BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10845.1
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
Ahg891584 jgi|Araly1|891584|Al_scaffold_0007_3570 1563 0.0
Ahg355852 jgi|Araly1|355852|fgenesh1_pg.C_scaffold_7003025 289 4e-77
Ahg355810 jgi|Araly1|355810|fgenesh1_pg.C_scaffold_7002983 274 1e-72
Ahg891335 jgi|Araly1|891335|Al_scaffold_0007_3321 217 2e-55
Ahg937635 jgi|Araly1|937635|scaffold_501826.1 154 2e-36
Ahg906790 jgi|Araly1|906790|Al_scaffold_0003_3918 150 2e-35
> Ahg891584 jgi|Araly1|891584|Al_scaffold_0007_3570
Length=1284
Score = 1563 bits (846), Expect = 0.0
Identities = 1162/1306 (89%), Gaps = 56/1306 (4%)
Strand=Plus/Plus
Query 1 ATGGCCAGTTCTAGCAAGGAAGTTAATTTATGTGGTAAGAGAAATCCGGAAGATGATGAT 60
||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||
Sbjct 1 ATGGCCAGTTCTAGCAAGGAAGTTAATTTATTTGGTAAGCGAAATCCGGACGATGATGAT 60
Query 61 TTGGAGACCAAACCGTTTCTCAAGAAACATAAGGACGAGGAGAAGAAAGAGGAGACACCG 120
||||||||||||||| |||| ||||||||||| | ||||||||| ||| ||||| ||
Sbjct 61 TTGGAGACCAAACCGATTCTGAAGAAACATAA-G--GAGGAGAAG---GAGAAGACAACG 114
Query 121 GAAGGACTTGCTGATAGCCTCCAGCACAAGTCTGATCAAGCTAATTTAATCTCTCTCAAG 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 115 GAAGGACTTGCTGATAGTCTCCAGCACAAGTCTGATCAAGCTAATTTAATCTCACTGAAG 174
Query 181 GAGGAGGAAAGTACTGTGGAAGGACGTGATGACACTCCCGATTTTGTTGAGGCACTGGAA 240
||||||| || || |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 175 GAGGAGG-AA--ACAGTGGAAGGACTTGATGACACTCCCGATTTTGTTGAGGCACTGGAA 231
Query 241 AAGAAGGATGGAGAATGTTTGCTCGATCGCAAGATTTAT-CTTAAAGT-GCCTAAGCTAA 298
|||||| |||| |||| ||||||| |||||||||| || || || || || |||| ||
Sbjct 232 AAGAAGAATGGTGAATATTTGCTCCATCGCAAGATA-ATTCTCAATGTTGC-TAAGATA- 288
Query 299 GCT-CTTCATTGACTCTTCCTACGTACCAAGACTTCCTTCCACGACAAGAAGATGAGACA 357
||| |||||||| ||||||||| |||| |||||| ||||| |||| |||||||||||||
Sbjct 289 GCTTCTTCATTGCCTCTTCCTAAGTACGAAGACTGCCTTCGACGAGGAGAAGATGAGACA 348
Query 358 CCTCCCGCCGATTTTGCTGAGGAAGTTCTCTTTGTTGCCAATCTCTCCCCCCAAACTAAG 417
||||||| |||| |||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 349 CCTCCCG---ATTTCGCTGAGGAAGTTCTCTTTCTTGCCAATCTCTCTCCCCAAACTAAG 405
Query 418 ATATTAGATATCTTCGGTTTCTGTCAA-GATGTTGGAGAAGTTGTTAGTGTTCGACTTAT 476
|||||||||||||||| |||||| ||| ||||||||||||||||| |||| |||||||||
Sbjct 406 ATATTAGATATCTTCGATTTCTG-CAAAGATGTTGGAGAAGTTGTCAGTGCTCGACTTAT 464
Query 477 TGCAAACCATGAGGACAAGCCTGTGGGCTGTGCCTTTGTTGAGTTTCTTTCTGCCAACGA 536
