BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10960.1
Length=2185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478437 jgi|Araly1|478437|fgenesh2_kg.3__1138__AT3G10960.1 3277 0.0
Ahg896713 jgi|Araly1|896713|Al_scaffold_0005_679 861 0.0
Ahg952636 jgi|Araly1|952636|scaffold_98600001.1 560 1e-158
Ahg949166 jgi|Araly1|949166|scaffold_801053.1 560 1e-158
Ahg949407 jgi|Araly1|949407|scaffold_801294.1 431 1e-119
> Ahg478437 jgi|Araly1|478437|fgenesh2_kg.3__1138__AT3G10960.1
Length=2170
Score = 3277 bits (1774), Expect = 0.0
Identities = 2035/2155 (94%), Gaps = 41/2155 (2%)
Strand=Plus/Plus
Query 49 AAGAATCGTGGACACATGGTTACATGTGAGATACTTCTAC-CTAAAGATCCCATTCCTCT 107
|||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 29 AAGAATCGTGGACACATGGTTACATGTGAGATACTTGT-CTCTAAAGATCCCATTCCTCT 87
Query 108 TAACCAGAATCTTTTCCTCTTTCTCTAATCATATCAAAAGCTCCCTTAACCATCTCTCTA 167
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 88 TAACCAGAATCTTTTCCTCTTTCTCTAATCATATCAAAAGCTCCCTTAACCA--TCTCTA 145
Query 168 TAGCTGC--atatatatatataAGCAAAATCTGTTCTCTTCACTAGATTACAAAACCAGT 225
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 146 TAGCTGCTTATATATATATATAAGC-AAATCTGTTCTCTTCACTAGATTACAAAACCAGT 204
Query 226 CACCaaaaaaat----aaaaaC-TTGTA-TTTT-TGTT--TTCTGTGATCTCTCTAATGG 276
||||||||||| |||||| ||||| |||| | || |||||||||||||||||| |
Sbjct 205 AACCAAAAAAATAAAAAAAAACTTTGTATTTTTCTTTTACTTCTGTGATCTCTCTAAT-G 263
Query 277 AGCAACAGCAACAACAACAACTACCTTCTACTACTACTAGACCCAAGCCCAAGCTACTAA 336
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 264 -G----AGCAACAACAACAGCTACCTTCTACTACTACTAGACCCAAGCCCAAGCTACTAA 318
Query 337 ACCGGCTCAATACCTACGTCGGTTCGAGCCGGGTTGGCAAACGGTTCAAACTCGCCGAAC 396
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 ACCGGCTCAACACCTATGTCGGTTCGAGCCGGGTTGGCAAACGGTTCAAACTCGCCGAAC 378
Query 397 GTAATTCAACTTTCACGACGGAGCTCCGTGCTGGTACCGCCACTTTCTTAACCATGGCTT 456
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 379 GTAATTCTACTTTCACGACGGAGCTCCGTGCTGGTACGGCCACTTTCTTAACCATGGCTT 438
Query 457 ATATCCTCGCCGTCAACGCTTCAATCCTTTCTGATTCCGGTGGTACTTGCTCTGTTTCCG 516
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 439 ATATCCTCGCCGTCAACGCTTCAATCCTCTCTGATTCCGGTGGAACTTGCTCTGTTTCCG 498
Query 517 ATTGTATCCCTCTATGCTCAAACCCAGCGATCGAACCTTCGCAGTGTACCGGACCGGGTC 576
||||||||||||| |||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 499 ATTGTATCCCTCTCTGCTCAAACCCAACGATCCAACCTTCTCAGTGTACCGGACCGGGTC 558
Query 577 TCCGATTAATCCAACCCGACGTTTCCTGTAAATTCAACCCGGTTAATCCTGGTTACGCCG 636
