 2155
|||||| | ||||||||||||||| |||||||||||||||| || |||| | || | ||
Sbjct 642 CTTTGA-TATTCAAAATGTTGCCGGCTTTGTTCTTCCAGAAGCTGTTGC-TCGGGTCGAA 699
Query 2156 GAGTTGGAGCTTCAAGCCAGCTTCAAGCTCCAAGCTAATCAACTGGACTCTGCAAA 2211
||||||| |||| || |||| |||||||||| |||||||||||||||||||||
Sbjct 700 GAGTTGGGGCTTGAATATGGCTTAAAGCTCCAAGATAATCAACTGGACTCTGCAAA 755
> Ahg932431 jgi|Araly1|932431|scaffold_400419.1
Length=406
Score = 342 bits (185), Expect = 6e-93
Identities = 258/293 (88%), Gaps = 6/293 (2%)
Strand=Plus/Plus
Query 1922 ATGTTTACTATTGCAATGAGATGCGCCCCTAGTTTGGCTTATCTCGAAAAGTTCAGGCAG 1981
||||||||| ||||||||||| || | ||||||||| ||||||||||||| ||||| ||
Sbjct 21 ATGTTTACTGTTGCAATGAGAAGCATCACTAGTTTGGTTTATCTCGAAAAGGTCAGGGAG 80
Query 1982 TACATGGCTCAGGCGAATGAGAAGAATCTGGAAGATGAGACTGCTGCTACTCTGACGAAC 2041
||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 81 TACATGGTTCAGGCGACTGAGAAGAATCTGGAAGATGAGAATGCTGATACTCTGACGAAC 140
Query 2042 AAGAAGCATGTCGCCCTCTTGGCTGAGGAAGACTGCACAGT-CCTTTGCACCCCTCGCTT 2100
||||||||||| |||||||||||||||||||||||||||| |||| |||| | |||
Sbjct 141 AAGAAGCATGTTACCCTCTTGGCTGAGGAAGACTGCACAGTACCTTA-CACCTTTGGCTC 199
Query 2101 TGAGT-TTCAAAATGTTGCCGACTTTGTTCT-TCCAGAAACTTTGCGTTGGCTTGACGAG 2158
||| | ||||||||||||||| ||||||| | ||||||||||| |||||||||||| |||
Sbjct 200 TGA-TATTCAAAATGTTGCCGGCTTTGTT-TGTCCAGAAACTTCGCGTTGGCTTGAAGAG 257
Query 2159 TTGGAGCTTCAAGCCAGCTTCAAGCTCCAAGCTAATCAACTGGACTCTGCAAA 2211
||||| | ||||| | ||||||||||||||| |||||||||||||| || |||
Sbjct 258 TTGGAACGTCAAGACGGCTTCAAGCTCCAAGATAATCAACTGGACTGTGTAAA 310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83227185325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5