BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G10860.1

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928793 jgi|Araly1|928793|scaffold_301250.1                        424    4e-118
  Ahg487332 jgi|Araly1|487332|fgenesh2_kg.6__466__AT5G05370.1          279    1e-74 


> Ahg928793 jgi|Araly1|928793|scaffold_301250.1
Length=259

 Score =  424 bits (229),  Expect = 4e-118
 Identities = 250/260 (96%), Gaps = 1/260 (0%)
 Strand=Plus/Plus

Query  59   ATCTGGGAAGAGAAAAAGAAAATGGGGAAGCAGCCGGTGAAATTGAAGGCGGTGGTTTAC  118
            ||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATCTGAGAAGAGAAGAAG-AAATGGGGAAGCAGCCGGTGAAATTGAAGGCGGTGGTTTAC  59

Query  119  GCACTTTCTCCGTTTCAGCAGAAGATCATGACCGGTCTCTGGAAGGATCTGCCGGAGAAG  178
            |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   GCACTTTCGCCGTTCCAGCAGAAGATCATGACCGGTCTCTGGAAGGATCTGCCGGAGAAG  119

Query  179  ATCCACCACAAGGTCTCTGAGAATTGGATCAGCGCCACTCTTCTCGTTACCCCTGTCGTT  238
            ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  ATCCATCACAAGGTCTCCGAGAATTGGATCAGCGCCACTCTTCTCGTTACCCCTGTCGTT  179

Query  239  GGAACCTACTGGTATGCTCAGTATTTCAAGGAACAGGAGAAGCTTGAGCACAGATTCTGA  298
            | |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct  180  GCAACCTACTGGTATGCTCAATACTTCAAGGAACAGGAGAAGCTTGAGCACAGATTCTGA  239

Query  299  AGCATGAAGTCACTCCTTTT  318
            ||||||||||||||||||||
Sbjct  240  AGCATGAAGTCACTCCTTTT  259


> Ahg487332 jgi|Araly1|487332|fgenesh2_kg.6__466__AT5G05370.1
Length=365

 Score =  279 bits (151),  Expect = 1e-74
 Identities = 205/231 (89%), Gaps = 4/231 (2%)
 Strand=Plus/Plus

Query  77   AAAATGGGGAAGCAGCCGGTGAAATTGAAGGCGGTGGTTTACGCACTT-TCTCCGTTTCA  135
            |||||||| |||||||||||||||||||||||||||||||||||  || || ||||||||
Sbjct  25   AAAATGGGAAAGCAGCCGGTGAAATTGAAGGCGGTGGTTTACGCG-TTATCGCCGTTTCA  83

Query  136  GCAGAAGATCATGACCGGTCTCTGGAAGGATCTGCCGGAGAAGATCCACCACAAGGTCTC  195
            ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  84   GCAGAAGATCATGACGGGTCTATGGAAGGATCTGCCGGAGAAGATCCACCACAAGGTCTC  143

Query  196  TGAGAATTGGATCAGCGCCACTCTTCTCGTTAC-CCCTGTCGTTGGAACCTACTGGTATG  254
            |||||||||||||||| | | ||| ||| |  | ||| ||| | |||||||||| |||||
Sbjct  144  TGAGAATTGGATCAGCACTATTCTCCTCCTCGCTCCC-GTCATCGGAACCTACTCGTATG  202

Query  255  CTCAGTATTTCAAGGAACAGGAGAAGCTTGAGCACAGATTCTGAAGCATGA  305
            ||||||| | ||| ||||| |||||||| |||||||| |||| ||||||||
Sbjct  203  CTCAGTACTACAAAGAACAAGAGAAGCTGGAGCACAGGTTCTAAAGCATGA  253



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19115950089


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5