||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 559 TCCGATTGATCCAACCTGACGTTTCCTGTAAATTCAACCCGGTTAATCCCGGTTACGCCA 618
Query 637 CATGCGTTGAAGAAATTCGAAAGGATCTAATCGTCGCCACCGTAGCTGCGTCACTAATCG 696
| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 CTTGCGTCGAAGGAATTCGAAAGGATCTAATCGTCGCCACCGTAGCTGCGTCACTAATCG 678
Query 697 GTTGTGTAATCATGGGATTGATGGCGAATCTTCCTCTAGCTTTAGCTCCGGGAATGGGAA 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 GTTGTGTAATCATGGGATTGATGGCGAATCTTCCTCTAGCTTTAGCTCCGGGAATGGGAA 738
Query 757 CTAACGCTTATTTCGCTTACACCGTCGTTGGATTTCACGGATCCGGTTCAATCTCATACC 816
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 739 CTAACGCTTATTTCGCTTACACAGTCGTCGGATTTCACGGATCCGGTTCAATCTCATACC 798
Query 817 GGACCGCACTCGCCGCCGTTTTCATCGAAGGACTGATATTTCTCTTCATCTCCGCCATAG 876
| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 799 GAACCGCACTCGCCGCTGTTTTCATCGAAGGACTGATCTTTCTCTTCATCTCCGCCATAG 858
Query 877 GTTTCAGAGCAAAACTTGCGAAACTCGTTCCTAAACCGGTCAGAATCAGTTCCTCCGCCG 936
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 GTTTCAGAGCAAAGCTCGCGAAACTCGTTCCTAAACCGGTCAGAATCAGTTCCTCCGCCG 918
Query 937 GAATCGGACTTTTCCTCGCTTTCATCGGTTTACAGAACAATCAAGGAATCGGTTTAGTCG 996
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 919 GAATCGGACTTTTCCTCGCCTTCATCGGTTTACAGAACAATCAAGGAATCGGTTTAGTCG 978
Query 997 GTTATAGTCCTTCAACACTAGTCACTCTCGCCGCTTGTCCAGCCTCATCACGAATATCGT 1056
||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| |
Sbjct 979 GTTATAGTCCTTCAACACTCGTCACCCTCGCCGCTTGTCCAACCTCATCACGAATATCAT 1038
Query 1057 TAGCTCCCGTTATAACGTCAGCTAACGGAACCGTTAGTTTACTCGCCGGAGGATCAGTTT 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 TAGCTCCCGTTATAACGTCAGCTAACGGAACCGTTAGTTTACTCGCCGGAGGATCAGTTT 1098
Query 1117 CCGGCGATATTATGTGTATTCACGGACGAATGGAGAGTCCAACGTTCTGG-TTAGGTATC 1175
||||||||||||||||| |||||||||||||||||||||||||||| ||| || ||||||
Sbjct 1099 CCGGCGATATTATGTGTCTTCACGGACGAATGGAGAGTCCAACGTTTTGGCTT-GGTATC 1157
Query 1176 GTCGGATTCGTGATCATAGCTTATTGTTTGGTAAAGAACGTGAAAGGAGCGATGATCTAC 1235
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1158 GTCGGATTCGTGATCATAGCTTATTGTTTGGTGAAGAACGTGAAAGGAGCGATGATCTAC 1217
Query 1236 GGGATCGTCTTCGTAACGGCCGTTTCGTGGTTCCGTAACACAGAGGTAACGGCGTTTCCG 1295
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 GGGATCGTCTTCGTAACGGCCGTTTCGTGGTTCCGTAACACAGAGGTAACGGCGTTTCCA 1277
Query 1296 AACACATCGGCCGGAGATGCAGCTCATGATTATTTCAAAAAGATCGTTGATGTACACGTC 1355
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1278 AACACATCGGCCGGTGACGCAGCTCATGATTATTTCAAAAAGATTGTTGATGTACACGTC 1337
