BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10900.1
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478424 jgi|Araly1|478424|fgenesh2_kg.3__1125__AT3G10900.1 983 0.0
> Ahg478424 jgi|Araly1|478424|fgenesh2_kg.3__1125__AT3G10900.1
Length=1149
Score = 983 bits (532), Expect = 0.0
Identities = 632/680 (93%), Gaps = 8/680 (1%)
Strand=Plus/Plus
Query 535 AGAGTGAATACATTTACTAAAGTTGCATACAAAGATGAACCCGCCATTATGGCTTGGCAG 594
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 466 AGAGTGAATACATTTACTAAAGTTGCATACAAAGATGAACCAGCCATTATGGCTTGGCAG 525
Query 595 CTTATGAACGAGCCACGATGCGGTGT-GGATAAG-AGTGGAAAAACCCTTATGGATTGGA 652
|||||||||||||||||||||||| | ||| | ||||||||||||||||||| |||||
Sbjct 526 CTTATGAACGAGCCACGATGCGGT-TCAGAT-CGAAGTGGAAAAACCCTTATGGCTTGGA 583
Query 653 TTAATGAAATGGCTCCTTTTGTAAAATCAGTTGATCCAAACCATCTCCTCTCTACTGGTC 712
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 584 TTAATGAAATGGCTCCTTACGTAAAATCAGTTGATCCAAACCATCTCCTCTCCACTGGTC 643
Query 713 ATGAAGGTTTCTATGGTGATTCATCTCCTGAAAGAAAGAATTCTCTAAATCCAGTTTCAG 772
||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| ||||
Sbjct 644 ATGAAGGTTTCTATGGTGACTCATCTCCTCAAAGAAAGAATACTCTAAATCCAGTGTCAG 703
Query 773 CCAACACAGTTGGAGCTGATTTCATAGCTAATCACAATATCGATGCCATTGATTTCGCAT 832
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 704 CCAACAGAGTTGGAGCTGATTTCATAGCTAATCACAATATTGATGCCATTGATTTCGCAT 763
Query 833 CGATGCACTGTGGAAGTGACTTATGGTT-TCAAAGGTTGGATCAGAACTCTCGACTGGCC 891
||||||||||||||| |||||||||||| |||| |||| |||||||||||||| |||
Sbjct 764 CGATGCACTGTGGAACTGACTTATGGTTGCCAAA-GTTGAATCAGAACTCTCGATTGGAG 822
Query 892 TTCATAAAAAGATGGCTTGAAGGCCACATCGAAGATGCGCAGAACATTCTTAAAAAACCT 951
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 823 TTCATAAGAAGATGGCTCCAAGGCCACATCGAAGATGCGCAGAACATTCTTAAAAAACCT 882
Query 952 GTAATTCTAGCAGAATTTGGGTTAGGATCGGACACACCACGTTACACTCTGGCTAATAGA 1011
|||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 883 CTAATTCTAGCAGAATTCGGGTTAGGAACGGACACACCAGGTTACACTCTGGCTAATAGA 942
Query 1012 GACGGCGTGTTCACCACAACATATGACATCATTTACGCATCTGCGCAAAAAGGCGGTTCG 1071
|||| ||| ||||||||||| ||||||||||||||||| |||||||||||||||||| ||
Sbjct 943 GACGCCGTATTCACCACAACCTATGACATCATTTACGCGTCTGCGCAAAAAGGCGGTCCG 1002
Query 1072 GCCGCGGGAGCATTGTTTTGGGAGGTTATTAGCGAAGGCATGAGCAACTTTGCAGGTCCC 1131
|||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1003 GCCGTGGGAGCATTGTTTTGGGAACTTATTAGCGACGGCATGAGCAACTTTGCAGGTCCC 1062
Query 1132 TCCTCCATTATACTTAGTGACAAGTCGTCGACGGTTAATATTATAAGTGAGCA-TGCACG 1190
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | || |
Sbjct 1063 TCCTCCATTATACTTAGTGACAAATCGTCGACGGTCAATATTATAAGTGAGCAGT-CAAG 1121
Query 1191 AAAGATGGGTTTGCTTGGTG 1210
|||| |||||||| ||||||
Sbjct 1122 AAAGCTGGGTTTGATTGGTG 1141
Score = 654 bits (354), Expect = 0.0
Identities = 404/428 (94%), Gaps = 3/428 (1%)
Strand=Plus/Plus
Query 1 ATGAAGTGTTTGTGTTTTATCGTGCT-TTTAGCGATTGTGATCGCACAAAGCTATGTAGG 59
||||||| |||||||||||| ||| | |||||||||||||| ||||||||||||||||||
Sbjct 1 ATGAAGTATTTGTGTTTTATTGTG-TCTTTAGCGATTGTGACCGCACAAAGCTATGTAGG 59
Query 60 AGTAGAAGCTGCGCCAAGTGATGGGTTCGTGAGCAGAAATGGCGTCCAATTTATTCTAAA 119
||||||||||||| | ||| |||||||||||||||| |||||||||||||||||||| ||
Sbjct 60 AGTAGAAGCTGCGTCGAGTAATGGGTTCGTGAGCAGGAATGGCGTCCAATTTATTCTCAA 119
Query 120 TGGGAAACCATTTTACGCTAATGGCTTCAATGCTTACTGGCTCGCGTACGAAGCTACCGA 179
|||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||
Sbjct 120 TGGGAAACCATTTTACGCCAATGGCTTCAATGCCTACTGGCTAGCGTACGAAGCCACCGA 179
Query 180 TCCGACCACAAGATTTAAGATCACTAATGTGTTTCAAAACGCAACTAGTCTCGGTTTGAC 239
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 180 TCCGGCCACAAGATTTAAGATCACTAATGTGTTTCAAAACGCAACTAGTCACGGTTTGAC 239
Query 240 CATCGCCCGCACCTGGGGGTTCCGCGATGGCGCCATATACCGCGCTCTCCAAACAGCCCC 299
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 240 CATCGCCCGCACCTGGGGGTTCCGAGATGGCGCCTTATACCGCGCTCTCCAAACAGCCCC 299
Query 300 TGGTTCCTACGATGAACAAACGTTTCAGGGTTTGGATTTTGTGATAGCCGAAGCAAAAAG 359
|||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||
Sbjct 300 TGGTTCCTACGATGAACACACTTTTCAGGTTTTGGATTTTGTGATAGCCGAAGCAAAAAG 359
Query 360 AATCGGTATAAAATTGATAATCCTCCTTGTCAATAATTGGGATGACTACGGAGGGAAAAA 419
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 360 AGTCGGTATAAAATTGATAATCCCCCTTGTCAATAATTGGGATGACTACGGAGGGAAAAA 419
Query 420 A-CAATAC 426
| ||||||
Sbjct 420 AACAATAC 427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45823746234
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5