BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10890.1
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903974 jgi|Araly1|903974|Al_scaffold_0003_1102 1882 0.0
Ahg478424 jgi|Araly1|478424|fgenesh2_kg.3__1125__AT3G10900.1 643 0.0
Ahg918530 jgi|Araly1|918530|Al_scaffold_0008_3281 372 4e-102
> Ahg903974 jgi|Araly1|903974|Al_scaffold_0003_1102
Length=1248
Score = 1882 bits (1019), Expect = 0.0
Identities = 1168/1240 (94%), Gaps = 9/1240 (1%)
Strand=Plus/Plus
Query 10 TTGTGTTTTGTCGTGCTTTTAGCAATTCTGATCGCACAAAACTCTAGCGATCTAGGAGTA 69
|||||| || ||||| ||||||| ||| |||||||||||||||||||| |||||||||||
Sbjct 10 TTGTGTCTTATCGTGTTTTTAGCGATTGTGATCGCACAAAACTCTAGCTATCTAGGAGTA 69
Query 70 AAATCTGCGTCGAGTGATGGCTTCGTGAGTAGAAAAGGCGTCCAGTTTATTCTCAATGGG 129
||| ||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 70 AAAGCTGTATCGAGTGATGGGTTCGTGAGTAGGAAAGGCGTCCAATTTATTCTCAATGGG 129
Query 130 AAACCATTTTACGCTAATGGCTTCAATGCCTACTGGCTCGCGTACGAAGCCACCGATTCG 189
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 130 AAACCATTTTATGCTAATGGCTTCAATGCCTACTGGCTCGCGTACGAAGCCACCGATCCG 189
Query 190 ACCACAAGGTTTAAGATCACTTATGTGTTTCAAAATGCAACCATTCACGATTTGACCATC 249
||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||
Sbjct 190 ACCACAAGGTTTAAGATCACTTATGTGTTCCAAAATGCGACCATTCACGGTTTGACCATC 249
Query 250 GTCCGCACTTGGGGGTTCCGCGATGGCGGCTACCGCGCTCTCCAAATTGCCCCTGGTGTC 309
| ||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 250 GCCCGTACCTGGGGGTTCCGCGATGGCGGCTACCGCGCTCTTCAAATCGCCCCTGGTGTC 309
Query 310 TACGATGAAAAAACTTTTCAGGGTTTGGATTTTGCGATAGCGGAAGCAAAAAGACTCGGT 369
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 310 TATGATGAAAAAACTTTTCAGGGTTTGGATTTTGCGATAGCAGAAGCAAAAAGACTCGGC 369
Query 370 ATAAAAATGATAATCACCTTTGTCAATAACTATTCTGACTTTGGAGGGAGGAAACAATAC 429
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 370 ATAAAAATGATTATCACCTTTGTCAATAACTATTCTGACTTCGGTGGGAGGAAACAATAC 429
Query 430 GTTGATTGGGCTAAAAACACAGGCCAAAACGTATCTTCAGATGACGATTTCTACACAAAC 489
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GTGGATTGGGCTAAAACCACAGGCCAAAACGTATCTTCAGATGACGATTTCTACACAAAC 489
Query 490 CCTCTTGTTAAACAGTACTACAAGAACCACGTCAAGACTATGGTGAACAGAGTGAATACA 549
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 CCTCTTGTTAAACAGTACTACAAGAACCACGTCAAGACTATGGTGAACAGAGTGAATACC 549
Query 550 TTTACCAAAGTTG-AGTACAAAGATGAACCAACCATTATGGGTTGGGAGCTTATGAACGA 608
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TTTACCAAAGTTGCA-TACAAAGATGAACCAACCATTATGGGTTGGGAGCTTATGAACGA 608
Query 609 ACCACAATGCAGAGCAGATCCAAGTGGAAAAACCCTTACGGCTTGGATGAATGAAATGGC 668