Query 1356 ATTAAACATACCGCCGGAGCTTTAAGCTTCTCCGGGATAAACAAAGGACATTTCTGGGAA 1415
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 ATCAAACACACCGCCGGAGCTTTAAGCTTCTCCGGGATAAACAAAGGACATTTCTGGGAA 1397
Query 1416 GCTCTGGTGACATTCCTCTACGTTGATATTTTGGATACGACGGGAACGCTTTACTCCATG 1475
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1398 GCTCTGGTGACATTCCTCTACGTTGATATTTTGGATACGACGGGAACGCTTTATTCCATG 1457
Query 1476 GCTAGATTCGCCGGATTCGTCGACGAGAAAGGAGATTTCGCCGGACAGTATTTCGCGTTT 1535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 GCTAGATTCGCCGGATTCGTCGACGAGAAAGGAGATTTCGCCGGACAGTATTTCGCGTTT 1517
Query 1536 ATGTCTGACGCGTCTGCGATTGTGATCGGATCGTTGCTTGGTACATCTCCGGTGACTGTT 1595
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1518 ATGTCCGACGCGTCTGCGATTGTGATCGGATCGTTGCTTGGTACATCTCCAGTGACGGTT 1577
Query 1596 TTCATCGAGTCGTCGACGGGGATAAGAGAAGGAGGGAGGACGGG-TCTAACGGCGATTAC 1654
|||||||| ||||| ||||||||| | |||||||| |||||||| | | || ||||||||
Sbjct 1578 TTCATCGAATCGTCAACGGGGATACGTGAAGGAGGAAGGACGGGAT-TGACTGCGATTAC 1636
Query 1655 GGTGGCTGTTTATTTCTTGTTAGCGATGTTTTTCACACCGTTGCTAGCTTCGATTCCCGC 1714
|||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1637 GGTGGCGGTTTATTTCTTCTTAGCGATGTTTTTCACGCCGTTGCTAGCTTCGATTCCGGC 1696
Query 1715 ATGGGCGGTTGGTCCGCCGTTGATATTAGTCGGAGTGATGATGATGAAATCAGTCACAGA 1774
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 1697 TTGGGCGGTTGGTCCACCGTTGATATTAGTTGGAGTGATGATGATGAAATCAGTGACGGA 1756
Query 1775 GATTGATTGGGAAGATATGAGAGAGGCGATTCCGGCATTTGTGACAATGATTCTGATGCC 1834
||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1757 GATCAATTGGGAAGATATGAGAGAGGCGATTCCGGCATTCGTGACAATGATTCTAATGCC 1816
Query 1835 GTTGACTTACTCCGTCGCGTATGGATTGATCGGAGGGATTGGGAGCTATGTAGTGTTGCA 1894
|||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1817 GTTGACGTACTCCGTCGCGTATGGATTGATCGGAGGGATTGGGAGCTACGTGGTGTTGCA 1876
Query 1895 TCTATGGGATTGGGGAGAAGAAGGTTTGGTGAAATTAGGGTTTTTGAAAAGGAAAGTT-A 1953
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
Sbjct 1877 TCTATGGGATTGGGGAGAAGAAGGATTGGTGAAATTAGGGTTTTTGAAAAAGAAAGTTGA 1936
Query 1954 A-A-GAAGA-G-G-AT-A--ATAATAATGGAGTTGTCAAAGCTAGTGAGATTGATACTAC 2005
| | ||||| | | | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1937 AGAAGAAGAAGAGGAAGAGGATAATAATGGAGTTGTCAAAGCTAGTGAGATTGATACTAC 1996
Query 2006 CGtttaggt-tttt-ctttgatttgattttacatttttgttactattgattttttagatt 2063
||||||| | |||| |||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1997 CGTTTAGATATTTTTCTTTGATTTGATTTTAAATTTTTGTTACTATTGATTTTTTTGATT 2056