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 465 TGCAAACCATGAGGGCAAGCATGTGGGCTGTGCCTTTGTTGAGTTTCTTTCTGCTATCGA 524
Query 537 AGCAAAGAAGGTGCTGGAAAACAAGAATGGTGAATATTTTCATGGTCATAAGATCATTTT 596
|||||| |||| ||||||||| ||||||||||||||||| || |||||||||| ||||
Sbjct 525 AGCAAATAAGGCGCTGGAAAAGAAGAATGGTGAATATTTGCACAATCATAAGATCTTTTT 584
Query 597 GATGAGAGGACATGGTGAAACTCCCGATTTCGCTGAGCAT---CGACTAATTGTTAACCA 653
||||| |||||||||||||||||||||||| ||||||||| ||||| ||||| |||||
Sbjct 585 GATGAAAGGACATGGTGAAACTCCCGATTTTGCTGAGCATGTTCGACTTATTGTCAACCA 644
Query 654 CACTGGCAAGCATGTGGGCAAGGGATTTGTTGAGTTTGCTTCTGCTAAGGAAGCAGAGAA 713
|| |||||||||||||||| |||||||||||||||||||||| | | |||||||||||
Sbjct 645 CAATGGCAAGCATGTGGGCTGGGGATTTGTTGAGTTTGCTTCTAATGACGAAGCAGAGAA 704
Query 714 TGCGCTGGAAAAGAAGAAGGGTGAATATTTGCAGGATGGCGAGATTTTTCTT-AAGGCGG 772
|||||||| |||||||| ||||||||||||||||||||| ||||||||||| ||| |||
Sbjct 705 GGCGCTGGAGAAGAAGAACGGTGAATATTTGCAGGATGGCAAGATTTTTCTTGAAG-CGG 763
Query 773 CTAACATAGCTCCATTCCCTCCACCCAAGTACGAAGACTACCTTGGACAAGAAAG----- 827
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 764 CTAAGATAGCTCCATTCCCTCCACCCAAGTACGAAGACTACCTTCGACAAGAAAGCCTTC 823
Query 828 AGAT-GAGGCAG------CAGTGGAAGGACTTGCTGAAACTCCCTATTTTGTTGAGG-A- 878
|||| || | || ||||||||||||||||||||||||||||||| ||||||| |
Sbjct 824 AGATAGATGAAGATGGGGCAGTGGAAGGACTTGCTGAAACTCCCTATTTCGTTGAGGTAC 883
Query 879 ---A-GCAAGAAAAAAGACGCTTTTTGTTACCAATCTCCCTCCT-AGAACTAGTATAC-A 932
| ||||||||||||||||| |||||| |||||||||||||| | ||||| ||||| |
Sbjct 884 GTGAAGCAAGAAAAAAGACGCTCTTTGTTGCCAATCTCCCTCCTCA-AACTAATATACCA 942
Query 933 AAGGATGTTGTATTTCTTCCAAGA--CTTT-GAAGTTGTTCGTGTTCGACTTATTGTTGA 989
||| || ||||||||||| |||| || |||||||||||||||||||||||||||||
Sbjct 943 AAG-ATCATGTATTTCTTCAAAGATGCTGGAGAAGTTGTTCGTGTTCGACTTATTGTTGA 1001
Query 990 CCAATCGGG-TAAGCATATGGGCTGTGGCTATTTTGAGTTTGCTTCTGCTAATGAAGCAG 1048
||| | ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 CCA-TAGGGGTAAGCATGTGGGCTGTGGCTATTTTGAGTTTGCTTCTGCTAATGAAGCAG 1060
Query 1049 AGAAGGCGCTGGAACAGAGGAATGGTAAAAGTTTGCGCTATCA-CAAAATCTTTCTTGA- 1106
||||||| |||||||||| |||||||||||||||||||||||| || | ||||||||||
Sbjct 1061 AGAAGGCTCTGGAACAGAAGAATGGTAAAAGTTTGCGCTATCATCATA-TCTTTCTTGAC 1119
Query 1107 GCTGGCTGAGATAGCTCCATACCCTCTCCAACACATGTACAAGCTTGCAGAGAAGCTTTG 1166
| |||||||||||||||||||||||||||||| || |||||| |||| ||||||||||||
Sbjct 1120 G-TGGCTGAGATAGCTCCATACCCTCTCCAACCCAAGTACAACCTTGTAGAGAAGCTTTG 1178