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 609 GCCACAATGCAGAGCAGATCCAAGTGGAAAAACCCTTATGGCTTGGATTAATGAAATGGC 668
Query 669 TCTTTATGTGAAATCTGTTGACTCAAAGCATCTCCTCTCTACTGGTCTTGAAGGCTTCTA 728
|| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 669 TCCTTATGTGAAATCAGTTGATTCAAAGCATCTCCTCTCTACTGGTCTTGAAGGCTTTTA 728
Query 729 TGGTGACTCATCTCCTCAAAGAAAGACATCTCTAAATCCGGTTGCAGCCAACGTTCTTGG 788
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 729 TGGTGACTCATCTCCTCAAAGAATGACATCTCTAAATCCAGTTGCAGCCAACGTTCTTGG 788
Query 789 AACTGATTTCATCGCTAATCACAAACTCGATGCCATTGATTTCGCATCGATTCACTCTTA 848
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 789 AACTGATTTCATCGCTAATCACAATCTCGATGCCATTGATTTTGCATCGATTCACTCTTA 848
Query 849 CCCCGACTTATGGTTTCCAAACTTGGATGAGAAATCTCGATTAAACTTGTTAAGAAAATG 908
||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 849 CCCTGACTTATGGTTTCCAAACTTGGATGAGAAATCTCGATTGGACTTCTTAAGAAAATG 908
Query 909 GCTCGAATGTC-ACCTTGAAGATGCACAAAACATTCTTAAAAAACCTCTAATCCTAGGAG 967
||||| | | | |||| |||||||| || ||||| ||| ||||||||||||||||||||
Sbjct 909 GCTCGTA-GACCACCTCGAAGATGCTCAGAACATACTTCGAAAACCTCTAATCCTAGGAG 967
Query 968 AATTCGGGAAACCAACGAACACACCAGGCTACACTCAGGCTCAGAGAGACGCAGTGTTCA 1027
|||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 968 AATTCGGGAAGCCAACGAACATACCAGGCTACACTCAGGCTCAGAGAGACGCCGTGTTCA 1027
Query 1028 ACGCAACGTTTGACACCATTTACGAGTCTGCTGAAAAAGGCGGTCCAGCTGCAGGAGCAT 1087
|||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||
Sbjct 1028 ACGCAACGTTTGACACCATTTACGAGTCTGCTCAAAAAGGCGGCCCAGCCGCAGGAGCAT 1087
Query 1088 TGTTTTGGCACGTTATTAGCGATGGCATGAACAACTTTAAAGACCCCCTCTCCATTGTAC 1147
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1088 TGTTTTGGCACGTTATTAGCGATGGCATGAACAACTTTAAAGATCCCCTCTCCATTGTAC 1147
Query 1148 TTAGTGAAAATTCGACTACGGTTAATATTATAACTGAGGAATCACGAAAGCTGGGTTTGA 1207
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1148 TTAGTGAAAATTCGACGACGGTTAATATTATAACTGAGGAGTCACGAAAGCTGGGTTTGA 1207
Query 1208 TTCGTGGAAAAGGAAAGTTATCAAAAA--CTAAAATTTAA 1245
||||||||||||| ||||||||||| |||||||||||
Sbjct 1208 TTCGTGGAAAAGG---GTTATCAAAAAAACTAAAATTTAA 1244
> Ahg478424 jgi|Araly1|478424|fgenesh2_kg.3__1125__AT3G10900.1
Length=1149
Score = 643 bits (348), Expect = 0.0
Identities = 581/692 (84%), Gaps = 22/692 (3%)
Strand=Plus/Plus
Query 538 AGAGTGAATACATTTACCAAAGTTG-AGTACAAAGATGAACCAACCATTATGGGTTGGGA 596
||||||||||||||||| ||||||| | ||||||||||||||| ||||||||| |||| |
Sbjct 466 AGAGTGAATACATTTACTAAAGTTGCA-TACAAAGATGAACCAGCCATTATGGCTTGGCA 524
Query 597 GCTTATGAACGAACCACAATGCAGAGCAGATCCAAGTGGAAAAACCCTTACGGCTTGGAT 656
|||||||||||| |||| |||| | |||||| ||||||||||||||||| |||||||||