Query 2064 tctttCTTAGGATGAAAGGACAAGTGATTGCATTATTGATTTGTTGCTCTTGTAGATTTT 2123
|||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2057 TCTTTCCTAGGAAGAAAGGACAAGTGATTGCATTATTGATTTGTTGCTCCTGTAGATTTT 2116
Query 2124 TTGAAGA-G-AAAAGTGTAAAAATGTTGGGGA-AAAATAAAGAAAACTGTTGAAA 2175
||||| | | |||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 2117 TTGAA-ACGGAAAAGTGTAAAAATGTTGGGGAGAAAATAAAGAAAACTGTAGAAA 2170
> Ahg896713 jgi|Araly1|896713|Al_scaffold_0005_679
Length=807
Score = 861 bits (466), Expect = 0.0
Identities = 535/569 (94%), Gaps = 1/569 (0%)
Strand=Plus/Plus
Query 1382 CTTCTCCGGGATAAACAAAGGACATTTCTGGGAAGCTCTGGTGACATTCCTCTACGTTGA 1441
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 226 CTTCTCCGGGATAAACAAAGGATATTTCTGGGAAGCTCTGGTGACATTCCTCTACGTTGG 285
Query 1442 TATTTTGGATACGACGGGAACGCTTTACTCCATGGCTAGATTCGCCGGATTCGTCGACGA 1501
|| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 286 TA-TTTGGATACGACAGGAACGCTTTACTCAATGGCTAGATTCGCCGGATTCGTCGACGA 344
Query 1502 GAAAGGAGATTTCGCCGGACAGTATTTCGCGTTTATGTCTGACGCGTCTGCGATTGTGAT 1561
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 345 GAAAGGAGATTTCGCCGGACAGTATTTCGCGTTTATGTCTGACGCGTCTACGATTGTGAT 404
Query 1562 CGGATCGTTGCTTGGTACATCTCCGGTGACTGTTTTCATCGAGTCGTCGACGGGGATAAG 1621
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
Sbjct 405 CGGATCGTTGCTTGGTACATCTCCGGTGACGGTTTTCATCGAATCGTCGACGGGGATACG 464
Query 1622 AGAAGGAGGGAGGACGGGTCTAACGGCGATTACGGTGGCTGTTTATTTCTTGTTAGCGAT 1681
|||||||| |||||||| ||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 465 TGAAGGAGGAAGGACGGGGCTAACTGCGATTACGGTGGCGGTTTATTTCTTCTTAGCGAT 524
Query 1682 GTTTTTCACACCGTTGCTAGCTTCGATTCCCGCATGGGCGGTTGGTCCGCCGTTGATATT 1741
||||||||| || ||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 525 GTTTTTCACGCCATTGCTAGCTTCGATTCCAGCTTGGGCGGTTGGTCCACCGTTGATATT 584
Query 1742 AGTCGGAGTGATGATGATGAAATCAGTCACAGAGATTGATTGGGAAGATATGAGAGAGGC 1801
|||||||||||||||||||||||| || || ||||| | |||||||||||||| || |
Sbjct 585 AGTCGGAGTGATGATGATGAAATCGGTAACGGAGATCAACTGGGAAGATATGAGGGAAGT 644
Query 1802 GATTCCGGCATTTGTGACAATGATTCTGATGCCGTTGACTTACTCCGTCGCGTATGGATT 1861
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 645 GATTCCGGCATTCGTGACAATGATTCTAATGCCGTTGACTTACTCCGTCGCGTATGGATT 704
Query 1862 GATCGGAGGGATTGGGAGCTATGTAGTGTTGCATCTATGGGATTGGGGAGAAGAAGGTTT 1921
||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 705 GATCGGAGGGATTGGGAGCTACGTGGTGTTGCATCTATGGGATTGGGGAGAAGAAGGATT 764
Query 1922 GGTGAAATTAGGGTTTTTGAAAAGGAAAG 1950
|||||||||||||||||||||||||||||
Sbjct 765 GGTGAAATTAGGGTTTTTGAAAAGGAAAG 793