Query 1167 GTACGAAGACAACCTTCTACGAGAATCGAATCTGAAGCAACAGAAGGCAAAATCCAACGG 1226
|||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| ||||
Sbjct 1179 GTACGAAGACTACCTTCTACGAGAACCGAATCTGAAGCAACAGAAGGAAAAATCCGACGG 1238
Query 1227 ATTCTGCGGTAAGAAGATTACCTTCTCTTACGGGGACGACTGCTAG 1272
|||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1239 ATTCTGCGGTAAGAAGATTATCTTCTCTTCCGGGGACGACTGCTAG 1284
> Ahg355852 jgi|Araly1|355852|fgenesh1_pg.C_scaffold_7003025
Length=1905
Score = 289 bits (156), Expect = 4e-77
Identities = 250/294 (85%), Gaps = 11/294 (4%)
Strand=Plus/Plus
Query 344 AAGAAGATGAGACACCTCCCGCCGATTTTGCTGAGGAAGTTCTCTTTGTTGCCAATCTCT 403
||||||||||||||||||| | | ||||| |||| |||| |||||||||||||||||||
Sbjct 794 AAGAAGATGAGACACCTCCTG--G-TTTTGTTGAGAAAGTACTCTTTGTTGCCAATCTCT 850
Query 404 CCCCCCAAACTAAGATATTAGATATCTTCGGTTTCTGTC-AAGATGTTGGAGAAGTTGTT 462
| ||||||||||| |||| ||||||| | |||||| | ||||||||||||||||||||
Sbjct 851 CTCCCCAAACTAAAATATCAGATATCAAAGATTTCTG-CAAAGATGTTGGAGAAGTTGTT 909
Query 463 AGTGTTCGACTTATTGCAAACCATGAG-GACAAGCCTGTGGGCTGTGCCTTTGTTGAGTT 521
|||||||||||||||| |||||| ||| | |||| ||| |||| || ||||||||||||
Sbjct 910 AGTGTTCGACTTATTGTAAACCACGAGTGT-AAGCATGTTGGCTATGGCTTTGTTGAGTT 968
Query 522 T-CTTTCTGCCAACGAAGCAAAGAAGGTGCTGGAAAACAAGAATGGTGAATATTTTCATG 580
| ||| |||| |||| ||| ||||||||||||||||| ||||||||||||||||| || |
Sbjct 969 TGCTT-CTGCTAACGCAGCGAAGAAGGTGCTGGAAAAGAAGAATGGTGAATATTTACACG 1027
Query 581 GTCATAAGATCATT-TTGATGAGAGGACATGGTGAAACTCCCGATTTCGCTGAG 633
||||||||| || ||||||| ||||| || |||| ||||| |||| | ||||
Sbjct 1028 ATCATAAGATT-TTGTTGATGAAAGGACTTGATGAATCTCCCAATTTTGTTGAG 1080
> Ahg355810 jgi|Araly1|355810|fgenesh1_pg.C_scaffold_7002983
Length=1788
Score = 274 bits (148), Expect = 1e-72
Identities = 225/261 (86%), Gaps = 10/261 (4%)
Strand=Plus/Plus
Query 344 AAGAAGATGAGACACCTCCCGCCGATTTTGCTGAGGAAGTTCTCTTTGTTGCCAATCTCT 403
||||||||||||||||| | ||||||||| |||| |||| ||||||||| |||||||||
Sbjct 605 AAGAAGATGAGACACCT--C-CCGATTTTGATGAGAAAGTACTCTTTGTTTCCAATCTCT 661
Query 404 CCCCCCAAACTAAGATATTAGATATCTTCGGTTTCTGTCAA-GATGTTGGAGAAGTTGTT 462
| ||||||||||| |||| ||||||||||| ||||| |||| |||||||||||||||||
Sbjct 662 CTCCCCAAACTAAAATATCAGATATCTTCGATTTCT-TCAATTATGTTGGAGAAGTTGTT 720
Query 463 AGTGTTCGACTTATTGCAAACCATGAGGACAAGCCTGTGGGCTGTGCCTTTGTTGAGTTT 522
|||||||||||||||| ||||||||||| |||| |||||||| || |||||||||||||
