BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10880.1
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341221 jgi|Araly1|341221|fgenesh1_pg.C_scaffold_3000984 1441 0.0
> Ahg341221 jgi|Araly1|341221|fgenesh1_pg.C_scaffold_3000984
Length=1017
Score = 1441 bits (780), Expect = 0.0
Identities = 944/1023 (92%), Gaps = 12/1023 (1%)
Strand=Plus/Plus
Query 153 ATGGATTTAATCACAGAAACAGAATCAGAGAATGTTGATGATTCTTCCTTGTGGCTCCAT 212
||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||| |||
Sbjct 1 ATGGATTTAATCACAGAAACAGAATCAGAGATTGTTGCTGATTCCTCCTTGTGGCTGCAT 60
Query 213 AATTCTAAGTCATTAGCAGACATATTAACAGAGATAAATCAGAATGTTCAACA-AATGCT 271
|||||||| ||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 61 AATTCTAAATCATTAGCAGAAATATTAACAGAGATAAATCAGAATGTTCAA-AGAATGCT 119
Query 272 AAGAATGATTGAAGATA--GCA-AACCCGAGTCAACGGAGAAATTTCTTTACTTATATCA 328
||||||||||||||||| | | |||| |||||||||||||||||||| | |||||||||
Sbjct 120 AAGAATGATTGAAGATAGTGAAGAACCTGAGTCAACGGAGAAATTTCTGTGCTTATATCA 179
Query 329 GTCGCTTGGTGAAACTTACAACGACTTGAACCAGGAGCTCCTCAACGGCCTTCTCAAACT 388
||| || |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 180 GTCTCTCGGTGAAACTTACAATGATTTGAACCAGGAGCTCCTCAACGGCCTTCTCAAACT 239
Query 389 GCCATGTTCTCTTGTAACTTCAATGGGTGCATTGAGCACCTTTAAGCCTGATAAGTCTCC 448
||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| ||||||
Sbjct 240 GCCATGTTCCCTTGTAACTTCAATGGGGGCATTGAGCTCCTTTAAGCCTGATATGTCTCC 299
Query 449 TGATTTGGAGTCAGGAGGAACCTCTTACTCATCTCTGAATCACCAAGTGGTCTCAACAAC 508
|||||||||||| |||||| ||||||||||| ||||| |||||| |||||||||||||
Sbjct 300 TGATTTGGAGTC---AGGAACATCTTACTCATCACTGAAGCACCAACTGGTCTCAACAAC 356
Query 509 GAGTAGCGAAAAGTCGCAGAGCTTGAAACTAAATGATGAGGTTGAGAAGAAAGACTCTGC 568
||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||
Sbjct 357 GAGTAGCGAAAAGTCGCAGAGCTTGAAACTACATGGTGAGGTTGAGAAGAACGACTCTGC 416
Query 569 ATTTTTGCTTGCTGATATGTTTTGTGCTGAGCTTGAAACTGCACGGAGAGAACTAGAAGC 628
||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||
Sbjct 417 ATTTTTGCTTGCTGATATGTTTTGTGCCGAGCTTGAAACTGCACGGAGGGAATTAGAAGC 476
Query 629 TAGAAACATAGCCATTGAAACTGAGAAAAGGTATGTGGTTGACTTAGAGAGTAAGCTATC 688
|||||||||| |||||||||||||||||| ||||| |||||||||| |||||||||||
Sbjct 477 AAGAAACATAGACATTGAAACTGAGAAAAGACATGTGCTTGACTTAGAAAGTAAGCTATC 536
Query 689 AGATTC-TGTTTACAAGATTGAGAAATTAGAAAGCGAGCTCGACGAGGTTAAAGAGTGTT 747
|||||| | | ||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 537 AGATTCAAG-TCACAAGATTGAGAATTTGGAAAGCGAGCTCGACGAGGTTAAAGAGTGTT 595
Query 748 TAGGTGTGTCAGAAGCAGAGGTTTCAAAGCTAATGGAAATGTTGAGTGAATGCAAGA-AC 806
|||||||||||||||| || |||||||||||||||||||||||||||| |||||||| |
Sbjct 596 TAGGTGTGTCAGAAGCCGAAGTTTCAAAGCTAATGGAAATGTTGAGTGGATGCAAGACA- 654
Query 807 GAGAAATCGAAACTGCAGACCGATAATGCTGATGACTTGTTAGATAGCCTAAGAGCAGAG 866
|||||| |||||| |||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 655 GAGAAAGCGAAACCGCAGACCGATAATGCTGATGACTTGTTAGATAGCCTGAGAACAGAG 714
Query 867 TTGAGATCAAGAGAAATCCAGATTGAGCAAATGGAGGAGTATTTGAACCAGGTTTTGTGT 926
||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 715 TTGAGATCAAGAGAAATACAAATTGAGCAAATGGAGGAGTATTTGAACCAGGTGTTGTGT 774
Query 927 CTTAATGAAACTGAGATTAAATCTGAGTCAGAAACTGACAAGAATATTGTGGAAGAACTG 986
|||| ||||||||||||| | ||||||||| ||| ||||||||| ||||||||||||||
Sbjct 775 TTTAAAGAAACTGAGATTATAGCTGAGTCAGGAACCGACAAGAATGTTGTGGAAGAACTG 834
Query 987 AGAGCCAAAGTTGAAGTGTTGGAGAAACAAGTGGAGTTGCAGAGAAATGTGATAACAGAA 1046
||||| | |||||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct 835 AGAGCTAGAGTTGAAGTGCTGGAGAAACAAGTGGAGTTGCAGAGGAATGTTATAACAGAA 894
Query 1047 CGAGAGGAGGAGAAAAGAGAGGCTATAAGACAGCTCTGTTTCTCTCTGGATCATTACATG 1106
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 895 CGAGAGGAAGAGAAAAGAGAGGCTATAAGACAACTCTGTTTCTCTCTGGATCATTACATG 954
Query 1107 AACTGATATTTGGAGCTTGTAAGATCACTTTCAGACAAGAAAAAGGTATCCCTTGTTAAG 1166
||| ||||||| |||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct 955 AACAGATATTTAGAGCTTGTAAGATCACTTTCTGACAACAAAAAGGTATGCCTTGTTAAG 1014
Query 1167 TAA 1169
|||
Sbjct 1015 TAA 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52907350305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5