Sbjct 525 GCTTATGAACGAGCCACGATGCGGTTCAGATCGAAGTGGAAAAACCCTTATGGCTTGGAT 584
Query 657 GAATGAAATGGCTCTTTATGTGAAATCTGTTGACT-CAAAGCATCTCCTCTCTACTGGTC 715
||||||||||||| ||| || ||||| ||||| | |||| ||||||||||| |||||||
Sbjct 585 TAATGAAATGGCTCCTTACGTAAAATCAGTTGA-TCCAAACCATCTCCTCTCCACTGGTC 643
Query 716 TTGAAGGCTTCTATGGTGACTCATCTCCTCAAAGAAAGACAT-CTCTAAATCCGGT-TGC 773
|||||| ||||||||||||||||||||||||||||||| || |||||||||| || | |
Sbjct 644 ATGAAGGTTTCTATGGTGACTCATCTCCTCAAAGAAAGA-ATACTCTAAATCCAGTGT-C 701
Query 774 AGCCAAC-GTTCTTGGAACTGATTTCATCGCTAATCACAA-ACTCGATGCCATTGATTTC 831
||||||| | ||||| |||||||||| ||||||||||| | | |||||||||||||||
Sbjct 702 AGCCAACAGAG-TTGGAGCTGATTTCATAGCTAATCACAATATT-GATGCCATTGATTTC 759
Query 832 GCATCGATTCACTCTT-ACCCCGACTTATGGTTTCCAAACTTGGATGAGAAATCTCGATT 890
|||||||| |||| | | | ||||||||||| ||||| ||| || |||| ||||||||
Sbjct 760 GCATCGATGCACTGTGGAACT-GACTTATGGTTGCCAAAGTTGAATCAGAACTCTCGATT 818
Query 891 AAACTTGTTAAGAAAATGGCTCGAATGTCACCTTGAAGATGCACAAAACATTCTTAAAAA 950
| || |||||| ||||||| || | ||| | |||||||| || ||||||||||||||
Sbjct 819 GGAGTTCATAAGAAGATGGCTCCAAGGCCACATCGAAGATGCGCAGAACATTCTTAAAAA 878
Query 951 ACCTCTAATCCTAGGAGAATTCGGGAAACCAACGAACACACCAGGCTACACTCAGGCTCA 1010
||||||||| |||| |||||||||| | |||| |||||||||| ||||||| |||| |
Sbjct 879 ACCTCTAATTCTAGCAGAATTCGGGTTAGGAACGGACACACCAGGTTACACTCTGGCTAA 938
Query 1011 GAGAGACGCAGTGTTCAACGCAACGTTTGACACCATTTACGAGTCTGCTG-AAAAAGGCG 1069
|||||||| || |||| | |||| | ||||| |||||||| |||||| | |||||||||
Sbjct 939 TAGAGACGCCGTATTCACCACAACCTATGACATCATTTACGCGTCTGC-GCAAAAAGGCG 997
Query 1070 GTCCAGCTGCAGGAGCATTGTTTTGGCA-CGTTATTAGCGATGGCATGAACAACTTTAAA 1128
|||| || | ||||||||||||||| | | |||||||||| ||||||| ||||||| |
Sbjct 998 GTCCGGCCGTGGGAGCATTGTTTTGGGAAC-TTATTAGCGACGGCATGAGCAACTTTGCA 1056
Query 1129 GACCCCCTC-TCCATTGTACTTAGTGA-AAATTCGACTACGGTTAATATTATAACTGAGG 1186
| ||| || |||||| |||||||||| |||| || | ||||| |||||||||| ||||
Sbjct 1057 GGTCCC-TCCTCCATTATACTTAGTGACAAAT-CGTCGACGGTCAATATTATAAGTGAGC 1114
Query 1187 AATCACGAAAGCTGGGTTTGATTCGTGGAAAA 1218
| ||| ||||||||||||||||| |||| |||
Sbjct 1115 AGTCAAGAAAGCTGGGTTTGATTGGTGGGAAA 1146
Score = 436 bits (236), Expect = 1e-121
Identities = 371/435 (85%), Gaps = 14/435 (3%)
Strand=Plus/Plus
Query 1 ATGAAGTGTTTGTGTTTTGTCGTGCT-TTTAGCAATTCTGATCGCACAAAACTCTAGCGA 59
||||||| |||||||||| | ||| | |||||| ||| ||| ||||| || ||| |
Sbjct 1 ATGAAGTATTTGTGTTTTATTGTG-TCTTTAGCGATTGTGACCGCAC--AA----AGCTA 53
Query 60 TCTAGGAGTAAAATCTGCGTCGAGTGATGGCTTCGTGAGTAGAAAAGGCGTCCAGTTTAT 119
| |||||||| || ||||||||||| |||| |||||||| || || |||||||| |||||