Score = 355 bits (192), Expect = 7e-97
Identities = 215/226 (95%), Gaps = 2/226 (1%)
Strand=Plus/Plus
Query 1128 ATGTGTATTCACGGACGAATGGAGAGTCCAACGTTCTGG-TTAGGTATCGTCGGATTCGT 1186
|||||| |||||||||||||||||||||||||||| ||| || |||||||||||||||||
Sbjct 1 ATGTGTCTTCACGGACGAATGGAGAGTCCAACGTTTTGGCTT-GGTATCGTCGGATTCGT 59
Query 1187 GATCATAGCTTATTGTTTGGTAAAGAACGTGAAAGGAGCGATGATCTACGGGATCGTCTT 1246
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 60 GATCATAGCTTATTTTTTGGTGAAGAACGTGAAAGGAGCGATGATCTACGGGATCGTCTT 119
Query 1247 CGTAACGGCCGTTTCGTGGTTCCGTAACACAGAGGTAACGGCGTTTCCGAACACATCGGC 1306
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 CGTAACGGCCGTTTCGTGGTTCCGTAACACAGAGGTAATGGCGTTTCCGAACACATCGGC 179
Query 1307 CGGAGATGCAGCTCATGATTATTTCAAAAAGATCGTTGATGTACAC 1352
||| || ||||||||||||||||| |||||||| ||||||||||||
Sbjct 180 CGGTGACGCAGCTCATGATTATTTTAAAAAGATTGTTGATGTACAC 225
> Ahg952636 jgi|Araly1|952636|scaffold_98600001.1
Length=358
Score = 560 bits (303), Expect = 1e-158
Identities = 338/355 (95%), Gaps = 2/355 (1%)
Strand=Plus/Plus
Query 1127 TATGTGTATTCACGGACGAATGGAGAGTCCAACGTTCTGG-TTAGGTATCGTCGGATTCG 1185
||||||| |||||||||||||||||||||||||||| ||| || |||||||||||||| |
Sbjct 5 TATGTGTCTTCACGGACGAATGGAGAGTCCAACGTTTTGGCTT-GGTATCGTCGGATTTG 63
Query 1186 TGATCATAGCTTATTGTTTGGTAAAGAACGTGAAAGGAGCGATGATCTACGGGATCGTCT 1245
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 64 TGATCATAGCTTATTGTTTGGTGAAGAACGTGAAAGGAGCGATGATCTACGGGATCGTCT 123
Query 1246 TCGTAACGGCCGTTTCGTGGTTCCGTAACACAGAGGTAACGGCGTTTCCGAACACATCGG 1305
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 124 TCGTAACGGCCGTTTCGTGGTTCCGTAACACGGAGGTAACGGCGTTTCCGAACACATCGG 183
Query 1306 CCGGAGATGCAGCTCATGATTATTTCAAAAAGATCGTTGATGTACACGTCATTAAACATA 1365
|| | || ||||||||||||||||| |||||||| ||||||||||||||||| ||||| |
Sbjct 184 CCCGTGACGCAGCTCATGATTATTTTAAAAAGATTGTTGATGTACACGTCATCAAACACA 243
Query 1366 CCGCCGGAGCTTTAAGCTTCTCCGGGATAAACAAAGGACATTTCTGGGAAGCTCTGGTGA 1425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 CCGCCGGAGCTTTAAGCTTCTCCGGGATAAACAAAGGACATTTCTGGGAAGCTCTGGTGA 303
Query 1426 CATTCCTCTACGTTGATATTTTGGATACGACGGGAACGCTTTACTCCATGGCTAG 1480
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 304 CATTCCTCTACGTTGATATTTTGGATACGACATGAACGCTTTACTCAATGGCTAG 358
> Ahg949166 jgi|Araly1|949166|scaffold_801053.1
Length=358
Score = 560 bits (303), Expect = 1e-158
Identities = 338/355 (95%), Gaps = 2/355 (1%)
Strand=Plus/Plus
Query 1127 TATGTGTATTCACGGACGAATGGAGAGTCCAACGTTCTGG-TTAGGTATCGTCGGATTCG 1185
