BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G10900.1 Length=1227 Score E Sequences producing significant alignments: (Bits) Value Ahg478424 jgi|Araly1|478424|fgenesh2_kg.3__1125__AT3G10900.1 983 0.0 > Ahg478424 jgi|Araly1|478424|fgenesh2_kg.3__1125__AT3G10900.1 Length=1149 Score = 983 bits (532), Expect = 0.0 Identities = 632/680 (93%), Gaps = 8/680 (1%) Strand=Plus/Plus Query 535 AGAGTGAATACATTTACTAAAGTTGCATACAAAGATGAACCCGCCATTATGGCTTGGCAG 594 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 466 AGAGTGAATACATTTACTAAAGTTGCATACAAAGATGAACCAGCCATTATGGCTTGGCAG 525 Query 595 CTTATGAACGAGCCACGATGCGGTGT-GGATAAG-AGTGGAAAAACCCTTATGGATTGGA 652 |||||||||||||||||||||||| | ||| | ||||||||||||||||||| ||||| Sbjct 526 CTTATGAACGAGCCACGATGCGGT-TCAGAT-CGAAGTGGAAAAACCCTTATGGCTTGGA 583 Query 653 TTAATGAAATGGCTCCTTTTGTAAAATCAGTTGATCCAAACCATCTCCTCTCTACTGGTC 712 |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 584 TTAATGAAATGGCTCCTTACGTAAAATCAGTTGATCCAAACCATCTCCTCTCCACTGGTC 643 Query 713 ATGAAGGTTTCTATGGTGATTCATCTCCTGAAAGAAAGAATTCTCTAAATCCAGTTTCAG 772 ||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |||| Sbjct 644 ATGAAGGTTTCTATGGTGACTCATCTCCTCAAAGAAAGAATACTCTAAATCCAGTGTCAG 703 Query 773 CCAACACAGTTGGAGCTGATTTCATAGCTAATCACAATATCGATGCCATTGATTTCGCAT 832 |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 704 CCAACAGAGTTGGAGCTGATTTCATAGCTAATCACAATATTGATGCCATTGATTTCGCAT 763 Query 833 CGATGCACTGTGGAAGTGACTTATGGTT-TCAAAGGTTGGATCAGAACTCTCGACTGGCC 891 ||||||||||||||| |||||||||||| |||| |||| |||||||||||||| ||| Sbjct 764 CGATGCACTGTGGAACTGACTTATGGTTGCCAAA-GTTGAATCAGAACTCTCGATTGGAG 822 Query 892 TTCATAAAAAGATGGCTTGAAGGCCACATCGAAGATGCGCAGAACATTCTTAAAAAACCT 951 ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 823 TTCATAAGAAGATGGCTCCAAGGCCACATCGAAGATGCGCAGAACATTCTTAAAAAACCT 882 Query 952 GTAATTCTAGCAGAATTTGGGTTAGGATCGGACACACCACGTTACACTCTGGCTAATAGA 1011 |||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 883 CTAATTCTAGCAGAATTCGGGTTAGGAACGGACACACCAGGTTACACTCTGGCTAATAGA 942 Query 1012 GACGGCGTGTTCACCACAACATATGACATCATTTACGCATCTGCGCAAAAAGGCGGTTCG 1071 |||| ||| ||||||||||| ||||||||||||||||| |||||||||||||||||| || Sbjct 943 GACGCCGTATTCACCACAACCTATGACATCATTTACGCGTCTGCGCAAAAAGGCGGTCCG 1002 Query 1072 GCCGCGGGAGCATTGTTTTGGGAGGTTATTAGCGAAGGCATGAGCAACTTTGCAGGTCCC 1131 |||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1003 GCCGTGGGAGCATTGTTTTGGGAACTTATTAGCGACGGCATGAGCAACTTTGCAGGTCCC 1062 Query 1132 TCCTCCATTATACTTAGTGACAAGTCGTCGACGGTTAATATTATAAGTGAGCA-TGCACG 1190 ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | || | Sbjct 1063 TCCTCCATTATACTTAGTGACAAATCGTCGACGGTCAATATTATAAGTGAGCAGT-CAAG 1121 Query 1191 AAAGATGGGTTTGCTTGGTG 1210 |||| |||||||| |||||| Sbjct 1122 AAAGCTGGGTTTGATTGGTG 1141 Score = 654 bits (354), Expect = 0.0 Identities = 404/428 (94%), Gaps = 3/428 (1%) Strand=Plus/Plus Query 1 ATGAAGTGTTTGTGTTTTATCGTGCT-TTTAGCGATTGTGATCGCACAAAGCTATGTAGG 59 ||||||| |||||||||||| ||| | |||||||||||||| |||||||||||||||||| Sbjct 1 ATGAAGTATTTGTGTTTTATTGTG-TCTTTAGCGATTGTGACCGCACAAAGCTATGTAGG 59 Query 60 AGTAGAAGCTGCGCCAAGTGATGGGTTCGTGAGCAGAAATGGCGTCCAATTTATTCTAAA 119 ||||||||||||| | ||| |||||||||||||||| |||||||||||||||||||| || Sbjct 60 AGTAGAAGCTGCGTCGAGTAATGGGTTCGTGAGCAGGAATGGCGTCCAATTTATTCTCAA 119 Query 120 TGGGAAACCATTTTACGCTAATGGCTTCAATGCTTACTGGCTCGCGTACGAAGCTACCGA 179 |||||||||||||||||| |||||||||||||| |||||||| ||||||||||| ||||| Sbjct 120 TGGGAAACCATTTTACGCCAATGGCTTCAATGCCTACTGGCTAGCGTACGAAGCCACCGA 179 Query 180 TCCGACCACAAGATTTAAGATCACTAATGTGTTTCAAAACGCAACTAGTCTCGGTTTGAC 239 |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 180 TCCGGCCACAAGATTTAAGATCACTAATGTGTTTCAAAACGCAACTAGTCACGGTTTGAC 239 Query 240 CATCGCCCGCACCTGGGGGTTCCGCGATGGCGCCATATACCGCGCTCTCCAAACAGCCCC 299 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 240 CATCGCCCGCACCTGGGGGTTCCGAGATGGCGCCTTATACCGCGCTCTCCAAACAGCCCC 299 Query 300 TGGTTCCTACGATGAACAAACGTTTCAGGGTTTGGATTTTGTGATAGCCGAAGCAAAAAG 359 |||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||| Sbjct 300 TGGTTCCTACGATGAACACACTTTTCAGGTTTTGGATTTTGTGATAGCCGAAGCAAAAAG 359 Query 360 AATCGGTATAAAATTGATAATCCTCCTTGTCAATAATTGGGATGACTACGGAGGGAAAAA 419 | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 360 AGTCGGTATAAAATTGATAATCCCCCTTGTCAATAATTGGGATGACTACGGAGGGAAAAA 419 Query 420 A-CAATAC 426 | |||||| Sbjct 420 AACAATAC 427 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45823746234 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5