BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10970.1
Length=1478
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903984 jgi|Araly1|903984|Al_scaffold_0003_1112 1862 0.0
> Ahg903984 jgi|Araly1|903984|Al_scaffold_0003_1112
Length=1098
Score = 1862 bits (1008), Expect = 0.0
Identities = 1069/1099 (97%), Gaps = 2/1099 (0%)
Strand=Plus/Plus
Query 203 ATGGACTGCTCATGCAGTACTCGTCCTTCGTCTCTGCTTATCTCTTCCGAACCATCTTTT 262
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1 ATGGACTGCTCATGCAGTACTCGTCCTTCGTCTCTGCTCATCTCTTCCGAGCCATCTTTT 60
Query 263 CGCTTTCCTCACTCTAATTTCTCCTCGAATCTCAGCTTTCAGATACCGAAAGATACGAAG 322
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 CGCTTTCCTCACTCTAATTTCTCCAAAAATCTCAGCTTTCAGATACCGAAAGATACGAAG 120
Query 323 TTGGTGAAGCAGCGTTTGGTAGTGAGAAGTTCCTCTGGTTCTGATTATCAAAACGGCGAC 382
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 121 TTGGTGAAGCAGCGTTTGGTAGTGAGAAGTTCTTCTGGGTCTGATTATCAAAACGGCGAC 180
Query 383 GTTAATGGGTTTCCTCTCAAACCAAACAAACTCTTTATGCAAGAGGCGATTGGAGCTGAG 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTAATGGGTTTCCTCTCAAACCAAACAAACTCTTTATGCAAGAGGCGATTGGAGCTGAG 240
Query 443 TATGGAGAAGGGTTTGAGACTTTTAGACAGGATGGTCCTCTTAAAGTGGATGTGGATTTC 502
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 TATGGAGAAGGGTTTGAGACTTTTAGACAGGATGGCCCTCTTAAAGTGGATGTGGATTTC 300
Query 503 TGGAATGAGAAACTACAAGATGGTTTTCTTCAAAGAATACGTTACGCAATGAAACCAGAT 562
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGGAATGAGAAACTGCAAGATGGTTTTCTTCAAAGAATACGTTACGCAATGAAACCAGAT 360
Query 563 GAAGCCTATGGACTTATTTTCTCTTGGGACAATGTCGTGGCTGATACTCGAAGTCTTAAG 622
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 GAAGCGTATGGACTTATTTTCTCTTGGGACAATGTCGTGGCTGATACTCGAAGACTTAAG 420
Query 623 TTGGAAGCTTGGAAGCAGCTCGCTGCAGAAGAAGGAAAAGAAATTACGGAGGAGGTTGAC 682
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 421 TTGGAAGCTTGGAAGCAGCTCGCTTCAGAAGAAGGAAAAGAAATTACGGAGGAGGTTGAC 480
Query 683 ATCCAAAGACTGATGCTTTATGCCGGCGCTGACCATGTGCTTCGTAAGGTGTTGTTTTGG 742
|| ||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||
Sbjct 481 ATTCAAAGACTGATGCTTTATGCCGGCGCTGACCATGTTCTTAGTAAGGTGTTGTATTGG 540
Query 743 GAGAAAACGCAAAGCAAAATTGATAGATTGAAACTCAGGCTATCGGAAATATATTATGAT 802
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 541 GAGAAAACGCAAAGCAAAATCGACAGATTGAAACTCAGGCTATCGGAAATATATTACGAT 600
Query 803 AGTCTTCTCAAACTCACAGAACCAAAAGAAGGACTTAGAGATTGGCTTGACGCTGTTACA 862
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 AGTCTTCTCAAACTCATAGAACCAAAAGAAGGACTTAGAGATTGGCTCGACGCTGTTACA 660
Query 863 ACTGCTCGCATTCCCTGTGCTGTTGTCTCAAATCTTGATCGGAAAAACATGATCAATGCT 922
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 ACTGCTCGCATTCCCTGTGCTGTTGTCTCAAATCTTGATCGAAAAAACATGATCAATGCT 720
Query 923 CTTGAACGGATGGGACTTCAAAAGTATTTCCAGGCAG-TGGTTTCCGAGGAAGATGGTAT 981
||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 721 CTTGACCGGATGGGACTTCAAAAGTATTTCCAGGC-GATGGTTTCCGAGGAAGATGGTAT 779
Query 982 GGAATCGATAGCTCACAGATTTCTTTCTGCGGCTGTGAAGTTGGATAGAAAACCGTCGAA 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GGAATCGATAGCTCACAGATTTCTTTCTGCGGCTGTGAAGTTGGATAGAAAACCGTCGAA 839
Query 1042 ATGTGTTGTGTTTGAGGATGATCCTAGGGGTATAACCGCGGCTCACAACTGTACAATGAT 1101
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 840 ATGTGTTGTGTTTGAGGATGATCCTAGGGGTATAACTGCGGCTCACAACTGTACAATGAT 899
Query 1102 GGCAGTTGGATTAATCGGTGCTCATCGGGCGTATGATCTGGTTCAGGCTGATCTTGCAGT 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GGCAGTTGGATTAATCGGTGCTCATCGGGCGTATGATCTGGTTCAGGCTGATCTTGCAGT 959
Query 1162 TGGAAACTTTTACGAGCTATCTGTGATAAACCTCAGGAGATTATTTGCCAACAAAGGCTC 1221
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 960 TGGAAACTTTTACGAGCTATCTGTGATAAACCTCAGAAGATTATTTGCAAACAAAGGCTC 1019
Query 1222 TACATTTATGGATCACGAGAAACAGATCATAGAAAAATCGCCGCCCAAAAGAAAGCTTAC 1281
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1020 TACATTTATGGATCACGAGAAACAGATCATAGAAAAATCGCCGCCGAAAAGAAAGCTAAC 1079
Query 1282 CATTGATACCATATTCTAA 1300
|||||||||||||||||||
Sbjct 1080 CATTGATACCATATTCTAA 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55307035740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5