Sbjct 721 AGTGTTCGACTTATTGTAAACCATGAGGGTAAGCATGTGGGCTATGGCTTTGTTGAGTTT 780
Query 523 -CTTTCTGCCAACG-AAGCAAAGAAGGTGCTGGAAAACAAGAATGGTGAATATTTTCATG 580
||| |||| ||| || |||| |||| |||||||||||||||||||||||||| ||
Sbjct 781 GCTT-CTGCTAACTTAA-CAAAAAAGGCACTGGAAAACAAGAATGGTGAATATTTGCACA 838
Query 581 GTCATAAGATCATT-TTGATG 600
||||||||| || ||||||
Sbjct 839 ATCATAAGATTTTTCTTGATG 859
> Ahg891335 jgi|Araly1|891335|Al_scaffold_0007_3321
Length=1683
Score = 217 bits (117), Expect = 2e-55
Identities = 206/247 (83%), Gaps = 13/247 (5%)
Strand=Plus/Plus
Query 349 GATGAGACACCTCCCGCCGATTTTGCTGAGGAAGTTCTCTTTGTTGCCAATCTCTCCCCC 408
|||||||||||| | |||||||| |||| |||| ||||||||| |||||||||| |||
Sbjct 451 GATGAGACACCT--C-ACGATTTTGTTGAGCAAGTACTCTTTGTTACCAATCTCTCTCCC 507
Query 409 CAAACTAAGATATTAGATATC-TTCGGTTTCTGTC-AAGATGTTGGAGAAGTTGTTAGTG 466
|||||||| |||| ||||||| | | ||||| || || | |||||||||||||||||||
Sbjct 508 CAAACTAAAATATCAGATATCATGC-ATTTCT-TCAAAAACGTTGGAGAAGTTGTTAGTG 565
Query 467 TTCGACTTATTGCAAACCATGAGGACAAGCCTGTGGGCTGTGCCTTTGTTGAGTTT-CTT 525
|||||||||||| |||||||| || ||||| |||||||| || ||||||||||||| |||
Sbjct 566 TTCGACTTATTGTAAACCATGTGGGCAAGCATGTGGGCTATGGCTTTGTTGAGTTTGCTT 625
Query 526 TCTGCCAACGA-AGCAAAGAAGG-TGCTGGAAAACAAGAATGGTGAATATTTTCATGGTC 583
|||| ||| | |||||||| || | |||||| | | | ||||||||||||| | || ||
Sbjct 626 -CTGCTAAC-ATAGCAAAGATGGCT-CTGGAAGAGATGCATGGTGAATATTTGCTTGATC 682
Query 584 ATAAGAT 590
||| |||
Sbjct 683 ATATGAT 689
Score = 95.3 bits (51), Expect = 1e-18
Identities = 200/266 (75%), Gaps = 33/266 (12%)
Strand=Plus/Plus
Query 885 AAAAAAGACGCTTTTTGTT-ACCAATCTCCCT-CCTAGAACTAGTAT-ACAAAGGAT-GT 940
|||||||| ||| |||||| | ||||||| || || | || || || |||| || |
Sbjct 129 AAAAAAGAAGCTCTTTGTTGA-CAATCTCTCTCCCGA-AATTAAAATGTCAAA-TATCAT 185
Query 941 TGTATTTCTTCCAAGACT-TT-G-A-AGTTGTTCGTGTTCGA-CTTATTGTT-GA-C-CA 992
| ||||||| ||| | | || | | |||||||||||||| | |||||| || || | ||
Sbjct 186 CG-ATTTCTT-CAAAAATGTTGGAAGAGTTGTTCGTGTTC-AGCTTATT-TTAGACCTCA 241
Query 993 ATCGGGTAAGCAT-ATGGGCTGTGGCTATT-TTGAGTTTGCTTCTGCTAATGAAGCAGAG 1050
| | ||||| | ||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 242 A--GAATAAGC-TCGCGGGCTCTGGCT-TTGTTGAGTTTGCTTCTGCTAATGAAGCAGAG 297
Query 1051 AAGG---CGCTGGAACAGAGGAATGGTAAAAGTTTGCGCTATCACAAAATCTTTCTTGA- 1106
|||| |||||||| ||| ||| ||| || ||||| | ||| ||| || ||| ||||
Sbjct 298 AAGGTGGCGCTGGAAGAGAAGAACGGTGAATTTTTGCTCAATCGCAAGATTTTTATTGAA 357
Query 1107 GCTGGCTGAGA-TAGCTCCA-TACCC 1130
