BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10912.1
Length=1109
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478427 jgi|Araly1|478427|fgenesh2_kg.3__1128__AT3G10910.1 1352 0.0
> Ahg478427 jgi|Araly1|478427|fgenesh2_kg.3__1128__AT3G10910.1
Length=1008
Score = 1352 bits (732), Expect = 0.0
Identities = 942/1033 (91%), Gaps = 56/1033 (5%)
Strand=Plus/Plus
Query 107 AGAGTCGCCCATAAATTCATTTATGACTC-CTTTTATCACAATCTTGCCATAAATATTTT 165
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1 AGAGTCGCCCATAAATTCATTTATGACTCTTTTTTATCACAATCTTGACATAAATATTTT 60
Query 166 TGCCTCCTCC-CATCTTTACACACAAGTCACG----A-G-GA-AGAAGCAAATCAG--AA 215
||||||| || ||||||||||||||||||||| | | || |||| |||||||| ||
Sbjct 61 TGCCTCC-CCTCATCTTTACACACAAGTCACGACTCACGAGACAGAAACAAATCAGAAAA 119
Query 216 AAAGATCAAAGCTCAGAAATAAAGAGTACAGAGATTAATTCATTAAGAG-TTTTTAAGAA 274
|||||||||||||||||||| |||||| |||||||||||| ||| |||| ||||||||||
Sbjct 120 AAAGATCAAAGCTCAGAAATGAAGAGTGCAGAGATTAATTAATTGAGAGTTTTTTAAGAA 179
Query 275 C---A---TGAGGGATATCGATTCTCTCTTCTCCATCTCTTTTGTCATTCGATTTGTCCA 328
| | |||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 180 CATGAGGGTGAGGGATATCGATTCTCTCTTGTCCATCTCTTTTGTCATTCGATTTGACCA 239
Query 329 ACAAGACGAGTCTTGAA-GGTGAAGTGATCAAGCtttttttttCCTTCTCTCCTCTGCTT 387
|| | |||| | ||| ||||| | | ||| | |||||||||||||||
Sbjct 240 AC-A-ACGA--CACGAATCTTGAAG-G-TGAAG---------T--TTCTCTCCTCTGCTT 282
Query 388 CTCAAGCGTACCTCAAAAGATGGGTCGGTTGCTACTTGAGCCGCAAGCAAACGCACCCGC 447
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 283 CTCAAGCGTACCTCAAAAGATGGGTCGGTTGCTACTTGAGCCACAAGCAAACGCACCCGC 342
Query 448 CAACGCAAACCCTAAACCCAAAGGAGGCATAAACGACACCTACTTCGACACTAACATGGT 507
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 343 CGACGCAAACCCTAAACCCAAAGGAGGCATAAACGATACCTACTTCGACACTAACATGGT 402
Query 508 TATCATTTTAGCTGCTTTACTCTGCGCTTTAATCTGTGCTCTAAGCCTCAACTCTGCCTT 567
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 CATCATTTTAGCTGCTTTACTCTGCGCTTTAATCTGTGCTCTAAGCCTCAACTCTGCCTT 462
Query 568 GCGATGTGTGCTACGCATAACTCGGAGATTCACTTCGGATGATCAAGTCTCAAACGCTTC 627
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 463 GCGATGTGTGCTACGCATAACTCGGAGATTCACTTCGGATGATCAAGTCGCAAACGCTTC 522
Query 628 AAACGCAAACGCAAATTTGGGACGTTTAGCGGCTGCCAC-GGGTCTCAAGAAACAGGCGT 686
||||||||||||||||| |||||||||||||| |||| ||| ||||||||||||||||
Sbjct 523 AAACGCAAACGCAAATTCAAGACGTTTAGCGGCTACCACAGGG-CTCAAGAAACAGGCGT 581
Query 687 TGAAACAAATCCCCGTGGGACTGTACGGATCAGGAATCATAGACATGAAAGCTACGGAGT 746
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 582 TGAAACAAATCCCCGTGGGATTGTACGGATCAGGAATCATTGACATGAAAGCTACGGAGT 641
Query 747 GTTTGATCTGTCTGGGAGATTTCGAAGATGGAGAAAAAGTTAGGGTTTTACCTAAATGTA 806
||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 642 GTTTGATCTGTCTCGGAGATTTCGAAGACGGGGAAAAAGTTAGGGTTTTGCCTAAATGTA 701
Query 807 ACCATGGCTTCCACGTGAGGTGCATCGATACTTGGTTGCTCTCACGTTCCTCTTGCCCCA 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 ACCATGGCTTCCACGTGAGGTGCATCGATACTTGGTTGCTCTCACGTTCCTCTTGCCCCA 761
Query 867 CTTGTAGACAATCGCTACTCCTTGA-G--CAGCCTTCGCCGATGGCTGTTTCCCGGCGGG 923
|||||||||||||| |||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 762 CTTGTAGACAATCGATACTCCTTGATGAGCAGCCGTCGCCGATGGCTGTTTCCCGGCGGG 821
Query 924 ACGAGGACATGGTAGTTTCCATCGTATAGGGACATGATCGGTGATTTCTTAATTATGCTC 983
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 822 ACGAGGACATGGTAGTTTCCATCGTATAGGGACATGAT-GGTGATTTCTTAACTATGCTC 880
Query 984 TCTCAAGTGGGCTTGGTTTTTGTTGGTTGG----A-A-TTGTTTGT--GTGTGTGCAAAC 1035
|||||||||||||||||||||||||||||| | | |||||| | ||||||||||||
Sbjct 881 TCTCAAGTGGGCTTGGTTTTTGTTGGTTGGTTTCATAATTGTTTTTTTGTGTGTGCAAAC 940
Query 1036 TAATGTGATTTATTTTCACATATTCTTGTTCTGATGAATTTAATTAGTGTGATGGGTTTT 1095
|||||||||| |||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 941 TAATGTGATT-ATTTACACATATTCTTGTTCTGGTGAATTTA----GTGTGATGGGTTTT 995
Query 1096 CTTGAAATCAAGC 1108
|||||||||||||
Sbjct 996 CTTGAAATCAAGC 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41325242028
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5