BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10950.1
Length=279
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928806 jgi|Araly1|928806|scaffold_301263.1 427 2e-119
> Ahg928806 jgi|Araly1|928806|scaffold_301263.1
Length=324
Score = 427 bits (231), Expect = 2e-119
Identities = 263/279 (94%), Gaps = 0/279 (0%)
Strand=Plus/Plus
Query 1 ATGACCAAGAGAACGAAGAAGGCTAGAATTGTCGGAAAATATGGTACACGATATGGTGCC 60
|||||||||||||||||||||||| |||| ||||| |||||||||||| |||||||||||
Sbjct 26 ATGACCAAGAGAACGAAGAAGGCTGGAATCGTCGGCAAATATGGTACAAGATATGGTGCC 85
Query 61 AGTCTTAGGAAGCAGATCAAGAAGATGGAAGTGAGTCAACACAACAAGTACTTCTGTGAG 120
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||
Sbjct 86 AGTCTTAGGAAGCAGATCAAGAAGATGGAAGTGAGTCAACACAGCAAATACTTCTGCGAG 145
Query 121 TTCTGCGGAAAGTACTCCGTTAAGAGGAAAGTTGTTGGCATTTGGGGGTGCAAAGATTGC 180
|| ||||| |||||| ||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 146 TTTTGCGGCAAGTACGCCGTTAAGAGGAAAGCTGTTGGCATTTGGGGTTGCAAAGATTGC 205
Query 181 GGGAAAGTGAAAGCAGGCGGTGCATACACAATGAACACGGCTAGTGCTGTGACTGTTAGG 240
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 206 GGAAAAGTGAAAGCAGGCGGTGCATACACTATGAACACGGCTAGTGCTGTGACTGTTAGG 265
Query 241 AGTACCATCAGGCGGTTGAGAGAGCAAACCGAGAGCTAG 279
|||||||| ||||| ||||||||||||||||||||||||
Sbjct 266 AGTACCATTAGGCGTTTGAGAGAGCAAACCGAGAGCTAG 304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9729675195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5