|| || ||| | |||||| |||||
Sbjct 358 GCAC-CTAAGACT-GCTCCACTACCC 381
> Ahg937635 jgi|Araly1|937635|scaffold_501826.1
Length=1229
Score = 154 bits (83), Expect = 2e-36
Identities = 138/164 (84%), Gaps = 6/164 (4%)
Strand=Plus/Plus
Query 430 TTCGGTTTCTGTCAA-GATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGCAAACCATGA 488
|||| ||||| |||| |||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 54 TTCGATTTCT-TCAATGATGTTGGAGAAGTTGTTAGTGTTCGACTTATTGTAAACCCCGA 112
Query 489 GGACAAGCCTGTGGGCTGTGCCTTTGTTGAGTTT-CTTTCTGCCAA-CGAAGCAAAGAAG 546
|| |||| |||||||| || ||||||||||||| ||| || || | |||||| | |
Sbjct 113 GGGTAAGCATGTGGGCTATGGCTTTGTTGAGTTTGCTT-CT-CCTTGCTTAGCAAACATG 170
Query 547 GTGCTGGAAAACAAGAATGGTGAATATTTTCATGGTCATAAGAT 590
| ||||||||| ||||||||||||||||| || | |||||||||
Sbjct 171 GCGCTGGAAAAGAAGAATGGTGAATATTTGCACGATCATAAGAT 214
> Ahg906790 jgi|Araly1|906790|Al_scaffold_0003_3918
Length=1443
Score = 150 bits (81), Expect = 2e-35
Identities = 190/238 (80%), Gaps = 26/238 (11%)
Strand=Plus/Plus
Query 961 GAAGTTGTTCGTGTTCGACTTATTGTTGACCAATCGGGTAAGCATATGGGCTGTGGCTAT 1020
||||||||||||| | || ||||||| ||||| | |||| ||||| |||||||| ||| |
Sbjct 1168 GAAGTTGTTCGTGCTGGAGTTATTGTAGACCACTGGGGTGAGCATGTGGGCTGTTGCT-T 1226
Query 1021 T-TTGAGTTTGCTTCTGCTAATGAAGCAGAGAAGGCGCTGGAACAGAG-GAATGGTAAAA 1078
| ||||||||||||||||| |||||||| |||||||| | | || || | | || ||
Sbjct 1227 TGTTGAGTTTGCTTCTGCTGATGAAGCAAAGAAGGCGGT-G--CA-AGTG-A-GG---AA 1277
Query 1079 GTTTGCGCTATCACAAAATCTTTCTTGAGC-TGGCTGAGATAG--C-TCCATACCCTCTC 1134
|| | | | | || | ||| || | | |||||||||||| | |||||||||| ||
Sbjct 1278 ---TG-G-T-T-ATAATTTTTTTGTT-AACGTGGCTGAGATAGATCGTCCATACCCTTTC 1329
Query 1135 CAACAC-ATGTACAAGCTTGCAGAGAAGCTTTGGTACGAAGACAACCTTCTACGAGAA 1191
| || | || |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1330 CGACTCAAT-TACAAGCTTGCAGAGAAGCTTTGGTACGAAGACAACCTTCGACGAGAA 1386
Score = 122 bits (66), Expect = 4e-27
Identities = 76/81 (94%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 679 TTTGTTGAGTTTGCTTCTGCTAAGGAAGCAGAGAATGCGCTGGAAAAGAAGAAGGGTGAA 738
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 853 TTTGTTGAGTTTGCTTCTGCTAACGAAGCAGAGAAGGCGCTGGAAAAGAAGAAGGGTGAA 912
Query 739 TATTTGCAGGATGGCGAGATT 759
|||||||| || ||||||||
Sbjct 913 TATTTGCACAATCGCGAGATT 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47539277499
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5