BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10915.5
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903977 jgi|Araly1|903977|Al_scaffold_0003_1105 926 0.0
> Ahg903977 jgi|Araly1|903977|Al_scaffold_0003_1105
Length=675
Score = 926 bits (501), Expect = 0.0
Identities = 543/564 (96%), Gaps = 0/564 (0%)
Strand=Plus/Plus
Query 478 GCTGCTGACTTGCTCTTATGGAGGAGGCGACATCTTTCTTTGGGGGTTATCATTATATCA 537
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 112 GCTGCTGACTTGCTCTTATGGAGGAGACGACATCTTTCTTTGGGTGTTATCATTATATCA 171
Query 538 ACTGTAGCCTGGCTTATATTCGAGTTTTCCGGGTTGCCTTTCTTATCTGTTTCTTCGGAT 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 172 ACTGTAGCCTGGCTTATATTCGAGTTTTCCGGGTTGCCTTTCTTATCTGTTTCTTCAGAT 231
Query 598 GTCTTACTCATCGTGATCATGATATCATTCGTTCATGCCCGGGTTTCTGCTTTTAGGAAT 657
||||||||||||| |||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 232 GTCTTACTCATCGGGATCATAATATCGTTCGTCCATGCCCGGGTTTCTGCTTTTAGGAAA 291
Query 658 AGACAGTTGCATTCGTTGCCAGAGCTTGTTCTATCAGAGGAAATGGTGAATAGTGCTGCA 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 292 AGACAGTTGCATTCGTTGCCAGAGCTTGTTCTATCAGAGGAAATGGTGAATAGTGCCGCA 351
Query 718 GCTTCTTTCCGTATAAAACTCAATCACTTGCTTGTAATGGCTCATGATGTCACAGTTGGC 777
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 352 GCTTCGTTCCGTATAAAACTCAATCACTTGCTTGTAATGGCTCATGATATCACAGTTGGC 411
Query 778 AACGATTTTCGACTCTTCTTCAAGCAGGTGGTGATTTGTCTGTGGCTTCTCTCTGCCATT 837
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 412 AATGATTTTCGACTCTTCTTCAAGCAGGTGGTGATTTGTCTGTGGCTTCTTTCTGCCATT 471
Query 838 GGTAGCTATATATCTCTCTGCACTCTTCTTTACATCGGGACCATCCTATCTGTAACAATA 897
||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||
Sbjct 472 GGTAGCTATATATCTCTCTGCACTCTTGTTTATATCGGGACAATCCTATCTGTAACAATA 531
Query 898 CCGGCTTTGTACAGTAAATATCAAAGCAAAGTAGACAAGTGTTGCGGGACGATTCACAGG 957
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 532 CCCGCTTTGTACAGTAAATATCAAAGCAAAGTAGACAAGTGTTGCGGGACGATACACAGG 591
Query 958 CGGTTGTCTCACCACTACAAAATAGTAGACGAAAATGTTATAAGCAGACTCTCATGGAGC 1017
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 592 CGGTTGTCTCACCACTACAAAATAGTGGACGAAAATGTTATAAGCAGACTCTCATGGAGC 651
Query 1018 TTATCCAAGGATAAAGATTCATGA 1041
||| |||| |||||||||||||||
Sbjct 652 TTAACCAACGATAAAGATTCATGA 675
Score = 176 bits (95), Expect = 3e-43
Identities = 106/111 (95%), Gaps = 2/111 (2%)
Strand=Plus/Plus
Query 292 ATGGATAGTTTAAGTGATATCGATGGTGATTTCGATGGAAGAAATGAAGGAGGATCGTCA 351
||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGACAGTTTAAGTGACATCGATGGTGATTGCGATGGAAGAAATGAAGGAGGATCGTCA 60
Query 352 TCGGATTATCGATTGTTGGGTCGGCA-GATTACGGTTCATCAGTTCATGGG 401
|||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 61 TCGGATTATCGATTGTTGGGTCGGCAAG-TTACGGTTCATCAGTTCATGGG 110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43536371214
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5