||||||| |||||||||||||||||||||||||||| ||| || |||||||||||||| |
Sbjct 5 TATGTGTCTTCACGGACGAATGGAGAGTCCAACGTTTTGGCTT-GGTATCGTCGGATTTG 63
Query 1186 TGATCATAGCTTATTGTTTGGTAAAGAACGTGAAAGGAGCGATGATCTACGGGATCGTCT 1245
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 64 TGATCATAGCTTATTGTTTGGTGAAGAACGTGAAAGGAGCGATGATCTACGGGATCGTCT 123
Query 1246 TCGTAACGGCCGTTTCGTGGTTCCGTAACACAGAGGTAACGGCGTTTCCGAACACATCGG 1305
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 124 TCGTAACGGCCGTTTCGTGGTTCCGTAACACGGAGGTAACGGCGTTTCCGAACACATCGG 183
Query 1306 CCGGAGATGCAGCTCATGATTATTTCAAAAAGATCGTTGATGTACACGTCATTAAACATA 1365
|| | || ||||||||||||||||| |||||||| ||||||||||||||||| ||||| |
Sbjct 184 CCCGTGACGCAGCTCATGATTATTTTAAAAAGATTGTTGATGTACACGTCATCAAACACA 243
Query 1366 CCGCCGGAGCTTTAAGCTTCTCCGGGATAAACAAAGGACATTTCTGGGAAGCTCTGGTGA 1425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 CCGCCGGAGCTTTAAGCTTCTCCGGGATAAACAAAGGACATTTCTGGGAAGCTCTGGTGA 303
Query 1426 CATTCCTCTACGTTGATATTTTGGATACGACGGGAACGCTTTACTCCATGGCTAG 1480
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 304 CATTCCTCTACGTTGATATTTTGGATACGACATGAACGCTTTACTCAATGGCTAG 358
> Ahg949407 jgi|Araly1|949407|scaffold_801294.1
Length=370
Score = 431 bits (233), Expect = 1e-119
Identities = 279/302 (92%), Gaps = 0/302 (0%)
Strand=Plus/Plus
Query 1662 GTTTATTTCTTGTTAGCGATGTTTTTCACACCGTTGCTAGCTTCGATTCCCGCATGGGCG 1721
||||||||||| ||||||||||||||||| || ||||||||||||||||| || ||||||
Sbjct 3 GTTTATTTCTTCTTAGCGATGTTTTTCACGCCATTGCTAGCTTCGATTCCAGCTTGGGCG 62
Query 1722 GTTGGTCCGCCGTTGATATTAGTCGGAGTGATGATGATGAAATCAGTCACAGAGATTGAT 1781
|||||||||| ||||||||||||||||||||||||||| ||||| || || ||||| ||
Sbjct 63 GTTGGTCCGCTGTTGATATTAGTCGGAGTGATGATGATAAAATCGGTAACGGAGATCAAT 122
Query 1782 TGGGAAGATATGAGAGAGGCGATTCCGGCATTTGTGACAATGATTCTGATGCCGTTGACT 1841
|||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 123 TGGGAAGATATGAGGGAAGCGATTCCGGCATTCGTGACAATGATTCTAATGCCGTTGACT 182
Query 1842 TACTCCGTCGCGTATGGATTGATCGGAGGGATTGGGAGCTATGTAGTGTTGCATCTATGG 1901
||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||
Sbjct 183 TACTCCGTCGCGTATGGATTGATCGGAGGGATTGGAAGCTACGTGGTGTTGCATCTGTGG 242
Query 1902 GATTGGGGAGAAGAAGGTTTGGTGAAATTAGGGTTTTTGAAAAGGAAAGTTAAAGAAGAG 1961
|||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 243 GATTGGGGAGAAAAAGGATTGGTGAAATTAGGGTTTTTGAAAAGGAAAGTTGAAGAAGAG 302
Query 1962 GA 1963
||
Sbjct 303 GA 304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82236838955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5