BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G10980.1
Length=2532
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478442 jgi|Araly1|478442|fgenesh2_kg.3__1143__AT3G10980.1 3005 0.0
> Ahg478442 jgi|Araly1|478442|fgenesh2_kg.3__1143__AT3G10980.1
Length=2050
Score = 3005 bits (1627), Expect = 0.0
Identities = 1863/1973 (94%), Gaps = 32/1973 (2%)
Strand=Plus/Plus
Query 267 AATTTT-TAAATTCCGATTCAACGAG-TTTCTCAACTAAGGGTTTGATTCCTTTTCTTTT 324
|||||| ||||| |||||||||||| |||| | |||||||||||||||||||| | |
Sbjct 95 AATTTTAAAAATT-CGATTCAACGAGTTTTC-CTGTTAAGGGTTTGATTCCTTTTC-TGT 151
Query 325 TCATCTTTGTTTATTCAAATCTGAATAC---TTT-GTTAGGTTTCAATGTGCTGAGAAGT 380
||||||||||||| ||||||||||| || ||| ||| |||| ||||||||| |
Sbjct 152 TCATCTTTGTTTAGTCAAATCTGAAGACTTGTTTGGTTTGGTTCCAATGTGCT-----G- 205
Query 381 AGAAGAAGCTTCGTTGGC--AAGTCCGAAtcttttcttc-ttcttttttctggg-tttta 436
|||||||||||||||||| |||| |||||||||||||| || ||||||||||| |||||
Sbjct 206 AGAAGAAGCTTCGTTGGCAAAAGT-CGAATCTTTTCTTCTTTTTTTTTTCTGGGTTTTTA 264
Query 437 tattctttGCCAACAATGTTTAAGCTTGCAAAGCATATATTCCTTTGAGTAGCTG-T--T 493
||||||||||||||||||||||||||||| |||||||||| |||||||||||||| | |
Sbjct 265 TATTCTTTGCCAACAATGTTTAAGCTTGCTAAGCATATATGCCTTTGAGTAGCTGCTGCT 324
Query 494 TTATTCCTACAAAGATTTGATCTTCAATAGAGAGAGATAATGGGATCTAATTGTGATGGG 553
|||||||||| ||||||||||||| || ||||||| ||||||||| ||||||||||||
Sbjct 325 TTATTCCTAC-AAGATTTGATCTT---TA-AGAGAGAGAATGGGATCGAATTGTGATGGG 379
Query 554 AATTTGAAAGCAGAGATTGAAGAATCTAATGGTTCTTCTGGCAAAAATACTAAGGTTCCT 613
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 380 AATTTGAAAGCAGAGATTGAAGAATCTAATGGTTCTTCTGGCAAAAAAACTAGGGTTCCT 439
Query 614 CCTTGTCCTCTTGATGTTTCTACATCTAGAAGAACTTTGATTGGTGATGGTAAACCTAGG 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 CCTTGTCCTCTTGATGTTTCTACATCTAGAAGAACTTTGATTGGTGATGGTAAACCTAGG 499
Query 674 AGATGGTCTATTAGTGCTTTACCTGATGCTTCTAGTAGATTCCAGCTTCTCAAATTTGGT 733
|||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||
Sbjct 500 AGATGGTCTATTAGTGCTTTGCCTGATGCTTCTAGTAGAATCCAGCTTCTGAAATTTGGT 559
Query 734 TCTCCTTCTGCTAAGTTCAAGAAAATGGCTGAGGATAGAGACGAGGTTTCACGGTCAGTG 793
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 560 TCTCCTTCTGCTAAATTCAAGAAAATGGCTGAGGATAGAGACGAGGTTTCGCGGTCAGTG 619
Query 794 ACTAGCTCAAGTAACGGAAGCAGTCATAATTTCAGGGAAAGAATCAGTGGCGTGCTTCAC 853
| |||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 620 AAGAGCTCAAGTAGCGGCAGCAGTCATAATTTCAGGGAAAGAATCAGTGGTGTGCTTCAC 679
Query 854 CGGAAAATAGATTGGAGTTCTCTGATGAATATGGGGAAAGAATGGATTAGGAATCCTATT 913
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 680 CGGAATATCGATTGGAGTTCTCTGATGAAAATGGGGAAAGAATGGATTAGGAATCCTATT 739
Query 914 AACATGGCTTTATTCGTTTGGATACTTGTTGTTGCAGTCTCTGGTGCTATTCTCTTCATG 973
||||||||| | || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 AACATGGCTCTCTTTGTGTGGATACTTGTTGTTGCAGTCTCTGGTGCTATTCTCTTCATG 799
Query 974 GTTATGACTGGTATGTTGAATCATGCTTTGCCTAAGAAGTCACAGAGAGATGCTTGGTTT 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 GTTATGACTGGTATGTTGAATCATGCTTTGCCTAAGAAGTCACAGAGAGATGCTTGGTTT 859
Query 1034 GAAGTTAACAATCAGATTCTTAATGGCTTGTTTACTTTGATGTGTCTTTATCAACATCCC 1093
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 860 GAAGTTAACAATCAGATCCTTAATGGGTTGTTTACTTTGATGTGTCTTTATCAACATCCG 919
Query 1094 AAACGGTTTTATCACTTAGTGCTTCTTTGTAGATGGAAGCATGATGATATTACTAAGCTT 1153
||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 920 AAACGGTTTTATCACTTGGTGCTTCTTTGTAGATGGAAGCAGGATGATATTACAAAGCTT 979
Query 1154 AGGAAAGCTTATTGCAAGGATGGGACTTATAAGCCTAATGAATGGATGCACATTATGGTT 1213
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 980 AGGAAAGCTTATTGCAAGGACGGGACTTATAAGCCGAATGAATGGATGCACATTATGGTT 1039