Sbjct 54 TGTAGGAGTAGAAGCTGCGTCGAGTAATGGGTTCGTGAGCAGGAATGGCGTCCAATTTAT 113
Query 120 TCTCAATGGGAAACCATTTTACGCTAATGGCTTCAATGCCTACTGGCTCGCGTACGAAGC 179
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 114 TCTCAATGGGAAACCATTTTACGCCAATGGCTTCAATGCCTACTGGCTAGCGTACGAAGC 173
Query 180 CACCGATTCGACCACAAGGTTTAAGATCACTTATGTGTTTCAAAATGCAACCATTCACGA 239
||||||| || ||||||| |||||||||||| ||||||||||||| ||||| | |||||
Sbjct 174 CACCGATCCGGCCACAAGATTTAAGATCACTAATGTGTTTCAAAACGCAACTAGTCACGG 233
Query 240 TTTGACCATCGTCCGCACTTGGGGGTTCCGCGATGGCGGCT-A--CCGCGCTCTCCAAAT 296
||||||||||| |||||| ||||||||||| ||||||| || | ||||||||||||||
Sbjct 234 TTTGACCATCGCCCGCACCTGGGGGTTCCGAGATGGCGCCTTATACCGCGCTCTCCAAAC 293
Query 297 TGCCCCTGGTGTC-TACGATGAAAAAACTTTTCAGGGTTTGGATTTTGCGATAGCGGAAG 355
||||||||| || ||||||||| | |||||||||| ||||||||||| |||||| ||||
Sbjct 294 AGCCCCTGGT-TCCTACGATGAACACACTTTTCAGGTTTTGGATTTTGTGATAGCCGAAG 352
Query 356 CAAAAAGACTCGGTATAAAAATGATAATCACCTTTGTCAATAACTATTCTGACTTTGGAG 415
|||||||| ||||||||||| |||||||| || |||||||||| | ||||| ||||
Sbjct 353 CAAAAAGAGTCGGTATAAAATTGATAATCCCCCTTGTCAATAATTGGGATGACTACGGAG 412
Query 416 GGAGGAAA-CAATAC 429
||| ||| ||||||
Sbjct 413 GGAAAAAAACAATAC 427
> Ahg918530 jgi|Araly1|918530|Al_scaffold_0008_3281
Length=1296
Score = 372 bits (201), Expect = 4e-102
Identities = 781/1052 (74%), Gaps = 75/1052 (7%)
Strand=Plus/Plus
Query 79 TCGAGTGATGGCTTCGTGAGTA-GAAAAGGCGTCCAGTTTATTCTCAATGGGAAACCATT 137
||||| |||| |||||||| | | ||||| || ||||||| ||||||| || ||| ||
Sbjct 79 TCGAGCAATGGGTTCGTGAGGACG-AAAGGTGTTCAGTTTAGTCTCAAT-GGCTACCCTT 136
Query 138 -TTACGCTAATGGCTTCAATGCCTACTGGCTCGCGTACGAAGCCACCGATTCGA-CCACA 195
||||||||||||||||||||||||||||||| ||||| ||| | ||| | | || ||
Sbjct 137 ATTACGCTAATGGCTTCAATGCCTACTGGCTCATGTACGTTGCCTCTGATCC-ATCC-CA 194
Query 196 A-GGTTTAAGATCACTTAT-GTGTTTCAAA-ATGCAAC-CATTCACG-ATTTGACCATCG 250
| ||| ||||||| | | | |||| || |||| | | || | ||| || | |
Sbjct 195 AAGGTCTAAGATCTCC-ACCGC-TTTCCAAGATGCTTCTCGC-CATGGATTA-ACTGTTG 250
Query 251 -TCCGCACTTGGGGGTTCCGCGATGGCGGCTACCGCGCTCTCCAA-ATTGCCCCTGGTGT 308
|| | || |||| ||| |||||||||| ||| | ||||| || ||| | ||||| |
Sbjct 251 CTC-GAACCTGGGCTTTCAGCGATGGCGGTTACAGGGCTCTTCAGTATT-CTCCTGGA-T 307
Query 309 C-TACGATGAAAAAACT-TTTCAGGGTTTGGATTTTGCGATAGCGGAAGCAAAAAGAC-T 365
| ||| | || | | | |||||||||||||||||||||||||| || |||| ||| | |
Sbjct 308 CCTACAACGAGGATA-TGTTTCAGGGTTTGGATTTTGCGATAGCTGAGGCAAGAAGGCAT 366
Query 366 CGGTATAAAAATGATAATCACCTTTGTCAATAACTATTCTGA-CTTTGGAGGGAGGAAAC 424
|||||||| || ||| ||| ||||| ||||||||| || ||| ||||||||||| |
Sbjct 367 -GGTATAAAGATAATACTCAGCTTTGCCAATAACTACGA-GAGCTTCGGAGGGAGGAAGC 424
