BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G10930.1

Length=703
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478434 jgi|Araly1|478434|fgenesh2_kg.3__1135__AT3G10930.1         492    2e-138


> Ahg478434 jgi|Araly1|478434|fgenesh2_kg.3__1135__AT3G10930.1
Length=508

 Score =  492 bits (266),  Expect = 2e-138
 Identities = 359/402 (89%), Gaps = 14/402 (3%)
 Strand=Plus/Plus

Query  167  ATCTT-CTCCGGAGAGATCCCTCCTGTTTCTAAGTCGGCGGTGGTTGGTTGCGGAGGCGA  225
            ||||| | ||||||| || |||||||||||||||||| ||| ||| ||||||||| | ||
Sbjct  88   ATCTTAC-CCGGAGA-ATACCTCCTGTTTCTAAGTCGACGGCGGTGGGTTGCGGA-G-GA  143

Query  226  GCAGGAGACCAAGACGGAATATTCTTCTTTTGTTCCTGAAGTTGTCGCCGGAAAGTTCGG  285
            ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  144  GCAGGAGACGAAGACGGAATACTCTTCTTTTGTTCCTGAAGTTGTCGCCGGAAAGTTCGG  203

Query  286  GTCCTTGGTGTTGAATGCTCTTCCGAAAGGGAGTCGTCCGGGGTCTGGACCCAGCAAGAA  345
             ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct  204  CTCCTTGGTGTTGAATGCTCTTCCGAAAGGGAATCGTCCGGGGTCTGGGCCCAGCAAGAA  263

Query  346  AACTAACGACGTCAAGACTTAGCACTATTCTTTCTAGAGTTTTCTGTCCTAAttcttact  405
            |||||||||||||||||||||| ||| |||||| | ||||||||||||||||||||||||
Sbjct  264  AACTAACGACGTCAAGACTTAGAACTGTTCTTTGTCGAGTTTTCTGTCCTAATTCTTACT  323

Query  406  tctttctttttttgttctttagagattctttgatttttcgttttcAAATAGAGATTATTG  465
            | ||| |||    || ||||||||||||||||||||||| |||||| ||||||||| |||
Sbjct  324  T-TTT-TTT----GTCCTTTAGAGATTCTTTGATTTTTCATTTTCATATAGAGATTCTTG  377

Query  466  TAAATGTTACATGTATTACAGAAATTTACAGTAGAAGTTTAGGAAAAATGAGGATTTTAT  525
            |||||||||||||||||||||||| ||||  ||| |||||| ||||||| ||||||||||
Sbjct  378  TAAATGTTACATGTATTACAGAAAATTACTCTAGTAGTTTACGAAAAATTAGGATTTTAT  437

Query  526  TTGGTAATGT--AAGTCGAAATGATCAAGACTTAGACTATCA  565
            ||||| || |  || ||||||||||||| | | ||| |||||
Sbjct  438  TTGGTCATTTTTAA-TCGAAATGATCAAAAATCAGATTATCA  478



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25847337726


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5