BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G10820.2 Length=2211 Score E Sequences producing significant alignments: (Bits) Value Ahg317880 jgi|Araly1|317880|fgenesh1_pm.C_scaffold_3000896 989 0.0 Ahg928790 jgi|Araly1|928790|scaffold_301247.1 588 6e-167 Ahg932431 jgi|Araly1|932431|scaffold_400419.1 342 6e-93 > Ahg317880 jgi|Araly1|317880|fgenesh1_pm.C_scaffold_3000896 Length=1242 Score = 989 bits (535), Expect = 0.0 Identities = 650/703 (92%), Gaps = 18/703 (3%) Strand=Plus/Plus Query 168 ATGAGACCATCTGTTTCGTTGGATACTTGGAGAGAGTATTTCCGGCGAGGAGATTCTGAT 227 |||| |||||| ||||||||||||| |||||| || ||||||| |||||||||||||||| Sbjct 1 ATGAAACCATCGGTTTCGTTGGATAATTGGAGGGACTATTTCCAGCGAGGAGATTCTGAT 60 Query 228 ATTTTTGGTATCATTGATCATGCGATTATGGTAGCTGCTGCAGATTGGCCAAAGGAGTTT 287 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATTTTTGGAATCATTGATCATGCGATTATGGTAGCTGCTGCAGATTGGCCAAAGGAGTTT 120 Query 288 AAATCCAGGAGTGATAGAATTGCTGAGCTTCTCTTCTCTTGTAAAGTGAGTCGCTGCATT 347 ||||||||||| |||||||||||||||||||| |||||||||| |||||| ||||||||| Sbjct 121 AAATCCAGGAGAGATAGAATTGCTGAGCTTCTATTCTCTTGTAGAGTGAGCCGCTGCATT 180 Query 348 GGTTGTGACCACCTTGAGCTCTCGATAGCTGGAGACGAAGCGG----C---GG-TGGA-G 398 |||||||||||||||||||| ||||| ||||||||||||| || | || || | | Sbjct 181 GGTTGTGACCACCTTGAGCTGTCGATTGCTGGAGACGAAGAGGCTAACTATGGCTGTAGG 240 Query 399 ATAGTTG-G--AGTTGGCGGCGGCGGTGATAGGGGTGATTCTGGTGTTGCGACGGGTGAA 455 | || | | ||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 241 ACGGTGGAGACAGTTGGCGGCGGCGGTGATAGGGATGATTCTGGTGTTGCGACGGATGAT 300 Query 456 GGTGAAGAGGCGTCTGTGAGTGTTGATGAGGTTATGAGGATCAGAGATATCTTGTCGAAC 515 ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 301 GGTGAAGAGGCTTCTGTGATTGTTGATGAGGTTATGAGGATCAGAGATATCTTGTTGAAC 360 Query 516 AAAGACGATGAGAAAGATTCTGTGTTACTCGAATCTCTGAGAAAGCTTGAGTCAATGTCT 575 ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 AAAGAAGATGAGCCAGATTCTGTGTTACTCGAATCTCTGAGAAAGCTTGAGTCAATGTCT 420 Query 576 ATGAGTGTGGACATTCTTAAGGATACTGAAATTGGAAAGGCTGTTAATGGTCTGAGGAGA 635 |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 421 ATGAATGTGGACATTCTTAAGGATACTGAAATCGGAAAGGCTGTTAATGGTCTGAGGAGA 480 Query 636 CATAGTTCCGATAAGATTAGCAAACTTGCAAAGACTCTTTTCGCAGAGTGGAAG-AGGCT 694 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 481 CATAGTTCCGATAAGATTAGCAAACTTGCAAAGACTCTTTTCGCAGAGTGGAAGGAG-CT 539 Query 695 GGTGGACCAGTGGATGAACACCCCAGA-GGAAATGGCTGGCACTGAAGGGACGCCAGAGT 753 |||||||||||||||||||||||| || ||||||||| ||| |||||||||||||||||| Sbjct 540 GGTGGACCAGTGGATGAACACCCC-GAAGGAAATGGCCGGCGCTGAAGGGACGCCAGAGT 598 Query 754 CT-CTAAACCTTTCAGTAATTGATGAAGAAGAAGCCTTTCCTTCTCCTCCACATGATTTA 812 || | |||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 599 CTGC-AAACCTTTCAGTAATTGATGAAGAAGAAGCATTTCCTTCTCCTCCACATGATTTA 657 Query 813 GATATCTATGCACCTGAACCTAATGGGTTTGAACTTTCTCAGA 855 |||||||||||||||||||| ||||| |||||||| ||||||| Sbjct 658 GATATCTATGCACCTGAACCCAATGGATTTGAACTCTCTCAGA 700 Score = 617 bits (334), Expect = 8e-176 Identities = 442/492 (90%), Gaps = 16/492 (3%) Strand=Plus/Plus Query 853 AGATCTTAGATTGTTTGGACTGCGATGGAAATCCTCGTCACAGTGTGGAGTCCAAACATG 912 ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 764 AGATCTTAGATTGCCTGGACTGCGATGGAAATCCTCGTCACAGTGTGGAGTCAAAACATG 823 Query 913 AAAG-AAAATCGCAAAGTAGTGCGGGGAGGAGACCCAAGGGAACAAATGATGCAAATGTG 971 |||| ||||| ||||||||| | | |||| ||||| |||| ||||||||||| |||||| Sbjct 824 AAAGAAAAAT-GCAAAGTAGCGAGAGGAGTAGACCTGAGGGTACAAATGATGCCAATGTG 882 Query 972 GTTGGGAGGTACTGCAATGATCAACAGACGAGGAGAGAAGAAGCTGATGTTAGACCTATG 1031 |||||| ||||| ||| |||||||| | | | ||| |||| || |||||||||| Sbjct 883 GTTGGGGGGTACAACAAGGATCAACACATTA-G-GAG-AGAA---GA---TAGACCTATG 933 Query 1032 AAGCACTCAGCCACAGATGTTG-TCGAGCCTAAAAGACAAACAAAGCAAAGTAGAGAACA 1090 |||||||||||||| ||| ||| | ||||||| ||||||| ||||||||||||||||||| Sbjct 934 AAGCACTCAGCCACCGATTTTGAT-GAGCCTAGAAGACAACCAAAGCAAAGTAGAGAACA 992 Query 1091 AATGGTATCCGCAATCCAACGAAAACCAACTGCTGTTACTGAGCAAAAGCGGAAACTTGC 1150 ||||||| ||||||||||| ||||||| || |||| || |||||||||||||||| || Sbjct 993 AATGGTACCCGCAATCCAAAGAAAACCGCCTATTGTTGCTAAGCAAAAGCGGAAACTAGC 1052 Query 1151 TGGACCTCAACAAGATAAACTCAAAGCTCTGGATCCAGACTCAAAGTTTGAGTTTGCAAA 1210 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1053 TGGACCTCAACAAGATAAACTCAAAGCTCTGGATCCAGACGCAAAGTTTGAGTTTGCAAA 1112 Query 1211 GCGGAAACTCCAAGAGAGCTACCACCAACATGAGAATGCTAAGAGACAGAGGACGATACA 1270 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 1113 GCGGAAACTCCAAGAGAGCTACCAACAACATGAGAATGCCAAGAGACAGAGGACGATACA 1172 Query 1271 AGTACTGGAAACTATCCCAAAGCAAAATAAAGTTCAGAAACCGCAACTCAAGAGACCCGC 1330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1173 AGTACTGGAAACTATCCCAAAGCAAAATAAAGTTCAGAAACCGCAACTCAAGAGACCC-- 1230 Query 1331 CACACGAAGATA 1342 ||||||||||| Sbjct 1231 -ACACGAAGATA 1241 > Ahg928790 jgi|Araly1|928790|scaffold_301247.1 Length=824 Score = 588 bits (318), Expect = 6e-167 Identities = 634/776 (82%), Gaps = 63/776 (8%) Strand=Plus/Plus Query 1478 TTTTGGACTCGTACTTGTGCAGATAGATAAAGCAGAGATGGTGGATGAGATGATGATTTT 1537 |||| |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1 TTTT-GACTAGTACTTGTGCAGATGGATAAAGCAGAAATGGTGGATGAGATGATGATTTT 59 Query 1538 CAAGAAGATGAGTGTCCTTCTAACTGAAAAGGATTTTGTTGATGCCATCGTATCTGTTTC 1597 |||||||||||||||||||| ||||||||||||||| ||||||||||||| || ||||| Sbjct 60 CAAGAAGATGAGTGTCCTTCCCACTGAAAAGGATTTTCTTGATGCCATCGTTTCGGTTTC 119 Query 1598 TCTCAAGGACCTTACGAGATCACTCTTTGTCAGGTTCGAGGCCAAGGCTTGCCCTAAGTT 1657 |||| |||| || | ||||||| || ||| | ||||| ||| ||||||||||| Sbjct 120 TCTCCAGGAGCTCAAGAGATCA-TC--CCTCA-----G-GGCCATGGCGTGCCCTAAGTT 170 Query 1658 TGACCTTATCCATAAGACTT-CCGTCGAGACGGTTAGGTGCGTAGGGAAAACC-TTTATG 1715 ||||| |||||||| | ||| | | ||||||||||||| |||||||| ||| ||| || Sbjct 171 TGACCCTATCCATATGGCTTACAG-GGAGACGGTTAGGTTCGTAGGGACTACCTTTTCTG 229 Query 1716 CATATGCTCTCTAAGGTTTC-TAGAGAGTTTC-CTCCCCGCAATCG-AACTCATCCCG-G 1771 | |||| ||||||||| ||| || |||||||| | |||| | || | ||||||||||| | Sbjct 230 C-TATGGTCTCTAAGG-TTCTTAAAGAGTTTCGC-CCCCTCGAT-GAAACTCATCCCGTG 285 Query 1772 -T--G--GCCTCCTCTATCAGCGATTTGATCCTACTCACTTGTCTCTTG-C-TCGCCAAC 1824 | | ||||||||| ||||||||||||| || ||||||| | |||| | | | | || Sbjct 286 TTCGGTCGCCTCCTCTCTCAGCGATTTGATGTTAGTCACTTGACCCTTGCCGTTG-C-AC 343 Query 1825 AAGTTGCTATATGCAAGGAAACTG------A-T-TCA-C---A-G--TAT-C--C----G 1862 || || || |||||| || |||| | | ||| | | | | | | | | Sbjct 344 AA-CTGGTAAATGCAAAGAGACTGTTTTACAGTATCAGCATGAGGTTTGTGCAGCTAATG 402 Query 1863 --C-ATGA-GATTGTGATTCACTGGACAAGTGCAAGCGCCTGAAAGTGGATGCTCTTGGT 1918 | | || ||||||||||||||||||||||||||||||||||| |||| |||||| ||| Sbjct 403 AACAAGGATGATTGTGATTCACTGGACAAGTGCAAGCGCCTGAATGTGGCTGCTCTCGGT 462 Query 1919 TACATGTTTACTATTGCAATGAGA-TGCGCCCCTAGTTTGGCTTATCTCGAAAAGTTCAG 1977 | | || ||||| |||| |||||| | | ||| | |||||||||||||||||||| |||| Sbjct 463 TGCTTGCTTACTGTTGCTATGAGAATCCTCCCTT-GTTTGGCTTATCTCGAAAAGGTCAG 521 Query 1978 GCAGTACATGGCTCAGGCGAATGAGAAGAATCTGGAAGATGAGACTGCTGCTACTCTGAC 2037 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 522 GCAGTACATGGCTCAGGCGACTGAGAAGAATCTGGAAGATGAGAATGCTGCTACTCTGAC 581 Query 2038 GAACAAGAAGCATGTCGCCCTCTTGGCTGAGGAAGACTGCACAGTCCTTTGCACCCCTCG 2097 |||||||||||||||||||||||| || |||||| |||||| | |||| ||||||||| Sbjct 582 AAACAAGAAGCATGTCGCCCTCTTGTCTAAGGAAGCCTGCACTGGCCTTCACACCCCTCG 641 Query 2098 CTTTGAGT-TTCAAAATGTTGCCGACTTTGTTCTTCCAGAAACT-TTGCGTTGGCTTGAC 2155 |||||| | ||||||||||||||| |||||||||||||||| || |||| | || | || Sbjct 642 CTTTGA-TATTCAAAATGTTGCCGGCTTTGTTCTTCCAGAAGCTGTTGC-TCGGGTCGAA 699 Query 2156 GAGTTGGAGCTTCAAGCCAGCTTCAAGCTCCAAGCTAATCAACTGGACTCTGCAAA 2211 ||||||| |||| || |||| |||||||||| ||||||||||||||||||||| Sbjct 700 GAGTTGGGGCTTGAATATGGCTTAAAGCTCCAAGATAATCAACTGGACTCTGCAAA 755 > Ahg932431 jgi|Araly1|932431|scaffold_400419.1 Length=406 Score = 342 bits (185), Expect = 6e-93 Identities = 258/293 (88%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 1922 ATGTTTACTATTGCAATGAGATGCGCCCCTAGTTTGGCTTATCTCGAAAAGTTCAGGCAG 1981 ||||||||| ||||||||||| || | ||||||||| ||||||||||||| ||||| || Sbjct 21 ATGTTTACTGTTGCAATGAGAAGCATCACTAGTTTGGTTTATCTCGAAAAGGTCAGGGAG 80 Query 1982 TACATGGCTCAGGCGAATGAGAAGAATCTGGAAGATGAGACTGCTGCTACTCTGACGAAC 2041 ||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 81 TACATGGTTCAGGCGACTGAGAAGAATCTGGAAGATGAGAATGCTGATACTCTGACGAAC 140 Query 2042 AAGAAGCATGTCGCCCTCTTGGCTGAGGAAGACTGCACAGT-CCTTTGCACCCCTCGCTT 2100 ||||||||||| |||||||||||||||||||||||||||| |||| |||| | ||| Sbjct 141 AAGAAGCATGTTACCCTCTTGGCTGAGGAAGACTGCACAGTACCTTA-CACCTTTGGCTC 199 Query 2101 TGAGT-TTCAAAATGTTGCCGACTTTGTTCT-TCCAGAAACTTTGCGTTGGCTTGACGAG 2158 ||| | ||||||||||||||| ||||||| | ||||||||||| |||||||||||| ||| Sbjct 200 TGA-TATTCAAAATGTTGCCGGCTTTGTT-TGTCCAGAAACTTCGCGTTGGCTTGAAGAG 257 Query 2159 TTGGAGCTTCAAGCCAGCTTCAAGCTCCAAGCTAATCAACTGGACTCTGCAAA 2211 ||||| | ||||| | ||||||||||||||| |||||||||||||| || ||| Sbjct 258 TTGGAACGTCAAGACGGCTTCAAGCTCCAAGATAATCAACTGGACTGTGTAAA 310 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83227185325 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5