BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G10985.1

Length=918
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg928811 jgi|Araly1|928811|scaffold_301268.1                        776    0.0  


> Ahg928811 jgi|Araly1|928811|scaffold_301268.1
Length=467

 Score =  776 bits (420),  Expect = 0.0
 Identities = 454/470 (97%), Gaps = 3/470 (1%)
 Strand=Plus/Plus

Query  132  GACGTGGTTCTGAAACTGTATGAAGCCCTGAGATCTCGCGACGTCAAATCTGTGCACCAG  191
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1    GACGTGGTTCTGAAACTGTATGAAGCCCTGAGATCTCGCGACGTTAAATCTGTGCACCAG  60

Query  192  ATCTTAACCCCAGATCTGGAGTATTGGTTCCACGGTCCTCCGCCGCACCAGTTTTTGATG  251
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  61   ATCTTAACCCCAGATCTGGAGTATTGGTTCCACGGCCCTCCGCCGCACCAGTTTTTGATG  120

Query  252  CGCGTACTCACCGGAGGTGTCTCTCCGTCTTCTTCCTCCTTCGAATTCGTACCTCTCTCC  311
            |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct  121  CGCGTACTCACCGGAGGTGTCTCTCCGTCTTCCTCCTCGTTCGAATTCGTACCTCTCTCC  180

Query  312  GTCGTTTCCTTCGGATCTACCGTAATCGCGGAAGGCTGCGACGCCGCGACATCGATTTCT  371
            |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct  181  GTCGTTTCGTTCGGATCTACCGTAATCGCAGAAGGCTGCGACGCCGCGACCTCGATTTCT  240

Query  372  TGGATCCACGCTTGGACTGTAGCGAATGGGATAATCACACAGGTGAGGGAGTACTCTAAC  431
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  TGGATCCACGCTTGGACCGTAGCGAATGGGATAATCACACAGGTGAGGGAGTACTCTAAC  300

Query  432  ACTTCTCTCACCGTCACACGGATCGGTAACGTTGTTGCTGGACGACGCTCCGCTGAGATT  491
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  301  ACTTCTCTCACCGTCACACGGATCGGTAACGTTGTTGCTGGACGACGCTCTGCTGAGATT  360

Query  492  GCGCCTCCGTCGCATTGTTCCTCCGTGTGGGAAAGCCAATTCTCGGGTCGGGCTGGTAAA  551
            |||||   |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  361  GCGCC---GTCGCATTGTCCCTCCGTGTGGGAAAGCCAATTCTCGGGTCGGGCTGGTAAA  417

Query  552  CCCGTACCCGGTTTGGTTCTGGCGATTTGAAAGAGTTTGGTAAAGTAAGT  601
             ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct  418  TCCGTACCCGGTTTGGTTCTGGCGATTTGAAACAATTTGGTAAAGTAAGT  467



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34043764881


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5