BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G10870.1 Length=1041 Score E Sequences producing significant alignments: (Bits) Value Ahg478421 jgi|Araly1|478421|fgenesh2_kg.3__1122__AT3G10870.1 1363 0.0 > Ahg478421 jgi|Araly1|478421|fgenesh2_kg.3__1122__AT3G10870.1 Length=890 Score = 1363 bits (738), Expect = 0.0 Identities = 843/894 (94%), Gaps = 5/894 (1%) Strand=Plus/Plus Query 1 ACACAGAGCATTCCGTGG-AAAAACCCCAATAAAATCTCAGGCAAATCTCCGGCGTAATC 59 |||||||||| || ||| ||||| ||| ||||||| |||||||| ||||||||||||| Sbjct 1 ACACAGAGCACTCTTTGGAAAAAAACCC-TTAAAATCACAGGCAAAACTCCGGCGTAATC 59 Query 60 GATGGCGGAGGAGAATCAAGAAGAAACCCTAGAACTCAAACCAAGTAGAAAACCACCACA 119 ||||||||||||||||||||||||||| |||| ||||||||| | |||||||||||||| Sbjct 60 AATGGCGGAGGAGAATCAAGAAGAAACCGTAGACCTCAAACCAGGAAGAAAACCACCACA 119 Query 120 CTTTGTGCTAATACATGGCATGAGCTTAGGATCATGGTGCTGGTACAAGATCAAATGTCT 179 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 CTTTGTGCTAATACACGGCATGAGCTTAGGATCATGGTGCTGGTACAAGATCAAATGTCT 179 Query 180 CATGGAAGTCTCTGGCTTCACCGTCACTTGCATCGACCTCAAATCCTCCGGCATCGATTC 239 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 180 CATTGAAGTCTCTGGCTTCACCGTCACTTGTATCGACCTCAAATCCTCCGGCATCGATCC 239 Query 240 TTCATCCGTGGATTCACTCACTACCTTCGACCAATACAACCAACCACTCATCGACTTCCT 299 |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TTCATCCGCCGATTCTCTCACTACCTTCGACCAATACAACCAACCACTCATCGACTTCCT 299 Query 300 CTCCTCTTTCCCCGAACAAGAACAGGTGATACTTGTGGGTCACAGTGCAGGAGGGCTTAG 359 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 CTCCTCTTTCCCCGAGCAAGAACAGGTGATACTTGTGGGTCACAGTGCAGGAGGGCTTAG 359 Query 360 CCTAACGAGTGCGATACAGAGATTCCCTAAGAAGATCTGTCTCGCTGTTTTTATTGGAGC 419 | ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 360 CGTAACGAGCGCGATACAGAGATTCCCTAAGAAGATCTGTCTCGCTGTTTTTATCGGAGC 419 Query 420 TTCGATGCTCAAAAACGGGCTTCAGACAGATGAAGATATGAAAGATGGAGTGCCTGATCT 479 ||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 420 TTCGATGCTCAAATACGGGCTTCAGACCGATGAAGACATGAAAGATGGAGTGCCTGATCT 479 Query 480 ATCAGAACATGGTGATGTCTACGAGCTTGGTTTTGGTCTAGGACCGGAGAATCCTCCCAC 539 ||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| || Sbjct 480 ATCAGAACATGGTGATGTCTACGAGCTCGGTTTTGGTTTAGGACCTGAGAATCCTCCAAC 539 Query 540 CAGTGCTATTATCAAACCTGAATACCGACGAAAACTACTTTACCACATGAGTCCTCAACA 599 ||||||||||||||||||||||| ||| |||||||| || |||||||||||||||||||| Sbjct 540 CAGTGCTATTATCAAACCTGAATTCCGTCGAAAACTCCTATACCACATGAGTCCTCAACA 599 Query 600 GGAATGTTCCTTGGCTGCATTAATGATGAGACCAGCACCAATTTTGGCGTTAACGACAGC 659 ||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||| || Sbjct 600 GGAATGTTCATTGGCTGCACTAATGATGAGACCAGCACCAATCTTGGCGTTAACGACGGC 659 Query 660 AAAACTGGAAGAAGAGGAAAAAGAAAAAGGACAAGAGGAGCAAGTGCCGCGCGTGTACAT 719 ||||||||| | | | ||||| |||| ||||||||||||||||||||||||||||| || Sbjct 660 AAAACTGGACG-A-A-GAAAACGAAACTGGACAAGAGGAGCAAGTGCCGCGCGTGTATAT 716 Query 720 CAAGACGTTACTCGACCGGGTCATGAAACCGGAGCAGCAAGACGCGATGATAAGACGGTG 779 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 CAAGACATTACTCGACCGGGTCATGAAACCGGAGCAGCAAGACGCGATGATAAGACGGTG 776 Query 780 GCCACCTAGCCAAGTTTACGAATTGGAGAGCGACCATTCTCCTTTCTTCTCTAACCCTTT 839 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 777 GCCACCGAGCCAAGTTTACGAATTGGAGAGCGACCATTCTCCTTTCTTCTCTAACCCTTT 836 Query 840 TGTTCTCTTTGGTTTACTCATCAAAGCTGCCGTTTCCGTCGGTTCTATCTAAAA 893 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 TGTTCTCTTCGGTTTACTCATCAAAGCTGCCGTTTCCGTCGGTTCTATCTAAAA 890 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38732883672 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5