Query 1214 GTTGTCATTTTGCTTCACTTGAATTGTTTTGCTCAGTACGCGCTTTGTGGTCTTAATGTT 1273
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1040 GTTGTCTTTTTGCTTCACTTGAACTGTTTTGCTCAGTACGCGCTTTGTGGTCTTAATGTT 1099
Query 1274 GGATACAGGAGATCAGAGAGACCTCCCATTGGAGTTGCTATATGTATCTCTGCTGCCATT 1333
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 1100 GGATACAGGAGATCAGAGAGACCTCCCATCGGAGTCGCTATATGTATCTCTGCTGCGATT 1159
Query 1334 GGAGCTCCTGCGGTTGCGGGTTTGTACACTATACTAAGTCCACTTGGGAAAGATTATAAT 1393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1160 GGAGCTCCTGCGGTTGCGGGTTTGTACACTATACTAAGTCCACTTGGGAAAGATTATGAT 1219
Query 1394 GATTCTAATGAAGACGAGGAGAATCAACTGAAGCAACGTGAAGAAGGGTCTGTTAATCGT 1453
||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1220 GATTCAAATGAAGACGAGGAGAATCAACTGCAGCAACGTGAAGAAGGGTCTGTGAATCGC 1279
Query 1454 CGGTTTACTTTAGAGAGGAGGTATTCGTTTGCCTCTGCTTCCACGGGGGTTGGGGATGGG 1513
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1280 CGGTTTACTTTAGAGAGGAGGTATTCGTTTGCTTCTGCTTCCACGGGGGTTGGGGATGGA 1339
Query 1514 ATGGTTCCGGTGAGTGATCCTCAGTGGAGTGGTGGAATTTTGGATATTTGGGATGATATT 1573
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1340 ATGGTTCCGGTGAGTGATCCTCAATGGAGTGGTGGAATTTTGGATATTTGGGATGATATT 1399
Query 1574 TCATTGGCTTATCTTTCTCTTTTCTGCACTTTCTGTGTCTTTGGATGGAACATGGAGAGA 1633
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1400 TCATTGGCTTATCTTTCTCTTTTCTGCACGTTCTGTGTCTTTGGATGGAATATGGAGAGA 1459
Query 1634 GTTGGGTTTGGGAACATGTATGTTCACATAGCTACGTTTATTCTCTTCTGTTTGGCACCT 1693
|||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1460 GTTGGGTTCGGGAATATGTATGTTCACATAGCGACGTTTATTCTCTTTTGTTTGGCACCT 1519
Query 1694 TTCTTTATATTCAACTTAGCTGCGGTTAATATCGATAATGAGACGGTCAGGGAGGCG-TT 1752
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1520 TTCTTTATATTCAACTTAGCTGCGGTTAATATCGATAATGAGACGGTTAGGGAGGCCCTT 1579
Query 1753 AGGGATATCTGGAATCCTTCTTTGTGTGTTTGGTTTGCTCTATGGTGGATTCTGGAGAAT 1812
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1580 -GGGATATCTGGAATCCTTCTTTGTTTGTTTGGTTTGCTCTATGGTGGATTCTGGAGAAT 1638
Query 1813 TCAGATGAGGAAAAGATTCAAATTACCGAGTTATAATTTCTGTTTCGGTAGAGCCGCGAT 1872
|||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 1639 TCAGATGAGGAAAAGATTCAAATTGCCGAGTTATAAGTTCTGCTTCGGTAGAGCCGCGAT 1698
Query 1873 TGCTGATTGTGCGCTCTGGTTATGTTGTTGTTGGTGCTCTTTAGCACAAGAAGTTAGGAC 1932
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1699 TGCTGATTGTGCGCTCTGGTTATGTTGTTGCTGGTGCTCTTTAGCACAAGAAGTTAGGAC 1758
Query 1933 TGCAAACTCTTATGAGATAGTGGAAGACAAATTCTGCCAAAGAAAAGAAGAGAAGAATAT 1992
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1759 TGCAAACGCTTATGAGATAGTGGAAGACAAATTCTGCCAAAGAAAAGAAGAGAAGAATTT 1818
Query 1993 GGTATCTCCGAATTTGGTATCACCTTTGCCTCGTGAAGACGGTGTGTTTGATCCTCGGTT 2052
|| |||||||||||||||||| ||| |||||||||| |||||||| ||||||||||||||
Sbjct 1819 GGCATCTCCGAATTTGGTATCTCCTATGCCTCGTGAGGACGGTGTCTTTGATCCTCGGTT 1878
Query 2053 TGGTCTCGGGAGCTCCCCTAAGAACATAAGTGGAGCTAGTTCTCCTAGCCCGAGCAGGTT 2112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1879 TGGTCTCGGGAGCTCCCCTAAGAACATAAGTGGAGCTAGTTCTCCTAGCCCGAGCAGGTT 1938
Query 2113 TTGGAAAGAGGCACATAGCCCAAATGTACAGACACCTAGAGAGAAAGAAGA-GGTTAAAA 2171
||||||||||| |||||| |||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 1939 TTGGAAAGAGGTACATAGTCCAAATATACAGACACCTAGAGAGAAAGAAGAAGGT-AAAA 1997
Query 2172 GCGATGTTGCTCTGACTCCACCTTCTCCTCTGTCTATACACCGAGAAGCTTGA 2224
|||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1998 GCGAGGTTGCTCTGACTCCACCTTCTCCTCTGTCTATACACCGAGAAGCTTGA 2050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95454153970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5