BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10870.1
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478421 jgi|Araly1|478421|fgenesh2_kg.3__1122__AT3G10870.1 1363 0.0
> Ahg478421 jgi|Araly1|478421|fgenesh2_kg.3__1122__AT3G10870.1
Length=890
Score = 1363 bits (738), Expect = 0.0
Identities = 843/894 (94%), Gaps = 5/894 (1%)
Strand=Plus/Plus
Query 1 ACACAGAGCATTCCGTGG-AAAAACCCCAATAAAATCTCAGGCAAATCTCCGGCGTAATC 59
|||||||||| || ||| ||||| ||| ||||||| |||||||| |||||||||||||
Sbjct 1 ACACAGAGCACTCTTTGGAAAAAAACCC-TTAAAATCACAGGCAAAACTCCGGCGTAATC 59
Query 60 GATGGCGGAGGAGAATCAAGAAGAAACCCTAGAACTCAAACCAAGTAGAAAACCACCACA 119
||||||||||||||||||||||||||| |||| ||||||||| | ||||||||||||||
Sbjct 60 AATGGCGGAGGAGAATCAAGAAGAAACCGTAGACCTCAAACCAGGAAGAAAACCACCACA 119
Query 120 CTTTGTGCTAATACATGGCATGAGCTTAGGATCATGGTGCTGGTACAAGATCAAATGTCT 179
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTTTGTGCTAATACACGGCATGAGCTTAGGATCATGGTGCTGGTACAAGATCAAATGTCT 179
Query 180 CATGGAAGTCTCTGGCTTCACCGTCACTTGCATCGACCTCAAATCCTCCGGCATCGATTC 239
||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 180 CATTGAAGTCTCTGGCTTCACCGTCACTTGTATCGACCTCAAATCCTCCGGCATCGATCC 239
Query 240 TTCATCCGTGGATTCACTCACTACCTTCGACCAATACAACCAACCACTCATCGACTTCCT 299
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TTCATCCGCCGATTCTCTCACTACCTTCGACCAATACAACCAACCACTCATCGACTTCCT 299
Query 300 CTCCTCTTTCCCCGAACAAGAACAGGTGATACTTGTGGGTCACAGTGCAGGAGGGCTTAG 359
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTCCTCTTTCCCCGAGCAAGAACAGGTGATACTTGTGGGTCACAGTGCAGGAGGGCTTAG 359
Query 360 CCTAACGAGTGCGATACAGAGATTCCCTAAGAAGATCTGTCTCGCTGTTTTTATTGGAGC 419
| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 CGTAACGAGCGCGATACAGAGATTCCCTAAGAAGATCTGTCTCGCTGTTTTTATCGGAGC 419
Query 420 TTCGATGCTCAAAAACGGGCTTCAGACAGATGAAGATATGAAAGATGGAGTGCCTGATCT 479
||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 420 TTCGATGCTCAAATACGGGCTTCAGACCGATGAAGACATGAAAGATGGAGTGCCTGATCT 479
Query 480 ATCAGAACATGGTGATGTCTACGAGCTTGGTTTTGGTCTAGGACCGGAGAATCCTCCCAC 539
||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||
Sbjct 480 ATCAGAACATGGTGATGTCTACGAGCTCGGTTTTGGTTTAGGACCTGAGAATCCTCCAAC 539
Query 540 CAGTGCTATTATCAAACCTGAATACCGACGAAAACTACTTTACCACATGAGTCCTCAACA 599
||||||||||||||||||||||| ||| |||||||| || ||||||||||||||||||||
Sbjct 540 CAGTGCTATTATCAAACCTGAATTCCGTCGAAAACTCCTATACCACATGAGTCCTCAACA 599
Query 600 GGAATGTTCCTTGGCTGCATTAATGATGAGACCAGCACCAATTTTGGCGTTAACGACAGC 659
||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||| ||
Sbjct 600 GGAATGTTCATTGGCTGCACTAATGATGAGACCAGCACCAATCTTGGCGTTAACGACGGC 659
Query 660 AAAACTGGAAGAAGAGGAAAAAGAAAAAGGACAAGAGGAGCAAGTGCCGCGCGTGTACAT 719
||||||||| | | | ||||| |||| ||||||||||||||||||||||||||||| ||
Sbjct 660 AAAACTGGACG-A-A-GAAAACGAAACTGGACAAGAGGAGCAAGTGCCGCGCGTGTATAT 716
Query 720 CAAGACGTTACTCGACCGGGTCATGAAACCGGAGCAGCAAGACGCGATGATAAGACGGTG 779
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 CAAGACATTACTCGACCGGGTCATGAAACCGGAGCAGCAAGACGCGATGATAAGACGGTG 776
Query 780 GCCACCTAGCCAAGTTTACGAATTGGAGAGCGACCATTCTCCTTTCTTCTCTAACCCTTT 839
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GCCACCGAGCCAAGTTTACGAATTGGAGAGCGACCATTCTCCTTTCTTCTCTAACCCTTT 836
Query 840 TGTTCTCTTTGGTTTACTCATCAAAGCTGCCGTTTCCGTCGGTTCTATCTAAAA 893
||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TGTTCTCTTCGGTTTACTCATCAAAGCTGCCGTTTCCGTCGGTTCTATCTAAAA 890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38732883672
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5