Query 425 AATACGTTGATTGGGCTAAAAACACAGGCCAAAACGTATCTTCAGATGACGATTTCTACA 484
|||| || ||||||||| || || ||||| ||| ||||| || ||||| |||| ||
Sbjct 425 AATATGTGGATTGGGCTCGAAGCAGAGGCCGTCCCGTCTCTTCTGAAGACGACTTCTTCA 484
Query 485 CAAACCCTCTTGTTAAACAGTACTACAAGAACCACGTCAAGACTATGGTGAACAGAGTGA 544
|| || ||||||||||| | | |||||||||||| ||| | || || |||||||| | |
Sbjct 485 CAGACTCTCTTGTTAAAGATTTCTACAAGAACCATATCATGGCTGTGCTGAACAGATTCA 544
Query 545 ATACATTTACCAAAGTTGAGTACAAAGATGAACCAACCATTATGGGTTGGGAGCTTATGA 604
|||| || ||||||||| | ||||||||||| ||||||||||||| ||||||||| ||||
Sbjct 545 ATACCTTCACCAAAGTTCATTACAAAGATGACCCAACCATTATGGCTTGGGAGCTCATGA 604
Query 605 ACGAACCACAATGCAGAGCAGATCCAAGTGGAAAAACCCTT-ACGGCTTGGATGAATGAA 663
|||| || | ||| ||||||| |||| |||| || | ||||||||| | ||||
Sbjct 605 ACGAGCCCCGTTGCCCCTCAGATCCTTCCGGAAGAACCATTCA-GGCTTGGATTACTGAA 663
Query 664 ATGGCT-CTTTATGTGAAATCTGTT-GACTCAAAGCATCTCCTCTCTA-CTGGTCTTGAA 720
||| || || |||||||||| | | ||| ||| ||||| || | | |||| || ||
Sbjct 664 ATGACTGCTC-ATGTGAAATC-GCTAGACAGAAACCATCTGCT-TGAAGCTGGCCTCGAG 720
Query 721 GGCTTCTATGGTGACTCATCTCCTCAAAGAAAGACATCTCTAAATCCGGTTGCAGCCAAC 780
|| ||||||||| | || || |||||||| ||||| ||| ||| || || ||||
Sbjct 721 GGTTTCTATGGTCAGTCTTCACCTCAAAGCAAGAC-TCT--AAACCCACCTG--GCCA-- 773
Query 781 GTTCTTGGAACTGATTTCATCGCTAATCACAA-A-CTCGATGCCATTGATTTCGC-ATCG 837
||| | ||||| ||||| ||||| ||| || | | | | || |||||||||| | ||
Sbjct 774 GTT-T-GGAACCGATTTTATCGCCAATAACCGCATCCCCA-GC-ATTGATTTCGTTA-CG 828
Query 838 ATTCACTCTTACCCCGACTTA-TGGTTTCCAAACTTG-GATGAGAAATCTCGATTAAACT 895
||||||||||||| || | | ||||||||| ||| | ||| |||| | | | | |
Sbjct 829 GTTCACTCTTACCCTGA-TGAATGGTTTCCAGACTCAAGC-GAGCAATCCCAAATGGATT 886
Query 896 TGTT-AAGAAAATGGCTCGAATGTCACCT-TG-AAGATGCACAAAACATTCTTAAAAAAC 952
| || || ||| |||||||| | ||| | | |||| ||||| ||| ||||| | ||||
Sbjct 887 TCTTGAACAAA-TGGCTCGAC-G-CACATATCCAAGACGCACAGAACGTTCTTCACAAAC 943
Query 953 CTC-TAATCCTAGGAGAATTCGGGAAACCAACGAACACACCAGGCTACACTC-AGGCTCA 1010
| | |||| ||| ||| || || ||| ||| ||| | |||||| || || | || | ||
Sbjct 944 C-CATAATATTAGCAGAGTTTGGCAAATCAATGAAGAAACCAGGTTATACCCCAG-CACA 1001
Query 1011 GAGAGACGCAGTGTTCAACGCAACGTTTGACACCA---TTTACGAGTCTGCTGAAAA--A 1065
||||||| || |||||| | ||| | ||| || |||||| |||||| |||| |
Sbjct 1002 GAGAGACATTGTCTTCAACAC--CGTGT-ACAGCAAGATTTACGGGTCTGC--AAAACGA 1056
Query 1066 GGCGGTCCAGCTGCAGGAGCATTGTTTTGGCA 1097
|| ||| |||| ||||||| |||||| |||||
Sbjct 1057 GGTGGTGCAGCAGCAGGAGGATTGTTCTGGCA 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46509958740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5